pycom13g25920

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
22649782 .. 22651055
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g25920.8

Sequence Viewer

Length: 858 bp
ATGGGGAGAATGAGGAATAATTCGAATGGATGTGTATGGCTGTCTAGAATCTCCAATATGTGCGGCAGATTATGTATATATAGAGGGAGAAAGGTTAAGGCAATAAAGGAAAAGGAAAGGAAAGTTGCGGCATTGACTAGAATAAAAGGGGAAAGAAGATATATGACTAGGATAGTGCAAGGAATCTTTGGTTTGTGTCCTAAAATGCATAAGATACCTCCAAAGTTGAAACCTTGGCTTAACTTTCCTACTTCAATTAGGAAACCTTCTTTGACTAGGAAGCCTTCTTTGATTAGGAATCCTACTTTGATTAGGAATCCTTCTTTGATTAGGAATCCTACTTTGATTAGGAATCCTACTTTGATTAGGAATCCTAACATCTTTAAGTCTTCAATTTCGTCCATTCCTTTTGCTCCAAGCATATGCTATCCATTCCAACCATATGAACCTAAAAACACAGAAAATATCGCCGAAATATGCTCTTATCAAATTCCCCCACACTTAGCTTTTGCTAGTCCTCGAGCAAAACAAAACAAAGGAAACAAAATAAACAAAACAAAACAAACTCTAGACCTTCCAACATGTACCTCAGGGATTTCCAACGAACATGACACATTAAAGAACATCATTCCCACGGTTTTTGGCTTTCTTTACACTTTAGCCTTAGAGAATTCCCTCAATTCCTTACTAGAATGTTCTCAATTTTCACACAGATGTTCTAACTACACTCCCTACACTAGGTATATATGTTATAACAAAGAAAGCATTTTCTGGATTTACGACAATGATATAACCAATGATTCCATATGCTCATACCAAATTCAAACTCCACATATTGAACACATAACATTAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.88

Weight (kDa)

9.97

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AciI CCGC 2 cut(s) 63, 128
AcsI RAATTY 3 cut(s) 489, 670, 819
AfaI GTAC 1 cut(s) 586
AfiI CCNNNNNNNGG 1 cut(s) 738
AflIII ACRYGT 1 cut(s) 581
AgsI TTSAA 5 cut(s) 229, 255, 393, 824, 839
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 519
ApoI RAATTY 3 cut(s) 489, 670, 819
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 519
AxyI CCTNAGG 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 381
BfaI CTAG 8 cut(s) 45, 138, 168, 276, 513, 569, 689, 738
BisI GCNGC 2 cut(s) 64, 129
BlsI GCNGC 2 cut(s) 65, 130
BmeT110I CYCGRG 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 233, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 738
Bse21I CCTNAGG 1 cut(s) 589
BseDI CCNNGG 2 cut(s) 233, 633
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 738
BsoBI CYCGRG 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 23
BspACI CCGC 2 cut(s) 63, 128
BspCNI CTCAG 1 cut(s) 602
BspT104I TTCGAA 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 233, 633
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 637
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 3 cut(s) 502, 589, 664
BstDSI CCRYGG 1 cut(s) 633
BstENI CCTNNNNNAGG 1 cut(s) 736
BstF5I GGATG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 585
BstV2I GAAGAC 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 589
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 1 cut(s) 35
Csp6I GTAC 1 cut(s) 585
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviAII CATG 2 cut(s) 582, 608
CviJI RGCY 6 cut(s) 40, 238, 283, 506, 645, 662
CviKI_1 RGCY 6 cut(s) 40, 238, 283, 506, 645, 662
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 3 cut(s) 502, 589, 664
Eco130I CCWWGG 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 589
Eco88I CYCGRG 1 cut(s) 519
EcoNI CCTNNNNNAGG 1 cut(s) 736
EcoRI GAATTC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 585, 611
FatI CATG 2 cut(s) 581, 607
FauNDI CATATG 3 cut(s) 422, 442, 806
Fnu4HI GCNGC 2 cut(s) 64, 129
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 64, 129
FspBI CTAG 8 cut(s) 45, 138, 168, 276, 513, 569, 689, 738
GluI GCNGC 2 cut(s) 64, 129
Hin1II CATG 2 cut(s) 585, 611
HinfI GANTC 8 cut(s) 48, 183, 298, 316, 334, 352, 370, 800
Hpy188III TCNNGA 3 cut(s) 45, 569, 772
HpyAV CCTTC 4 cut(s) 276, 294, 330, 584
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4V TGCA 2 cut(s) 178, 208
HpyF3I CTNAG 3 cut(s) 502, 589, 664
Hsp92II CATG 2 cut(s) 585, 611
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 2 cut(s) 576, 757
MaeI CTAG 8 cut(s) 45, 138, 168, 276, 513, 569, 689, 738
MboII GAAGA 2 cut(s) 168, 381
MluCI AATT 8 cut(s) 19, 255, 393, 489, 670, 679, 701, 819
MmeI TCCRAC 3 cut(s) 460, 602, 624
MnlI CCTC 6 cut(s) 6, 77, 228, 528, 598, 686
Mph1103I ATGCAT 1 cut(s) 210
MseI TTAA 5 cut(s) 96, 240, 384, 617, 851
MslI CAYNNNNRTG 1 cut(s) 712
NdeI CATATG 3 cut(s) 422, 442, 806
NlaIII CATG 2 cut(s) 585, 611
NsiI ATGCAT 1 cut(s) 210
NspI RCATGY 1 cut(s) 585
NspV TTCGAA 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 519
PciI ACATGT 1 cut(s) 581
PfeI GAWTC 8 cut(s) 48, 183, 298, 316, 334, 352, 370, 800
PkrI GCNGC 2 cut(s) 65, 130
PscI ACATGT 1 cut(s) 581
PsiI TTATAA 1 cut(s) 753
PspXI VCTCGAGB 1 cut(s) 519
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
RseI CAYNNNNRTG 1 cut(s) 712
SaqAI TTAA 5 cut(s) 96, 240, 384, 617, 851
SatI GCNGC 2 cut(s) 64, 129
SetI ASST 9 cut(s) 96, 220, 235, 268, 451, 508, 576, 590, 743
Sfr274I CTCGAG 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 8 cut(s) 19, 255, 393, 489, 670, 679, 701, 819
SsiI CCGC 2 cut(s) 63, 128
SspMI CTAG 8 cut(s) 45, 138, 168, 276, 513, 569, 689, 738
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 637
TaqI TCGA 2 cut(s) 23, 520
TasI AATT 8 cut(s) 19, 255, 393, 489, 670, 679, 701, 819
TauI GCSGC 2 cut(s) 66, 131
TfiI GAWTC 8 cut(s) 48, 183, 298, 316, 334, 352, 370, 800
Tru1I TTAA 5 cut(s) 96, 240, 384, 617, 851
Tru9I TTAA 5 cut(s) 96, 240, 384, 617, 851
TspDTI ATGAA 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 736
XapI RAATTY 3 cut(s) 489, 670, 819
XbaI TCTAGA 2 cut(s) 44, 568
XceI RCATGY 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 519
XspI CTAG 8 cut(s) 45, 138, 168, 276, 513, 569, 689, 738
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.