pycom17g17290

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
15084289 .. 15085750
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17290.2

Sequence Viewer

Length: 891 bp
ATGTGGAGTGATATTCCATACGTGAGGTCTAAAGAACAATTAGCAGATGTGTTAACTCATGCGGTTTCAGCAAAGGTGTTTCAAGACTCACTTGACAAGTTGGTTATTCCTTGTATAATTGGGATTCTTATTTCCTGTTATGTGGGATATTGTATAACTATATATTTACCTCCTAGAGAGAAGAATAAAAATACAATTCAAACCCTAAATACTTTTATCTGTTATAACCGGCACGTAGAGAGATCACAGGCCAGATCATTCTTTACCTTTTCCTTTTTACTACTTTATTTATTGATATATGTGTTTAATGTATTTGGAATCATTTATATTATCCTACAGGATGTTTTTAGAGACAATTTTGAGGAAACACATATCGGGGAAATTAGGTGGAAATTTATAGCCTTACAAACCTTTCCATCCTTATATATTGAATTAGTTTCCGCAACAATGGAAGGACCTTGCTGGTTGCAAAATGTGTACTTAAAGAGAGAAGAAATTGTCACCATAACACACAAAAATTATCATAACTCATGTATCATATGCATGACTGGAAGTCTGGAACTAAGGTTATACTTACGAACCCCATTATTGATGCGAGAATTTATACGCACACAAATTAAACCCTCTTTTCGTCAAATTGTAGAGGGATTACTAGACTCAAAGAATGCAAAACTAAATTTTAAAACACTAAGACAAACCAAAAGACTCAAACATCACCCAAAACACTCAAAACTTTGGACGAATTTGTGCAACAAATTGAATCAAAACACTTATAAACACAAACTAAGACACTTTCTAACTAATTTGGACAATAAAAAACTTGGAATTAAAACAGATTCTAAAAACGAAATTGATGAAATAGATCCCAGTTATGACTTCAACGAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

35.07

Weight (kDa)

9.27

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 225, 774
AciI CCGC 2 cut(s) 62, 441
AclWI GGATC 1 cut(s) 857
AcsI RAATTY 4 cut(s) 392, 599, 676, 742
AfaI GTAC 1 cut(s) 479
AgsI TTSAA 5 cut(s) 83, 200, 431, 760, 880
AhdI GACNNNNNGTC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 1 cut(s) 857
AoxI GGCC 1 cut(s) 249
ApoI RAATTY 4 cut(s) 392, 599, 676, 742
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 493, 707
AvaII GGWCC 1 cut(s) 455
BaeI ACNNNNGTAYC 2 cut(s) 517, 550
BccI CCATC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 174, 653
BfmI CTRYAG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 455
BmeRI GACNNNNNGTC 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 455
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 861
BsaAI YACGTR 2 cut(s) 22, 235
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 553, 867
BseGI GGATG 2 cut(s) 346, 416
BseNI ACTGG 2 cut(s) 553, 867
BshFI GGCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 670
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 242, 254, 862
BspACI CCGC 2 cut(s) 62, 441
BspANI GGCC 1 cut(s) 251
BspPI GGATC 1 cut(s) 857
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 553, 867
BssAI RCCGGY 1 cut(s) 228
BssMI GATC 3 cut(s) 242, 254, 862
BstBAI YACGTR 2 cut(s) 22, 235
BstDEI CTNAG 3 cut(s) 563, 689, 785
BstF5I GGATG 2 cut(s) 346, 416
BstKTI GATC 3 cut(s) 245, 257, 865
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 3 cut(s) 242, 254, 862
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 2 cut(s) 346, 416
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 478
CviAII CATG 3 cut(s) 59, 531, 544
CviJI RGCY 2 cut(s) 251, 401
CviKI_1 RGCY 2 cut(s) 251, 401
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 3 cut(s) 563, 689, 785
DpnI GATC 3 cut(s) 244, 256, 864
DpnII GATC 3 cut(s) 242, 254, 862
DraI TTTAAA 1 cut(s) 682
DriI GACNNNNNGTC 1 cut(s) 552
Eam1105I GACNNNNNGTC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 455
EcoT22I ATGCAT 1 cut(s) 545
FaeI CATG 3 cut(s) 62, 534, 547
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 3 cut(s) 58, 530, 543
FauNDI CATATG 1 cut(s) 539
FokI GGATG 2 cut(s) 353, 403
FspBI CTAG 2 cut(s) 174, 653
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 229
Hin1II CATG 3 cut(s) 62, 534, 547
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 7 cut(s) 86, 124, 318, 656, 705, 760, 836
HpaI GTTAAC 1 cut(s) 54
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 493, 707
Hpy166II GTNNAC 2 cut(s) 54, 478
Hpy188III TCNNGA 2 cut(s) 83, 557
Hpy8I GTNNAC 2 cut(s) 54, 478
HpyAV CCTTC 1 cut(s) 446
HpyCH4IV ACGT 2 cut(s) 21, 234
HpyCH4V TGCA 4 cut(s) 469, 543, 668, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 563, 689, 785
HpySE526I ACGT 2 cut(s) 21, 234
Hsp92II CATG 3 cut(s) 62, 534, 547
KspAI GTTAAC 1 cut(s) 54
Kzo9I GATC 3 cut(s) 242, 254, 862
LpnPI CCDG 9 cut(s) 148, 233, 242, 265, 323, 448, 534, 542, 880
LweI GCATC 1 cut(s) 582
MaeI CTAG 2 cut(s) 174, 653
MaeII ACGT 2 cut(s) 21, 234
MaeIII GTNAC 1 cut(s) 499
MalI GATC 3 cut(s) 244, 256, 864
MboI GATC 3 cut(s) 242, 254, 862
MboII GAAGA 2 cut(s) 193, 503
MflI RGATCY 1 cut(s) 862
MlyI GAGTC 3 cut(s) 80, 650, 699
MnlI CCTC 5 cut(s) 18, 180, 355, 634, 637
Mph1103I ATGCAT 1 cut(s) 545
MseI TTAA 6 cut(s) 53, 306, 482, 618, 681, 828
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 670
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeI CATATG 1 cut(s) 539
NdeII GATC 3 cut(s) 242, 254, 862
NlaIII CATG 3 cut(s) 62, 534, 547
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 1 cut(s) 545
PctI GAATGC 1 cut(s) 670
PfeI GAWTC 4 cut(s) 124, 318, 760, 836
PleI GAGTC 3 cut(s) 80, 650, 699
PpsI GAGTC 3 cut(s) 80, 650, 699
Ppu21I YACGTR 2 cut(s) 22, 235
PpuMI RGGWCCY 1 cut(s) 455
PsiI TTATAA 2 cut(s) 225, 774
Psp5II RGGWCCY 1 cut(s) 455
PspPI GGNCC 1 cut(s) 455
PspPPI RGGWCCY 1 cut(s) 455
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 6 cut(s) 53, 306, 482, 618, 681, 828
Sau3AI GATC 3 cut(s) 242, 254, 862
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 3 cut(s) 80, 650, 699
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 1 cut(s) 335
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 542
SsiI CCGC 2 cut(s) 62, 441
SspMI CTAG 2 cut(s) 174, 653
TaiI ACGT 2 cut(s) 24, 237
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 4 cut(s) 124, 318, 760, 836
Tru1I TTAA 6 cut(s) 53, 306, 482, 618, 681, 828
Tru9I TTAA 6 cut(s) 53, 306, 482, 618, 681, 828
TseFI GTSAC 1 cut(s) 499
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 870
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 4 cut(s) 392, 599, 676, 742
XspI CTAG 2 cut(s) 174, 653
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.