Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0000608

Physical Location & Seq

Genomic Coordinates Forward (+)

140845 .. 142024

Gene Structure 1180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g00110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGATGTGGCTGGAAAACTCAATGCACTTGAGGTACCAATTTATGATACTTTTCTGGTACATGTCATTATGAATTCTTTGCCTGAGAATTATACACAACTCAAAGTCTATTATAATGGTATGCGTGAGAAATGGGATTTGAATGAAGTGATATCTATTTGTGTGAGTGAAGAAGAAAGAATGAAGAAAGAAAAGTTTGAGAAGGAGAGATATGATTCTGTGAACTTTGTCCAAAGTGCCACTAGGGCTACTAAACCTCATGTCCCTGATGCTGCTAGAAAGGATTCTTATTTCTTTGCATTTACTTTGTTAGTTTCTATTTATTTTGGTAATTTATGTTATTTTCATATTATTGTAGGTCCAATTGGTAAAGATGACAATAAATGGCCAAATGGAGCAATTTGGAGCAGTTTTGGACTTGAATTGGATAGCATGCGTGTGGAGCAGTGGGACTGGACGTTTTTGGTGTTTAACATGTCTTATCCAACCTTATCCAAACTTATCTTATCTTATCCAAACATTATTCCACTTTATCCAACATTATCTCATATTATCTCCAGCTGCAAAAGGAGTCCTTATCCTATTCTAGATACTTCCCATCTGATTTTAGGAGTCATAATCCATTCAAACACCCTAATCCATTTTCTCCTTGGTTTCTACCGAACCCTACCCTATATATTTTTTTTGGGGGGGGGGGGGGGGGAGGGGGGGAACTTGGTGTCGTATGTTCTATTCCAAATTGGTTCTACAACCTACAAGAGCCAAAGGAGAAGGATTGTGCTGCATCTTGTCATTCAATCATTGGAGATTTTAGAGTTCTTTCTGTCCTTGCTTAGTTTTCATGTTTATTTTAGTTTGCTTTTCATTTATGATGAACATGTTTTATATGAATTGATTATATCCAGTTATTGTTTTGTAAAACATGAATGTGATTTACTTATCTGCTTTATAGATAACTTATTCTTGTATAATATAAGGGAATTTCACCTAGATGTTATGAACTTATATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

338

Amino Acids

39.29

Weight (kDa)

5.94

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000608)

Species	Orthologous Gene IDs
malus_domestica	MD01G1168300.v1.1 MD07G1127200.v1.1
prunus_persica	Prupe.5G065800_v2.0.a1
pyrus_communis	pycom01g00450 pycom01g00530 pycom01g00860 pycom01g01270 pycom01g01320 pycom01g01350 pycom01g01370 pycom01g01420 pycom01g01440 pycom01g01750 pycom01g02240 pycom01g02250 pycom01g02980 pycom01g03610 pycom01g04360 pycom03g18640 pycom05g08190 pycom05g08210 pycom05g08250 pycom05g08270 pycom05g22500 pycom11g13900 pycom12424g00150 pycom12426g00120 pycom12426g00140 pycom12426g00190 pycom12426g00200 pycom12426g00480 pycom1256g00170 pycom1256g00250 pycom12659g00080 pycom12659g00170 pycom12659g00200 pycom12661g00070 pycom12661g00120 pycom12g04960 pycom1341g00040 pycom13g23150 pycom13g23290 pycom13g24030 pycom13g24710 pycom13g25450 pycom13g25530 pycom13g25630 pycom13g25650 pycom13g25850 pycom13g25920 pycom13g26130 pycom13g26150 pycom13g26180 pycom13g26190 pycom13g26310 pycom13g27290 pycom13g28010 pycom13g28180 pycom1654g00090 pycom1654g00100 pycom17g16670 pycom17g16980 pycom17g17190 pycom17g17210 pycom17g17290 pycom17g17520 pycom17g17750 pycom17g17770 pycom17g17820 pycom17g18030 pycom17g18060 pycom17g18070 pycom17g18240 pycom280g00030 pycom436g00360 pycom520g00110 pycom520g01100 pycom808g00240 pycom808g00490 pycom808g00610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 1012
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	386
AcsI	RAATTY	2 cut(s)	73, 980
AfaI	GTAC	2 cut(s)	36, 60
AflIII	ACRYGT	3 cut(s)	61, 474, 877
AgsI	TTSAA	4 cut(s)	142, 422, 627, 797
AluBI	AGCT	1 cut(s)	561
AluI	AGCT	1 cut(s)	561
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	3 cut(s)	272, 561, 781
ApoI	RAATTY	2 cut(s)	73, 980
Asp700I	GAANNNNTTC	1 cut(s)	283
Asp718I	GGTACC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	977
AvaII	GGWCC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	259, 548, 768
BccI	CCATC	1 cut(s)	606
BfaI	CTAG	4 cut(s)	243, 276, 587, 989
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	273, 562, 782
BlsI	GCNGC	3 cut(s)	274, 563, 783
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	2 cut(s)	259, 793
BpmI	CTGGAG	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	649
Bse1I	ACTGG	2 cut(s)	458, 903
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	458, 903
BseXI	GCAGC	3 cut(s)	259, 548, 768
BshFI	GGCC	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	248, 464
BsmFI	GGGAC	2 cut(s)	248, 464
BsnI	GGCC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	458, 903
BssECI	CCNNGG	1 cut(s)	649
BssT1I	CCWWGG	1 cut(s)	649
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	84, 833
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 442
BstNSI	RCATGY	4 cut(s)	65, 436, 478, 881
BstV1I	GCAGC	3 cut(s)	259, 548, 768
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	35, 59
CviAII	CATG	7 cut(s)	62, 260, 433, 475, 842, 878, 923
CviJI	RGCY	5 cut(s)	11, 248, 388, 561, 762
CviKI_1	RGCY	5 cut(s)	11, 248, 388, 561, 762
CviQI	GTAC	2 cut(s)	35, 59
DdeI	CTNAG	2 cut(s)	84, 833
EaeI	YGGCCR	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	73
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	7 cut(s)	65, 263, 436, 478, 845, 881, 926
FalI	AAGNNNNNCTT	2 cut(s)	559, 591
FaqI	GGGAC	2 cut(s)	248, 464
FatI	CATG	7 cut(s)	61, 259, 432, 474, 841, 877, 922
Fnu4HI	GCNGC	3 cut(s)	273, 562, 782
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	273, 562, 782
FspBI	CTAG	4 cut(s)	243, 276, 587, 989
GluI	GCNGC	3 cut(s)	273, 562, 782
GsuI	CTGGAG	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	388
Hin1II	CATG	7 cut(s)	65, 263, 436, 478, 845, 881, 926
HinfI	GANTC	4 cut(s)	215, 284, 571, 612
HphI	GGTGA	1 cut(s)	977
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	603
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	196, 765
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	26, 299, 564, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 442
HpyF3I	CTNAG	2 cut(s)	84, 833
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	7 cut(s)	65, 263, 436, 478, 845, 881, 926
KpnI	GGTACC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	395, 405, 442
LpnPI	CCDG	6 cut(s)	41, 96, 279, 439, 571, 916
Lsp1109I	GCAGC	3 cut(s)	259, 548, 768
LweI	GCATC	2 cut(s)	259, 793
MaeI	CTAG	4 cut(s)	243, 276, 587, 989
MaeII	ACGT	1 cut(s)	458
MboII	GAAGA	3 cut(s)	182, 185, 196
MfeI	CAATTG	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	388
MluNI	TGGCCA	1 cut(s)	388
MlyI	GAGTC	2 cut(s)	580, 621
MmeI	TCCRAC	2 cut(s)	509, 560
MnlI	CCTC	3 cut(s)	25, 267, 697
Mox20I	TGGCCA	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	3 cut(s)	437, 927, 990
Msp20I	TGGCCA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	245, 442
NlaIII	CATG	7 cut(s)	65, 263, 436, 478, 845, 881, 926
NlaIV	GGNNCC	1 cut(s)	36
NspI	RCATGY	4 cut(s)	65, 436, 478, 881
PaeI	GCATGC	1 cut(s)	436
PciI	ACATGT	3 cut(s)	61, 474, 877
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	215, 284
PkrI	GCNGC	3 cut(s)	274, 563, 783
PleI	GAGTC	2 cut(s)	579, 620
PpsI	GAGTC	2 cut(s)	579, 620
PscI	ACATGT	3 cut(s)	61, 474, 877
PsiI	TTATAA	2 cut(s)	114, 1012
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	561
RsaI	GTAC	2 cut(s)	36, 60
RsaNI	GTAC	2 cut(s)	35, 59
RseI	CAYNNNNRTG	3 cut(s)	437, 927, 990
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	273, 562, 782
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	580, 621
SetI	ASST	8 cut(s)	36, 259, 361, 461, 491, 563, 755, 990
SfaNI	GCATC	2 cut(s)	259, 793
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	3 cut(s)	437, 927, 990
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SphI	GCATGC	1 cut(s)	436
SspMI	CTAG	4 cut(s)	243, 276, 587, 989
StyI	CCWWGG	1 cut(s)	649
TaiI	ACGT	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	215, 284
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	452
TseI	GCWGC	3 cut(s)	272, 561, 781
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	73, 980
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	4 cut(s)	65, 436, 478, 881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	4 cut(s)	243, 276, 587, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.