pycom17g18030

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15510242 .. 15511393
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18030.2

Sequence Viewer

Length: 735 bp
ATGGGTGAAAGGCTAGTTAGAGGGTCCTTCTCCACACATGACATATTTAATTGCATCGCACAATCAACATCAGATTTTCCTTATTTCATTGAATTAGATGGAATACGCATCGCAACCAAATTATCTTTCTCAAGTTCCCTATATGAAACGCATAATAAAGATACATATCAAACATCATTAAGTTCTATGAAAATTATAAGCATTGACAAGGCATTCATCACTATGAAACTGAATAACTATTACGTGAAACTCCCTTATACTCTAGCATCAAATTCATGCATGCAAATTAAGTGTCGACCCTCAACCAATATACATAAACAAATAAAACATATAATCATGGCTTCGAATTCACCTCCAACTAAAAAGAAATTAGTTCCACATAATACACCTAGAAACACTCCACACTCCAATGGCATGCACGGCATTCCCTTGGATGGTAGATTGCACAAGTCTTCTTCTCCTTCCTTCCTTGCTTGCGGCACTAGGGTGATATGGTGTGAATTATGGTGTTTGATGGCTAGGTTTTGCACAATTTATGAAGGAAAAGGATTAAATCTGAAAACCAAAGAGAATATGGAGAGGGTGCGGCTCCTTTGTAGGAGGAAGATAAGGCTTCTAGAAAGGATGTGTAGAAGAGGGATTATAACTCCTAAACCTTCAAGAAATGGCCTATATGCGGCACACAAAGGGATTAGGCTCCTAGAATCTAAGTTATATGTTGAAATGTATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.02

Weight (kDa)

9.88

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 197, 644
AccI GTMKAC 1 cut(s) 295
AciI CCGC 3 cut(s) 477, 586, 677
AcsI RAATTY 2 cut(s) 271, 346
AfiI CCNNNNNNNGG 2 cut(s) 434, 676
AgsI TTSAA 3 cut(s) 92, 660, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AleI CACNNNNGTG 1 cut(s) 485
AoxI GGCC 1 cut(s) 667
ApoI RAATTY 2 cut(s) 271, 346
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 17, 342, 499
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 444
BccI CCATC 3 cut(s) 92, 428, 508
BceAI ACGGC 1 cut(s) 436
BfaI CTAG 7 cut(s) 14, 263, 390, 483, 519, 617, 701
BisI GCNGC 3 cut(s) 478, 587, 678
BlsI GCNGC 3 cut(s) 479, 588, 679
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 25, 590, 698
BmsI GCATC 3 cut(s) 63, 117, 275
BpiI GAAGAC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 429
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 676
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 439, 630
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 434, 676
BshFI GGCC 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 434, 676
BsmI GAATGC 2 cut(s) 212, 423
BsnI GGCC 1 cut(s) 669
Bsp119I TTCGAA 1 cut(s) 344
BspACI CCGC 3 cut(s) 477, 586, 677
BspANI GGCC 1 cut(s) 669
BspLI GGNNCC 3 cut(s) 25, 590, 698
BspT104I TTCGAA 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 281, 416, 475
BstDEI CTNAG 1 cut(s) 708
BstF5I GGATG 2 cut(s) 439, 630
BstMWI GCNNNNNNNGC 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 283, 418
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 1 cut(s) 669
BtgZI GCGATG 2 cut(s) 40, 94
BtsCI GGATG 2 cut(s) 439, 630
Cac8I GCNNGC 3 cut(s) 281, 416, 475
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 5 cut(s) 38, 276, 280, 337, 415
CviJI RGCY 7 cut(s) 13, 341, 518, 589, 613, 669, 697
CviKI_1 RGCY 7 cut(s) 13, 341, 518, 589, 613, 669, 697
DdeI CTNAG 1 cut(s) 708
Eam1104I CTCTTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 5 cut(s) 41, 279, 283, 340, 418
FatI CATG 5 cut(s) 37, 275, 279, 336, 414
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 478, 587, 678
FokI GGATG 2 cut(s) 446, 637
Fsp4HI GCNGC 3 cut(s) 478, 587, 678
FspBI CTAG 7 cut(s) 14, 263, 390, 483, 519, 617, 701
GluI GCNGC 3 cut(s) 478, 587, 678
HaeIII GGCC 1 cut(s) 669
Hin1II CATG 5 cut(s) 41, 279, 283, 340, 418
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 1 cut(s) 704
HphI GGTGA 3 cut(s) 17, 342, 499
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 73, 558
Hpy188III TCNNGA 2 cut(s) 617, 660
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 5 cut(s) 37, 471, 475, 533, 666
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 6 cut(s) 54, 279, 283, 418, 445, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 420
HpyF3I CTNAG 1 cut(s) 708
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 5 cut(s) 41, 279, 283, 340, 418
LmnI GCTCC 2 cut(s) 594, 702
LweI GCATC 3 cut(s) 63, 117, 275
MaeI CTAG 7 cut(s) 14, 263, 390, 483, 519, 617, 701
MaeII ACGT 1 cut(s) 243
MboII GAAGA 4 cut(s) 444, 447, 616, 645
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 6 cut(s) 14, 310, 363, 573, 594, 629
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 4 cut(s) 48, 179, 288, 551
MslI CAYNNNNRTG 3 cut(s) 221, 408, 485
Mva1269I GAATGC 2 cut(s) 212, 423
MwoI GCNNNNNNNGC 1 cut(s) 420
NlaIII CATG 5 cut(s) 41, 279, 283, 340, 418
NlaIV GGNNCC 3 cut(s) 25, 590, 698
NsiI ATGCAT 1 cut(s) 281
NspI RCATGY 2 cut(s) 283, 418
NspV TTCGAA 1 cut(s) 344
OliI CACNNNNGTG 1 cut(s) 485
PaeI GCATGC 2 cut(s) 283, 418
PctI GAATGC 2 cut(s) 212, 423
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 3 cut(s) 479, 588, 679
Ppu21I YACGTR 1 cut(s) 244
PpuMI RGGWCCY 1 cut(s) 24
PsiI TTATAA 2 cut(s) 197, 644
Psp5II RGGWCCY 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 25, 590, 698
PspPI GGNCC 1 cut(s) 24
PspPPI RGGWCCY 1 cut(s) 24
RseI CAYNNNNRTG 3 cut(s) 221, 408, 485
SalI GTCGAC 1 cut(s) 294
SaqAI TTAA 4 cut(s) 48, 179, 288, 551
SatI GCNGC 3 cut(s) 478, 587, 678
Sau96I GGNCC 1 cut(s) 24
SetI ASST 5 cut(s) 246, 355, 391, 524, 658
SfaNI GCATC 3 cut(s) 63, 117, 275
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 3 cut(s) 221, 408, 485
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 2 cut(s) 283, 418
SsiI CCGC 3 cut(s) 477, 586, 677
SspMI CTAG 7 cut(s) 14, 263, 390, 483, 519, 617, 701
StyI CCWWGG 1 cut(s) 429
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 295, 344
TauI GCSGC 3 cut(s) 480, 589, 680
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 4 cut(s) 48, 179, 288, 551
Tru9I TTAA 4 cut(s) 48, 179, 288, 551
TspDTI ATGAA 7 cut(s) 76, 159, 203, 205, 239, 264, 552
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 271, 346
XbaI TCTAGA 1 cut(s) 616
XceI RCATGY 2 cut(s) 283, 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 295
XspI CTAG 7 cut(s) 14, 263, 390, 483, 519, 617, 701
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.