pycom17g17210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000608
Physical Location & Seq
Forward (+)
15035473 .. 15037958
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17210.17

Sequence Viewer

Length: 1614 bp
ATGACTCAAAACAAACTAGAAAGACTCAAAACAGCACAAAACAATAAACACGAAATAATAAAAGGGGAGTTGGTTTTGACGAATTTAAAACTTAAACAAACAAGTTACAAAAACAAACTAGAGGGTTCTTCTCCACACATGACACATATGACAATTGGACTTAGCGACACAATCAAATTATTCTTATCAAGTTCCCTATATGAACTGCATAATAGAGATACATATCAAAGATCATTAAGTTCTATGAAAATCATAAGCATTGACGTGTTACTTAACATGATCGTGACTAGCGACCTCCACTACTTTTATGCATGCAAACTAAGTGTGCACCCTCAATCAACATACAAGAATAAGTTATCAATCAATCAATCAACATACAAGATCGTTAATTCGAGGCAAGGGATACCTATTCTTAATAGTGACTCGATTCAATTATCGATAGTCAATACACAACCTTTCCGTAACAACTCTTCTAATTGCTTCTTCAATTCTGCTAGCTTTGTCGGTGCCATCCTGTATGGAGAAATAGATATTGGAGAAGTCCCTGGGCAAGCTTCAATAGCAAAATCGATTTCCCTTTGTGGAGGAAAGCCGGGTAACACCTCAGGAAAAACATCAAGAAATTCATTCACAATCAAAATGCATACAACACCCTTAGTTTTCTATGTGATTGCAAAAAGAGCAGCGCTATCTTGGTTTCTTCTTCCTCCAAAACATGCTTTAAGTAGTGGTGACCCGTTTTCTAAATACTTGGATAGCCAATCTATGCCTAAAATCAAGTCAAATGGATATGGATCTAGCATAATTAAATTTGCTTCTAGTCTATGGCTAGAGATTTCTATAGAGCATGCTCTAAATATTGGAGGATCCAATTTTTTGAGCACAAAAGTTGGAAACAAAAATTATACCTTCCACAAGAGCATAGCTAGTTTGCCCCACGGATTCAGTGACAGTAATCGCGAATACTCTTCCTTGAGGTCTATTATCTTTTCTTCTGCTCCGAGACCTTCGTGGTTGAAATATCTCACTCTGAGAAGAAGAATAAGGTTAAACAATTTGTTGTGGAAAAAAACGTTGAATATGACCAGGTTGGCCACACTTGTTACAAGGGTAAGGGCTGGGTCTAGGATTTTTGAAAAAGCTATTACTGCTGCCCCCTTTGTTGCCACCAATTTGGCCATTATATTTAGTTCTTCGCATAATCATTCTTCCACTGTTTGCTCTTACTGCAGCCACTGCGTCTCATTATGTTTTTGCTCAACTCGTAAAGCTACAACCACTGCCTCTTTAGGACTGTCAACGAATCTGTTAGTTTTATCCTCCTCATTAGCAACTGGTAGTGATCGCCTTGAGTTAGCTCAACAAATTCCTTCAACTTTGCATTCTTTATGGTTTGAGGGAAGTATTGGCTATAGAAGGTTTTCTCGAATTAGCCCAAGTCATGGTTGCAACATTGTCAGTTCTCTTGATGTAGTCCCACACATGATCTGCTTCACCGATAAACAAATTGGTACCAAGACTCTGCCTCTAAAGGTCCAGTGGTTCCACCAAAGTTATGAGGATTCAGCTTTTGAAAAATTTTCAAACATGTCAGTCTTCAATTCACCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

59.76

Weight (kDa)

9.82

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1511
AccB1I GGYRCC 2 cut(s) 506, 1511
AccB7I CCANNNNNTGG 1 cut(s) 1442
AccII CGCG 1 cut(s) 960
AclI AACGTT 1 cut(s) 1073
AclWI GGATC 3 cut(s) 802, 861, 874
AcoI YGGCCR 2 cut(s) 1092, 1176
AcsI RAATTY 5 cut(s) 82, 622, 809, 1365, 1577
AfaI GTAC 1 cut(s) 1513
AfeI AGCGCT 1 cut(s) 687
AfiI CCNNNNNNNGG 1 cut(s) 1442
AflIII ACRYGT 2 cut(s) 264, 1587
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 2 cut(s) 544, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 7 cut(s) 498, 554, 926, 1142, 1271, 1358, 1568
AluI AGCT 7 cut(s) 498, 554, 926, 1142, 1271, 1358, 1568
Alw21I GWGCWC 2 cut(s) 330, 884
Alw26I GTCTC 2 cut(s) 997, 1246
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 3 cut(s) 802, 861, 874
AlwNI CAGNNNCTG 1 cut(s) 1236
Aor51HI AGCGCT 1 cut(s) 687
AoxI GGCC 2 cut(s) 1092, 1176
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 3 cut(s) 683, 1151, 1230
ApoI RAATTY 5 cut(s) 82, 622, 809, 1365, 1577
Asp700I GAANNNNTTC 1 cut(s) 1420
Asp718I GGTACC 1 cut(s) 1511
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 1534
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 3 cut(s) 743, 1486, 1596
AsuNHI GCTAGC 1 cut(s) 494
AvaII GGWCC 1 cut(s) 1534
AxyI CCTNAGG 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 2 cut(s) 1094, 1178
BamHI GGATCC 1 cut(s) 866
BanI GGYRCC 2 cut(s) 506, 1511
BarI GAAGNNNNNNTAC 2 cut(s) 454, 486
BbsI GAAGAC 1 cut(s) 1588
Bbv12I GWGCWC 2 cut(s) 330, 884
BbvI GCAGC 3 cut(s) 695, 1138, 1242
BccI CCATC 1 cut(s) 518
BciT130I CCWGG 2 cut(s) 546, 1087
BciVI GTATCC 1 cut(s) 396
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 2 cut(s) 997, 1246
BfaI CTAG 9 cut(s) 17, 119, 288, 495, 798, 819, 830, 927, 1125
BfmI CTRYAG 3 cut(s) 840, 1228, 1411
BfoI RGCGCY 1 cut(s) 689
BfuI GTATCC 1 cut(s) 396
BisI GCNGC 3 cut(s) 684, 1152, 1231
BlsI GCNGC 3 cut(s) 685, 1153, 1232
Bme1390I CCNGG 3 cut(s) 546, 594, 1087
Bme18I GGWCC 1 cut(s) 1534
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 1534
BmiI GGNNCC 4 cut(s) 508, 868, 1513, 1544
BmrFI CCNGG 3 cut(s) 546, 594, 1087
BmtI GCTAGC 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 1588
BpuEI CTTGAG 2 cut(s) 994, 1370
BpuMI CCSGG 1 cut(s) 594
Bsa29I ATCGAT 2 cut(s) 437, 569
BsaBI GATNNNNATC 2 cut(s) 222, 793
BsaI GGTCTC 1 cut(s) 997
BsaJI CCNNGG 3 cut(s) 544, 545, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 1442
Bse1I ACTGG 2 cut(s) 1339, 1537
Bse21I CCTNAGG 1 cut(s) 604
Bse8I GATNNNNATC 2 cut(s) 222, 793
BseBI CCWGG 2 cut(s) 546, 1087
BseCI ATCGAT 2 cut(s) 437, 569
BseDI CCNNGG 3 cut(s) 544, 545, 937
BseGI GGATG 1 cut(s) 510
BseJI GATNNNNATC 2 cut(s) 222, 793
BseLI CCNNNNNNNGG 1 cut(s) 1442
BseMII CTCAG 2 cut(s) 618, 1022
BseNI ACTGG 2 cut(s) 1339, 1537
BseRI GAGGAG 1 cut(s) 1312
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 3 cut(s) 695, 1138, 1242
BseYI CCCAGC 1 cut(s) 1118
Bsh1236I CGCG 1 cut(s) 960
BshFI GGCC 2 cut(s) 1094, 1178
BshNI GGYRCC 2 cut(s) 506, 1511
BshVI ATCGAT 2 cut(s) 437, 569
BsiHKAI GWGCWC 2 cut(s) 330, 884
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 2 cut(s) 527, 1460
BslI CCNNNNNNNGG 1 cut(s) 1442
BsmAI GTCTC 2 cut(s) 997, 1246
BsmBI CGTCTC 1 cut(s) 1246
BsmFI GGGAC 2 cut(s) 527, 1460
BsmI GAATGC 1 cut(s) 1381
BsnI GGCC 2 cut(s) 1094, 1178
Bso31I GGTCTC 1 cut(s) 997
Bsp1286I GDGCHC 2 cut(s) 330, 884
Bsp143I GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
Bsp68I TCGCGA 1 cut(s) 960
BspANI GGCC 2 cut(s) 1094, 1178
BspCNI CTCAG 2 cut(s) 617, 1023
BspDI ATCGAT 2 cut(s) 437, 569
BspFNI CGCG 1 cut(s) 960
BspLI GGNNCC 4 cut(s) 508, 868, 1513, 1544
BspMAI CTGCAG 1 cut(s) 1232
BspOI GCTAGC 1 cut(s) 498
BspPI GGATC 3 cut(s) 802, 861, 874
BspT107I GGYRCC 2 cut(s) 506, 1511
BspTNI GGTCTC 1 cut(s) 997
BsrI ACTGG 2 cut(s) 1339, 1537
BssECI CCNNGG 3 cut(s) 544, 545, 937
BssMI GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
Bst2UI CCWGG 2 cut(s) 546, 1087
Bst4CI ACNGT 3 cut(s) 953, 1216, 1296
Bst6I CTCTTC 2 cut(s) 475, 973
BstAPI GCANNNNNTGC 1 cut(s) 1236
BstC8I GCNNGC 4 cut(s) 313, 496, 552, 849
BstDEI CTNAG 5 cut(s) 161, 320, 604, 655, 1031
BstDSI CCRYGG 1 cut(s) 937
BstEII GGTNACC 1 cut(s) 731
BstF5I GGATG 1 cut(s) 510
BstFNI CGCG 1 cut(s) 960
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 7 cut(s) 233, 282, 384, 797, 869, 1345, 1488
BstMAI GTCTC 2 cut(s) 997, 1246
BstMBI GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
BstMWI GCNNNNNNNGC 5 cut(s) 560, 680, 1148, 1227, 1236
BstNI CCWGG 2 cut(s) 546, 1087
BstNSI RCATGY 4 cut(s) 315, 719, 851, 1591
BstPI GGTNACC 1 cut(s) 731
BstSCI CCNGG 3 cut(s) 544, 592, 1085
BstSFI CTRYAG 3 cut(s) 840, 1228, 1411
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 695, 1138, 1242
BstV2I GAAGAC 1 cut(s) 1588
BstX2I RGATCY 2 cut(s) 794, 866
BstXI CCANNNNNNTGG 1 cut(s) 1174
BstYI RGATCY 2 cut(s) 794, 866
Bsu15I ATCGAT 2 cut(s) 437, 569
Bsu36I CCTNAGG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 1094, 1178
BsuTUI ATCGAT 2 cut(s) 437, 569
BtgI CCRYGG 1 cut(s) 937
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 510
BtsI GCAGTG 2 cut(s) 1234, 1278
BtsIMutI CAGTG 5 cut(s) 952, 1212, 1234, 1278, 1544
BtuMI TCGCGA 1 cut(s) 960
Cac8I GCNNGC 4 cut(s) 313, 496, 552, 849
CaiI CAGNNNCTG 1 cut(s) 1236
CfoI GCGC 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 1534
ClaI ATCGAT 2 cut(s) 437, 569
CseI GACGC 1 cut(s) 1228
CsiI ACCWGGT 1 cut(s) 1085
Csp6I GTAC 1 cut(s) 1512
CviAII CATG 8 cut(s) 139, 277, 312, 716, 848, 1442, 1483, 1588
CviQI GTAC 1 cut(s) 1512
DdeI CTNAG 5 cut(s) 161, 320, 604, 655, 1031
DpnI GATC 7 cut(s) 232, 281, 383, 796, 868, 1344, 1487
DpnII GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
DraI TTTAAA 1 cut(s) 87
EaeI YGGCCR 2 cut(s) 1092, 1176
Eam1104I CTCTTC 2 cut(s) 475, 973
EarI CTCTTC 2 cut(s) 475, 973
Eco31I GGTCTC 1 cut(s) 997
Eco47I GGWCC 1 cut(s) 1534
Eco47III AGCGCT 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 604
Eco91I GGTNACC 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 544, 1085
EcoT22I ATGCAT 2 cut(s) 313, 645
Esp3I CGTCTC 1 cut(s) 1246
FaeI CATG 8 cut(s) 142, 280, 315, 719, 851, 1445, 1486, 1591
FaqI GGGAC 2 cut(s) 527, 1460
FatI CATG 8 cut(s) 138, 276, 311, 715, 847, 1441, 1482, 1587
FauNDI CATATG 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 684, 1152, 1231
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 3 cut(s) 684, 1152, 1231
FspBI CTAG 9 cut(s) 17, 119, 288, 495, 798, 819, 830, 927, 1125
GlaI GCGC 1 cut(s) 687
GluI GCNGC 3 cut(s) 684, 1152, 1231
GsaI CCCAGC 1 cut(s) 1122
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 2 cut(s) 1094, 1178
HapII CCGG 1 cut(s) 593
HgaI GACGC 1 cut(s) 1228
HhaI GCGC 1 cut(s) 688
Hin1II CATG 8 cut(s) 142, 280, 315, 719, 851, 1445, 1486, 1591
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HincII GTYRAC 1 cut(s) 1299
HindII GTYRAC 1 cut(s) 1299
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 8 cut(s) 4, 24, 422, 427, 942, 1303, 1519, 1562
HpaII CCGG 1 cut(s) 593
HphI GGTGA 3 cut(s) 743, 1486, 1596
Hpy166II GTNNAC 2 cut(s) 328, 1299
Hpy188I TCNGA 2 cut(s) 1002, 1032
Hpy188III TCNNGA 6 cut(s) 283, 606, 618, 959, 1425, 1466
Hpy8I GTNNAC 2 cut(s) 328, 1299
HpyAV CCTTC 4 cut(s) 919, 1017, 1380, 1410
HpyCH4III ACNGT 3 cut(s) 953, 1216, 1296
HpyCH4IV ACGT 2 cut(s) 264, 1073
HpyCH4V TGCA 9 cut(s) 208, 311, 315, 328, 643, 674, 1230, 1381, 1449
HpyF10VI GCNNNNNNNGC 5 cut(s) 560, 680, 1148, 1227, 1236
HpyF3I CTNAG 5 cut(s) 161, 320, 604, 655, 1031
HpySE526I ACGT 2 cut(s) 264, 1073
Hsp92II CATG 8 cut(s) 142, 280, 315, 719, 851, 1445, 1486, 1591
HspAI GCGC 1 cut(s) 686
KpnI GGTACC 1 cut(s) 1515
Kzo9I GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 3 cut(s) 695, 1138, 1242
MabI ACCWGGT 1 cut(s) 1085
MaeI CTAG 9 cut(s) 17, 119, 288, 495, 798, 819, 830, 927, 1125
MaeII ACGT 2 cut(s) 264, 1073
MaeIII GTNAC 9 cut(s) 104, 267, 283, 419, 461, 596, 731, 947, 1102
MalI GATC 7 cut(s) 232, 281, 383, 796, 868, 1344, 1487
MboI GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 2 cut(s) 794, 866
MhlI GDGCHC 2 cut(s) 330, 884
MlsI TGGCCA 2 cut(s) 1094, 1178
MluNI TGGCCA 2 cut(s) 1094, 1178
MlyI GAGTC 3 cut(s) 18, 416, 1513
MmeI TCCRAC 1 cut(s) 871
Mox20I TGGCCA 2 cut(s) 1094, 1178
Mph1103I ATGCAT 2 cut(s) 313, 645
MroXI GAANNNNTTC 1 cut(s) 1420
MscI TGGCCA 2 cut(s) 1094, 1178
MslI CAYNNNNRTG 2 cut(s) 263, 281
Msp20I TGGCCA 2 cut(s) 1094, 1178
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 3 cut(s) 546, 594, 1087
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 1381
MvaI CCWGG 2 cut(s) 546, 1087
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 5 cut(s) 560, 680, 1148, 1227, 1236
NciI CCSGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 147
NdeII GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
NheI GCTAGC 1 cut(s) 494
NlaIII CATG 8 cut(s) 142, 280, 315, 719, 851, 1445, 1486, 1591
NlaIV GGNNCC 4 cut(s) 508, 868, 1513, 1544
NmuCI GTSAC 4 cut(s) 283, 419, 731, 947
NruI TCGCGA 1 cut(s) 960
NsiI ATGCAT 2 cut(s) 313, 645
NspI RCATGY 4 cut(s) 315, 719, 851, 1591
PaeI GCATGC 2 cut(s) 315, 851
PasI CCCWGGG 1 cut(s) 545
PciI ACATGT 1 cut(s) 1587
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 1381
PdmI GAANNNNTTC 1 cut(s) 1420
PfeI GAWTC 4 cut(s) 427, 942, 1303, 1562
PflMI CCANNNNNTGG 1 cut(s) 1442
PkrI GCNGC 3 cut(s) 685, 1153, 1232
PleI GAGTC 3 cut(s) 18, 416, 1513
PpsI GAGTC 3 cut(s) 18, 416, 1513
PscI ACATGT 1 cut(s) 1587
Psp1406I AACGTT 1 cut(s) 1073
Psp6I CCWGG 2 cut(s) 544, 1085
PspEI GGTNACC 1 cut(s) 731
PspFI CCCAGC 1 cut(s) 1118
PspGI CCWGG 2 cut(s) 544, 1085
PspN4I GGNNCC 4 cut(s) 508, 868, 1513, 1544
PspPI GGNCC 1 cut(s) 1534
PstI CTGCAG 1 cut(s) 1232
PstNI CAGNNNCTG 1 cut(s) 1236
PsuI RGATCY 2 cut(s) 794, 866
RruI TCGCGA 1 cut(s) 960
RsaI GTAC 1 cut(s) 1513
RsaNI GTAC 1 cut(s) 1512
RseI CAYNNNNRTG 2 cut(s) 263, 281
SatI GCNGC 3 cut(s) 684, 1152, 1231
Sau3AI GATC 7 cut(s) 230, 279, 381, 794, 866, 1342, 1485
Sau96I GGNCC 1 cut(s) 1534
SchI GAGTC 3 cut(s) 18, 416, 1513
ScrFI CCNGG 3 cut(s) 546, 594, 1087
SduI GDGCHC 2 cut(s) 330, 884
SexAI ACCWGGT 1 cut(s) 1085
SfcI CTRYAG 3 cut(s) 840, 1228, 1411
SinI GGWCC 1 cut(s) 1534
SmiMI CAYNNNNRTG 2 cut(s) 263, 281
SmlI CTYRAG 2 cut(s) 973, 1349
SmoI CTYRAG 2 cut(s) 973, 1349
SphI GCATGC 2 cut(s) 315, 851
SspI AATATT 1 cut(s) 859
SspMI CTAG 9 cut(s) 17, 119, 288, 495, 798, 819, 830, 927, 1125
StyD4I CCNGG 3 cut(s) 544, 592, 1085
TaaI ACNGT 3 cut(s) 953, 1216, 1296
TaiI ACGT 2 cut(s) 267, 1076
TaqI TCGA 5 cut(s) 392, 425, 437, 569, 1426
TfiI GAWTC 4 cut(s) 427, 942, 1303, 1562
TscAI CASTG 5 cut(s) 952, 1219, 1241, 1285, 1544
TseFI GTSAC 4 cut(s) 283, 419, 731, 947
TseI GCWGC 3 cut(s) 683, 1151, 1230
Tsp45I GTSAC 4 cut(s) 283, 419, 731, 947
TspDTI ATGAA 3 cut(s) 216, 260, 615
TspGWI ACGGA 2 cut(s) 449, 954
TspRI CASTG 5 cut(s) 952, 1219, 1241, 1285, 1544
Van91I CCANNNNNTGG 1 cut(s) 1442
VneI GTGCAC 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 1534
XapI RAATTY 5 cut(s) 82, 622, 809, 1365, 1577
XceI RCATGY 4 cut(s) 315, 719, 851, 1591
XmnI GAANNNNTTC 1 cut(s) 1420
XspI CTAG 9 cut(s) 17, 119, 288, 495, 798, 819, 830, 927, 1125
Zsp2I ATGCAT 2 cut(s) 313, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.