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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 473 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcsI | RAATTY | 2 cut(s) | 220, 292 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 416 |
| AflIII | ACRYGT | 1 cut(s) | 170 |
| AgsI | TTSAA | 5 cut(s) | 86, 279, 508, 543, 626 |
| AluBI | AGCT | 1 cut(s) | 194 |
| AluI | AGCT | 1 cut(s) | 194 |
| AlwI | GGATC | 1 cut(s) | 405 |
| Ama87I | CYCGRG | 1 cut(s) | 105 |
| ApoI | RAATTY | 2 cut(s) | 220, 292 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 26, 58 |
| AspLEI | GCGC | 1 cut(s) | 99 |
| AspS9I | GGNCC | 2 cut(s) | 407, 665 |
| AsuC2I | CCSGG | 3 cut(s) | 106, 107, 411 |
| AsuNHI | GCTAGC | 1 cut(s) | 194 |
| AvaI | CYCGRG | 1 cut(s) | 105 |
| AvaII | GGWCC | 2 cut(s) | 407, 665 |
| BccI | CCATC | 3 cut(s) | 211, 640, 644 |
| BcnI | CCSGG | 3 cut(s) | 106, 107, 411 |
| BfaI | CTAG | 2 cut(s) | 191, 195 |
| BfmI | CTRYAG | 1 cut(s) | 582 |
| Bme1390I | CCNGG | 3 cut(s) | 106, 107, 411 |
| Bme18I | GGWCC | 2 cut(s) | 407, 665 |
| BmeT110I | CYCGRG | 1 cut(s) | 105 |
| BmgT120I | GGNCC | 2 cut(s) | 407, 665 |
| BmiI | GGNNCC | 1 cut(s) | 185 |
| BmrFI | CCNGG | 3 cut(s) | 106, 107, 411 |
| BmsI | GCATC | 3 cut(s) | 376, 721, 747 |
| BmtI | GCTAGC | 1 cut(s) | 198 |
| BpuMI | CCSGG | 3 cut(s) | 106, 107, 411 |
| Bsa29I | ATCGAT | 1 cut(s) | 701 |
| BsaJI | CCNNGG | 2 cut(s) | 105, 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 416 |
| BseCI | ATCGAT | 1 cut(s) | 701 |
| BseDI | CCNNGG | 2 cut(s) | 105, 106 |
| BseGI | GGATG | 3 cut(s) | 203, 391, 655 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 416 |
| BshVI | ATCGAT | 1 cut(s) | 701 |
| BsiHKCI | CYCGRG | 1 cut(s) | 105 |
| BsiSI | CCGG | 2 cut(s) | 106, 410 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 416 |
| BsmI | GAATGC | 2 cut(s) | 40, 198 |
| BsoBI | CYCGRG | 1 cut(s) | 105 |
| Bsp143I | GATC | 1 cut(s) | 397 |
| BspDI | ATCGAT | 1 cut(s) | 701 |
| BspHI | TCATGA | 1 cut(s) | 121 |
| BspLI | GGNNCC | 1 cut(s) | 185 |
| BspOI | GCTAGC | 1 cut(s) | 198 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BssECI | CCNNGG | 2 cut(s) | 105, 106 |
| BssMI | GATC | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 2 cut(s) | 196, 426 |
| BstDEI | CTNAG | 2 cut(s) | 250, 264 |
| BstF5I | GGATG | 3 cut(s) | 203, 391, 655 |
| BstHHI | GCGC | 1 cut(s) | 99 |
| BstKTI | GATC | 1 cut(s) | 400 |
| BstMBI | GATC | 1 cut(s) | 397 |
| BstNSI | RCATGY | 1 cut(s) | 174 |
| BstSCI | CCNGG | 3 cut(s) | 104, 105, 409 |
| BstSFI | CTRYAG | 1 cut(s) | 582 |
| Bsu15I | ATCGAT | 1 cut(s) | 701 |
| BsuTUI | ATCGAT | 1 cut(s) | 701 |
| BtsCI | GGATG | 3 cut(s) | 203, 391, 655 |
| Cac8I | GCNNGC | 2 cut(s) | 196, 426 |
| CciI | TCATGA | 1 cut(s) | 121 |
| CfoI | GCGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 2 cut(s) | 407, 665 |
| Cfr9I | CCCGGG | 1 cut(s) | 105 |
| ClaI | ATCGAT | 1 cut(s) | 701 |
| CviAII | CATG | 4 cut(s) | 61, 122, 171, 680 |
| CviJI | RGCY | 3 cut(s) | 194, 326, 424 |
| CviKI_1 | RGCY | 3 cut(s) | 194, 326, 424 |
| DdeI | CTNAG | 2 cut(s) | 250, 264 |
| DpnI | GATC | 1 cut(s) | 399 |
| DpnII | GATC | 1 cut(s) | 397 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| Eco47I | GGWCC | 2 cut(s) | 407, 665 |
| Eco88I | CYCGRG | 1 cut(s) | 105 |
| FaeI | CATG | 4 cut(s) | 64, 125, 174, 683 |
| FatI | CATG | 4 cut(s) | 60, 121, 170, 679 |
| FokI | GGATG | 3 cut(s) | 190, 398, 662 |
| FspBI | CTAG | 2 cut(s) | 191, 195 |
| GlaI | GCGC | 1 cut(s) | 98 |
| HapII | CCGG | 2 cut(s) | 106, 410 |
| HhaI | GCGC | 1 cut(s) | 99 |
| Hin1II | CATG | 4 cut(s) | 64, 125, 174, 683 |
| Hin6I | GCGC | 1 cut(s) | 97 |
| HinP1I | GCGC | 1 cut(s) | 97 |
| HincII | GTYRAC | 2 cut(s) | 45, 66 |
| HindII | GTYRAC | 2 cut(s) | 45, 66 |
| HinfI | GANTC | 8 cut(s) | 125, 275, 334, 493, 513, 539, 571, 698 |
| HpaII | CCGG | 2 cut(s) | 106, 410 |
| Hpy166II | GTNNAC | 3 cut(s) | 45, 66, 477 |
| Hpy188III | TCNNGA | 3 cut(s) | 122, 405, 754 |
| Hpy8I | GTNNAC | 3 cut(s) | 45, 66, 477 |
| HpyAV | CCTTC | 1 cut(s) | 197 |
| HpyCH4IV | ACGT | 1 cut(s) | 473 |
| HpyCH4V | TGCA | 3 cut(s) | 161, 389, 760 |
| HpyF3I | CTNAG | 2 cut(s) | 250, 264 |
| HpySE526I | ACGT | 1 cut(s) | 473 |
| Hsp92II | CATG | 4 cut(s) | 64, 125, 174, 683 |
| HspAI | GCGC | 1 cut(s) | 97 |
| Kzo9I | GATC | 1 cut(s) | 397 |
| LpnPI | CCDG | 4 cut(s) | 119, 390, 423, 487 |
| LweI | GCATC | 3 cut(s) | 376, 721, 747 |
| MaeI | CTAG | 2 cut(s) | 191, 195 |
| MaeII | ACGT | 1 cut(s) | 473 |
| MaeIII | GTNAC | 1 cut(s) | 166 |
| MalI | GATC | 1 cut(s) | 399 |
| MboI | GATC | 1 cut(s) | 397 |
| MfeI | CAATTG | 1 cut(s) | 710 |
| MluCI | AATT | 7 cut(s) | 86, 220, 292, 353, 373, 621, 710 |
| MlyI | GAGTC | 3 cut(s) | 343, 487, 507 |
| MnlI | CCTC | 7 cut(s) | 20, 49, 174, 371, 413, 445, 656 |
| MseI | TTAA | 7 cut(s) | 101, 356, 467, 524, 552, 723, 749 |
| MspI | CCGG | 2 cut(s) | 106, 410 |
| MspR9I | CCNGG | 3 cut(s) | 106, 107, 411 |
| MunI | CAATTG | 1 cut(s) | 710 |
| Mva1269I | GAATGC | 2 cut(s) | 40, 198 |
| NciI | CCSGG | 3 cut(s) | 106, 107, 411 |
| NdeII | GATC | 1 cut(s) | 397 |
| NheI | GCTAGC | 1 cut(s) | 194 |
| NlaIII | CATG | 4 cut(s) | 64, 125, 174, 683 |
| NlaIV | GGNNCC | 1 cut(s) | 185 |
| NmuCI | GTSAC | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 174 |
| PagI | TCATGA | 1 cut(s) | 121 |
| PciI | ACATGT | 1 cut(s) | 170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 38 |
| PctI | GAATGC | 2 cut(s) | 40, 198 |
| PfeI | GAWTC | 5 cut(s) | 125, 275, 539, 571, 698 |
| PleI | GAGTC | 3 cut(s) | 342, 487, 507 |
| PpsI | GAGTC | 3 cut(s) | 342, 487, 507 |
| PscI | ACATGT | 1 cut(s) | 170 |
| Psp1406I | AACGTT | 1 cut(s) | 473 |
| PspN4I | GGNNCC | 1 cut(s) | 185 |
| PspPI | GGNCC | 2 cut(s) | 407, 665 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 385, 417 |
| SaqAI | TTAA | 7 cut(s) | 101, 356, 467, 524, 552, 723, 749 |
| Sau3AI | GATC | 1 cut(s) | 397 |
| Sau96I | GGNCC | 2 cut(s) | 407, 665 |
| SchI | GAGTC | 3 cut(s) | 343, 487, 507 |
| ScrFI | CCNGG | 3 cut(s) | 106, 107, 411 |
| SetI | ASST | 7 cut(s) | 189, 196, 437, 476, 506, 530, 667 |
| SfaNI | GCATC | 3 cut(s) | 376, 721, 747 |
| SfcI | CTRYAG | 1 cut(s) | 582 |
| SinI | GGWCC | 2 cut(s) | 407, 665 |
| SmaI | CCCGGG | 1 cut(s) | 107 |
| Sse9I | AATT | 7 cut(s) | 86, 220, 292, 353, 373, 621, 710 |
| SspMI | CTAG | 2 cut(s) | 191, 195 |
| StyD4I | CCNGG | 3 cut(s) | 104, 105, 409 |
| TaiI | ACGT | 1 cut(s) | 476 |
| TaqI | TCGA | 2 cut(s) | 131, 701 |
| TasI | AATT | 7 cut(s) | 86, 220, 292, 353, 373, 621, 710 |
| TfiI | GAWTC | 5 cut(s) | 125, 275, 539, 571, 698 |
| Tru1I | TTAA | 7 cut(s) | 101, 356, 467, 524, 552, 723, 749 |
| Tru9I | TTAA | 7 cut(s) | 101, 356, 467, 524, 552, 723, 749 |
| TseFI | GTSAC | 1 cut(s) | 166 |
| Tsp45I | GTSAC | 1 cut(s) | 166 |
| TspDTI | ATGAA | 7 cut(s) | 17, 49, 110, 117, 213, 709, 711 |
| TspMI | CCCGGG | 1 cut(s) | 105 |
| VpaK11BI | GGWCC | 2 cut(s) | 407, 665 |
| XapI | RAATTY | 2 cut(s) | 220, 292 |
| XceI | RCATGY | 1 cut(s) | 174 |
| XmaI | CCCGGG | 1 cut(s) | 105 |
| XspI | CTAG | 2 cut(s) | 191, 195 |