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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 249, 505 |
| AcuI | CTGAAG | 1 cut(s) | 802 |
| AflIII | ACRYGT | 1 cut(s) | 44 |
| AgsI | TTSAA | 3 cut(s) | 115, 511, 559 |
| AjnI | CCWGG | 1 cut(s) | 943 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 129, 161 |
| AluBI | AGCT | 4 cut(s) | 13, 17, 378, 477 |
| AluI | AGCT | 4 cut(s) | 13, 17, 378, 477 |
| Alw21I | GWGCWC | 1 cut(s) | 52 |
| Alw26I | GTCTC | 1 cut(s) | 174 |
| Alw44I | GTGCAC | 1 cut(s) | 48 |
| AoxI | GGCC | 1 cut(s) | 761 |
| ApaLI | GTGCAC | 1 cut(s) | 48 |
| ApeKI | GCWGC | 1 cut(s) | 909 |
| ApoI | RAATTY | 2 cut(s) | 249, 505 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 497, 529 |
| AseI | ATTAAT | 1 cut(s) | 87 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 277, 933 |
| AsuNHI | GCTAGC | 1 cut(s) | 13 |
| BaeGI | GKGCMC | 1 cut(s) | 52 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 52 |
| BbvI | GCAGC | 1 cut(s) | 896 |
| BccI | CCATC | 1 cut(s) | 492 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 39, 73 |
| BciT130I | CCWGG | 1 cut(s) | 945 |
| BciVI | GTATCC | 1 cut(s) | 697 |
| BcoDI | GTCTC | 1 cut(s) | 174 |
| BfaI | CTAG | 7 cut(s) | 14, 18, 284, 525, 677, 731, 780 |
| BfuI | GTATCC | 1 cut(s) | 697 |
| BisI | GCNGC | 1 cut(s) | 910 |
| BlsI | GCNGC | 1 cut(s) | 911 |
| Bme1390I | CCNGG | 1 cut(s) | 945 |
| BmiI | GGNNCC | 1 cut(s) | 949 |
| BmrFI | CCNGG | 1 cut(s) | 945 |
| BmsI | GCATC | 1 cut(s) | 296 |
| BmtI | GCTAGC | 1 cut(s) | 17 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BpmI | CTGGAG | 2 cut(s) | 565, 966 |
| BpuEI | CTTGAG | 1 cut(s) | 134 |
| Bsa29I | ATCGAT | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 1 cut(s) | 793 |
| BseBI | CCWGG | 1 cut(s) | 945 |
| BseCI | ATCGAT | 1 cut(s) | 59 |
| BseDI | CCNNGG | 1 cut(s) | 793 |
| BseGI | GGATG | 2 cut(s) | 503, 717 |
| BseMII | CTCAG | 3 cut(s) | 107, 137, 904 |
| BseSI | GKGCMC | 1 cut(s) | 52 |
| BseXI | GCAGC | 1 cut(s) | 896 |
| BshFI | GGCC | 1 cut(s) | 763 |
| BshVI | ATCGAT | 1 cut(s) | 59 |
| BsiHKAI | GWGCWC | 1 cut(s) | 52 |
| BsmAI | GTCTC | 1 cut(s) | 174 |
| BsmI | GAATGC | 3 cut(s) | 82, 233, 331 |
| BsnI | GGCC | 1 cut(s) | 763 |
| Bsp1286I | GDGCHC | 1 cut(s) | 52 |
| BspANI | GGCC | 1 cut(s) | 763 |
| BspCNI | CTCAG | 3 cut(s) | 106, 136, 903 |
| BspDI | ATCGAT | 1 cut(s) | 59 |
| BspLI | GGNNCC | 1 cut(s) | 949 |
| BspOI | GCTAGC | 1 cut(s) | 17 |
| BssECI | CCNNGG | 1 cut(s) | 793 |
| BssT1I | CCWWGG | 1 cut(s) | 793 |
| Bst2UI | CCWGG | 1 cut(s) | 945 |
| Bst4CI | ACNGT | 1 cut(s) | 917 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 302, 479 |
| BstDEI | CTNAG | 4 cut(s) | 93, 104, 123, 890 |
| BstF5I | GGATG | 2 cut(s) | 503, 717 |
| BstMAI | GTCTC | 1 cut(s) | 174 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 421 |
| BstNI | CCWGG | 1 cut(s) | 945 |
| BstNSI | RCATGY | 3 cut(s) | 48, 304, 535 |
| BstSCI | CCNGG | 1 cut(s) | 943 |
| BstSLI | GKGCMC | 1 cut(s) | 52 |
| BstV1I | GCAGC | 1 cut(s) | 896 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| Bsu15I | ATCGAT | 1 cut(s) | 59 |
| BsuI | GTATCC | 1 cut(s) | 697 |
| BsuRI | GGCC | 1 cut(s) | 763 |
| BsuTUI | ATCGAT | 1 cut(s) | 59 |
| BtsCI | GGATG | 2 cut(s) | 503, 717 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 302, 479 |
| ClaI | ATCGAT | 1 cut(s) | 59 |
| CseI | GACGC | 1 cut(s) | 138 |
| CviAII | CATG | 9 cut(s) | 38, 45, 173, 301, 339, 532, 591, 700, 952 |
| DdeI | CTNAG | 4 cut(s) | 93, 104, 123, 890 |
| DraI | TTTAAA | 1 cut(s) | 409 |
| Eco130I | CCWWGG | 1 cut(s) | 793 |
| Eco147I | AGGCCT | 1 cut(s) | 763 |
| Eco57I | CTGAAG | 1 cut(s) | 802 |
| EcoRII | CCWGG | 1 cut(s) | 943 |
| EcoT14I | CCWWGG | 1 cut(s) | 793 |
| ErhI | CCWWGG | 1 cut(s) | 793 |
| FaeI | CATG | 9 cut(s) | 41, 48, 176, 304, 342, 535, 594, 703, 955 |
| FatI | CATG | 9 cut(s) | 37, 44, 172, 300, 338, 531, 590, 699, 951 |
| FauNDI | CATATG | 1 cut(s) | 483 |
| Fnu4HI | GCNGC | 1 cut(s) | 910 |
| FokI | GGATG | 2 cut(s) | 510, 704 |
| Fsp4HI | GCNGC | 1 cut(s) | 910 |
| FspBI | CTAG | 7 cut(s) | 14, 18, 284, 525, 677, 731, 780 |
| GluI | GCNGC | 1 cut(s) | 910 |
| GsuI | CTGGAG | 2 cut(s) | 565, 966 |
| HaeIII | GGCC | 1 cut(s) | 763 |
| HgaI | GACGC | 1 cut(s) | 138 |
| Hin1II | CATG | 9 cut(s) | 41, 48, 176, 304, 342, 535, 594, 703, 955 |
| HinfI | GANTC | 2 cut(s) | 24, 121 |
| HphI | GGTGA | 3 cut(s) | 17, 277, 933 |
| Hpy166II | GTNNAC | 2 cut(s) | 50, 268 |
| Hpy188I | TCNGA | 3 cut(s) | 96, 821, 893 |
| Hpy188III | TCNNGA | 4 cut(s) | 544, 559, 677, 731 |
| Hpy8I | GTNNAC | 2 cut(s) | 50, 268 |
| Hpy99I | CGWCG | 1 cut(s) | 132 |
| HpyAV | CCTTC | 7 cut(s) | 155, 462, 700, 737, 753, 826, 919 |
| HpyCH4III | ACNGT | 1 cut(s) | 917 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 421 |
| HpyF3I | CTNAG | 4 cut(s) | 93, 104, 123, 890 |
| Hsp92II | CATG | 9 cut(s) | 41, 48, 176, 304, 342, 535, 594, 703, 955 |
| LmnI | GCTCC | 2 cut(s) | 353, 947 |
| LpnPI | CCDG | 7 cut(s) | 310, 450, 529, 655, 784, 930, 957 |
| Lsp1109I | GCAGC | 1 cut(s) | 896 |
| LweI | GCATC | 1 cut(s) | 296 |
| MaeI | CTAG | 7 cut(s) | 14, 18, 284, 525, 677, 731, 780 |
| MaeIII | GTNAC | 3 cut(s) | 254, 773, 939 |
| MboII | GAAGA | 5 cut(s) | 19, 375, 580, 943, 946 |
| MhlI | GDGCHC | 1 cut(s) | 52 |
| MlyI | GAGTC | 1 cut(s) | 115 |
| MmeI | TCCRAC | 1 cut(s) | 658 |
| MnlI | CCTC | 3 cut(s) | 14, 414, 514 |
| MseI | TTAA | 4 cut(s) | 87, 200, 408, 964 |
| MslI | CAYNNNNRTG | 3 cut(s) | 71, 242, 439 |
| MspR9I | CCNGG | 1 cut(s) | 945 |
| Mva1269I | GAATGC | 3 cut(s) | 82, 233, 331 |
| MvaI | CCWGG | 1 cut(s) | 945 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 421 |
| NdeI | CATATG | 1 cut(s) | 483 |
| NheI | GCTAGC | 1 cut(s) | 13 |
| NlaIII | CATG | 9 cut(s) | 41, 48, 176, 304, 342, 535, 594, 703, 955 |
| NlaIV | GGNNCC | 1 cut(s) | 949 |
| NmuCI | GTSAC | 1 cut(s) | 939 |
| NspI | RCATGY | 3 cut(s) | 48, 304, 535 |
| PaeI | GCATGC | 1 cut(s) | 304 |
| PceI | AGGCCT | 1 cut(s) | 763 |
| PciI | ACATGT | 1 cut(s) | 44 |
| PctI | GAATGC | 3 cut(s) | 82, 233, 331 |
| PfeI | GAWTC | 1 cut(s) | 24 |
| PkrI | GCNGC | 1 cut(s) | 911 |
| PleI | GAGTC | 1 cut(s) | 115 |
| PpsI | GAGTC | 1 cut(s) | 115 |
| PscI | ACATGT | 1 cut(s) | 44 |
| PshBI | ATTAAT | 1 cut(s) | 87 |
| Psp6I | CCWGG | 1 cut(s) | 943 |
| PspGI | CCWGG | 1 cut(s) | 943 |
| PspN4I | GGNNCC | 1 cut(s) | 949 |
| RseI | CAYNNNNRTG | 3 cut(s) | 71, 242, 439 |
| SaqAI | TTAA | 4 cut(s) | 87, 200, 408, 964 |
| SatI | GCNGC | 1 cut(s) | 910 |
| SchI | GAGTC | 1 cut(s) | 115 |
| ScrFI | CCNGG | 1 cut(s) | 945 |
| SduI | GDGCHC | 1 cut(s) | 52 |
| SfaNI | GCATC | 1 cut(s) | 296 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 71, 242, 439 |
| SmlI | CTYRAG | 1 cut(s) | 149 |
| SmoI | CTYRAG | 1 cut(s) | 149 |
| SphI | GCATGC | 1 cut(s) | 304 |
| SseBI | AGGCCT | 1 cut(s) | 763 |
| SspMI | CTAG | 7 cut(s) | 14, 18, 284, 525, 677, 731, 780 |
| StuI | AGGCCT | 1 cut(s) | 763 |
| StyD4I | CCNGG | 1 cut(s) | 943 |
| StyI | CCWWGG | 1 cut(s) | 793 |
| TaaI | ACNGT | 1 cut(s) | 917 |
| TaqI | TCGA | 1 cut(s) | 59 |
| TfiI | GAWTC | 1 cut(s) | 24 |
| Tru1I | TTAA | 4 cut(s) | 87, 200, 408, 964 |
| Tru9I | TTAA | 4 cut(s) | 87, 200, 408, 964 |
| TseFI | GTSAC | 1 cut(s) | 939 |
| TseI | GCWGC | 1 cut(s) | 909 |
| Tsp45I | GTSAC | 1 cut(s) | 939 |
| TspDTI | ATGAA | 7 cut(s) | 54, 99, 180, 226, 260, 324, 706 |
| VneI | GTGCAC | 1 cut(s) | 48 |
| VspI | ATTAAT | 1 cut(s) | 87 |
| XapI | RAATTY | 2 cut(s) | 249, 505 |
| XbaI | TCTAGA | 2 cut(s) | 676, 730 |
| XceI | RCATGY | 3 cut(s) | 48, 304, 535 |
| XspI | CTAG | 7 cut(s) | 14, 18, 284, 525, 677, 731, 780 |