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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 276 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 393 |
| AciI | CCGC | 1 cut(s) | 491 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AcsI | RAATTY | 4 cut(s) | 191, 257, 628, 635 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 118, 213, 785 |
| AflII | CTTAAG | 1 cut(s) | 56 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 85, 117 |
| AluBI | AGCT | 2 cut(s) | 675, 951 |
| AluI | AGCT | 2 cut(s) | 675, 951 |
| ApeKI | GCWGC | 1 cut(s) | 488 |
| ApoI | RAATTY | 4 cut(s) | 191, 257, 628, 635 |
| AspS9I | GGNCC | 1 cut(s) | 693 |
| AsuHPI | GGTGA | 1 cut(s) | 436 |
| AvaII | GGWCC | 1 cut(s) | 693 |
| AxyI | CCTNAGG | 1 cut(s) | 540 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 829, 861 |
| BbsI | GAAGAC | 2 cut(s) | 349, 906 |
| BbvI | GCAGC | 1 cut(s) | 475 |
| BccI | CCATC | 1 cut(s) | 215 |
| BceAI | ACGGC | 2 cut(s) | 723, 754 |
| BciVI | GTATCC | 1 cut(s) | 726 |
| BfaI | CTAG | 3 cut(s) | 398, 780, 855 |
| BfrI | CTTAAG | 1 cut(s) | 56 |
| BfuI | GTATCC | 1 cut(s) | 726 |
| BisI | GCNGC | 2 cut(s) | 489, 492 |
| BlsI | GCNGC | 2 cut(s) | 490, 493 |
| Bme18I | GGWCC | 1 cut(s) | 693 |
| BmgT120I | GGNCC | 1 cut(s) | 693 |
| BmiI | GGNNCC | 2 cut(s) | 695, 1012 |
| BmsI | GCATC | 1 cut(s) | 994 |
| BpiI | GAAGAC | 2 cut(s) | 349, 906 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1000 |
| BsaJI | CCNNGG | 3 cut(s) | 346, 812, 1005 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 118, 213, 785 |
| Bse1I | ACTGG | 1 cut(s) | 258 |
| Bse21I | CCTNAGG | 1 cut(s) | 540 |
| BseDI | CCNNGG | 3 cut(s) | 346, 812, 1005 |
| BseGI | GGATG | 2 cut(s) | 78, 448 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 118, 213, 785 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseNI | ACTGG | 1 cut(s) | 258 |
| BseRI | GAGGAG | 2 cut(s) | 356, 359 |
| BseXI | GCAGC | 1 cut(s) | 475 |
| BslFI | GGGAC | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 118, 213, 785 |
| BsmFI | GGGAC | 1 cut(s) | 95 |
| BsmI | GAATGC | 3 cut(s) | 97, 229, 338 |
| Bsp19I | CCATGG | 1 cut(s) | 1005 |
| BspACI | CCGC | 1 cut(s) | 491 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspLI | GGNNCC | 2 cut(s) | 695, 1012 |
| BspTI | CTTAAG | 1 cut(s) | 56 |
| BsrI | ACTGG | 1 cut(s) | 258 |
| BssECI | CCNNGG | 3 cut(s) | 346, 812, 1005 |
| BssT1I | CCWWGG | 3 cut(s) | 346, 812, 1005 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 169, 216 |
| BstAFI | CTTAAG | 1 cut(s) | 56 |
| BstDEI | CTNAG | 6 cut(s) | 45, 378, 540, 554, 726, 1000 |
| BstDSI | CCRYGG | 1 cut(s) | 1005 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 783 |
| BstF5I | GGATG | 2 cut(s) | 78, 448 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1001 |
| BstV1I | GCAGC | 1 cut(s) | 475 |
| BstV2I | GAAGAC | 2 cut(s) | 349, 906 |
| Bsu36I | CCTNAGG | 1 cut(s) | 540 |
| BsuI | GTATCC | 1 cut(s) | 726 |
| BtgI | CCRYGG | 1 cut(s) | 1005 |
| BtsCI | GGATG | 2 cut(s) | 78, 448 |
| Cfr13I | GGNCC | 1 cut(s) | 693 |
| CviAII | CATG | 4 cut(s) | 118, 151, 287, 1006 |
| CviJI | RGCY | 8 cut(s) | 351, 438, 488, 545, 675, 817, 951, 1004 |
| CviKI_1 | RGCY | 8 cut(s) | 351, 438, 488, 545, 675, 817, 951, 1004 |
| DdeI | CTNAG | 6 cut(s) | 45, 378, 540, 554, 726, 1000 |
| DraI | TTTAAA | 1 cut(s) | 679 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 393 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 393 |
| Eco130I | CCWWGG | 3 cut(s) | 346, 812, 1005 |
| Eco47I | GGWCC | 1 cut(s) | 693 |
| Eco81I | CCTNAGG | 1 cut(s) | 540 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 783 |
| EcoO109I | RGGNCCY | 1 cut(s) | 693 |
| EcoRI | GAATTC | 1 cut(s) | 628 |
| EcoT14I | CCWWGG | 3 cut(s) | 346, 812, 1005 |
| EcoT22I | ATGCAT | 1 cut(s) | 987 |
| ErhI | CCWWGG | 3 cut(s) | 346, 812, 1005 |
| FaeI | CATG | 4 cut(s) | 121, 154, 290, 1009 |
| FaqI | GGGAC | 1 cut(s) | 95 |
| FatI | CATG | 4 cut(s) | 117, 150, 286, 1005 |
| Fnu4HI | GCNGC | 2 cut(s) | 489, 492 |
| FokI | GGATG | 2 cut(s) | 85, 455 |
| Fsp4HI | GCNGC | 2 cut(s) | 489, 492 |
| FspBI | CTAG | 3 cut(s) | 398, 780, 855 |
| GluI | GCNGC | 2 cut(s) | 489, 492 |
| Hin1II | CATG | 4 cut(s) | 121, 154, 290, 1009 |
| HinfI | GANTC | 4 cut(s) | 394, 859, 877, 895 |
| HphI | GGTGA | 1 cut(s) | 436 |
| Hpy188I | TCNGA | 3 cut(s) | 48, 610, 634 |
| Hpy188III | TCNNGA | 2 cut(s) | 384, 588 |
| HpyAV | CCTTC | 8 cut(s) | 371, 440, 478, 594, 611, 617, 707, 855 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 169, 216 |
| HpyCH4IV | ACGT | 3 cut(s) | 280, 312, 342 |
| HpyCH4V | TGCA | 4 cut(s) | 229, 705, 757, 985 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1001 |
| HpyF3I | CTNAG | 6 cut(s) | 45, 378, 540, 554, 726, 1000 |
| HpySE526I | ACGT | 3 cut(s) | 280, 312, 342 |
| Hsp92II | CATG | 4 cut(s) | 121, 154, 290, 1009 |
| LmnI | GCTCC | 2 cut(s) | 943, 980 |
| LpnPI | CCDG | 1 cut(s) | 239 |
| Lsp1109I | GCAGC | 1 cut(s) | 475 |
| LweI | GCATC | 1 cut(s) | 994 |
| MaeI | CTAG | 3 cut(s) | 398, 780, 855 |
| MaeII | ACGT | 3 cut(s) | 280, 312, 342 |
| MaeIII | GTNAC | 3 cut(s) | 25, 169, 381 |
| MboII | GAAGA | 4 cut(s) | 93, 349, 540, 906 |
| MfeI | CAATTG | 1 cut(s) | 866 |
| MlyI | GAGTC | 1 cut(s) | 403 |
| MmeI | TCCRAC | 1 cut(s) | 457 |
| MnlI | CCTC | 8 cut(s) | 54, 377, 380, 428, 684, 873, 891, 909 |
| Mph1103I | ATGCAT | 1 cut(s) | 987 |
| MseI | TTAA | 7 cut(s) | 39, 57, 147, 218, 338, 678, 819 |
| MslI | CAYNNNNRTG | 1 cut(s) | 155 |
| MspCI | CTTAAG | 1 cut(s) | 56 |
| MunI | CAATTG | 1 cut(s) | 866 |
| Mva1269I | GAATGC | 3 cut(s) | 97, 229, 338 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1001 |
| NcoI | CCATGG | 1 cut(s) | 1005 |
| NlaIII | CATG | 4 cut(s) | 121, 154, 290, 1009 |
| NlaIV | GGNNCC | 2 cut(s) | 695, 1012 |
| NmuCI | GTSAC | 2 cut(s) | 25, 381 |
| NsiI | ATGCAT | 1 cut(s) | 987 |
| PctI | GAATGC | 3 cut(s) | 97, 229, 338 |
| PfeI | GAWTC | 3 cut(s) | 859, 877, 895 |
| PkrI | GCNGC | 2 cut(s) | 490, 493 |
| PleI | GAGTC | 1 cut(s) | 402 |
| PpsI | GAGTC | 1 cut(s) | 402 |
| PpuMI | RGGWCCY | 1 cut(s) | 693 |
| PsiI | TTATAA | 1 cut(s) | 276 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| Psp5II | RGGWCCY | 1 cut(s) | 693 |
| PspN4I | GGNNCC | 2 cut(s) | 695, 1012 |
| PspPI | GGNCC | 1 cut(s) | 693 |
| PspPPI | RGGWCCY | 1 cut(s) | 693 |
| RseI | CAYNNNNRTG | 1 cut(s) | 155 |
| SaqAI | TTAA | 7 cut(s) | 39, 57, 147, 218, 338, 678, 819 |
| SatI | GCNGC | 2 cut(s) | 489, 492 |
| Sau96I | GGNCC | 1 cut(s) | 693 |
| SchI | GAGTC | 1 cut(s) | 403 |
| SfaNI | GCATC | 1 cut(s) | 994 |
| SinI | GGWCC | 1 cut(s) | 693 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 155 |
| SmlI | CTYRAG | 1 cut(s) | 56 |
| SmoI | CTYRAG | 1 cut(s) | 56 |
| SsiI | CCGC | 1 cut(s) | 491 |
| SspI | AATATT | 1 cut(s) | 971 |
| SspMI | CTAG | 3 cut(s) | 398, 780, 855 |
| StyI | CCWWGG | 3 cut(s) | 346, 812, 1005 |
| TaaI | ACNGT | 3 cut(s) | 25, 169, 216 |
| TaiI | ACGT | 3 cut(s) | 283, 315, 345 |
| TaqI | TCGA | 1 cut(s) | 330 |
| TauI | GCSGC | 1 cut(s) | 494 |
| TfiI | GAWTC | 3 cut(s) | 859, 877, 895 |
| Tru1I | TTAA | 7 cut(s) | 39, 57, 147, 218, 338, 678, 819 |
| Tru9I | TTAA | 7 cut(s) | 39, 57, 147, 218, 338, 678, 819 |
| TseFI | GTSAC | 2 cut(s) | 25, 381 |
| TseI | GCWGC | 1 cut(s) | 488 |
| Tsp45I | GTSAC | 2 cut(s) | 25, 381 |
| TspDTI | ATGAA | 2 cut(s) | 257, 459 |
| TspGWI | ACGGA | 1 cut(s) | 496 |
| Vha464I | CTTAAG | 1 cut(s) | 56 |
| VpaK11BI | GGWCC | 1 cut(s) | 693 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 783 |
| XapI | RAATTY | 4 cut(s) | 191, 257, 628, 635 |
| XspI | CTAG | 3 cut(s) | 398, 780, 855 |
| Zsp2I | ATGCAT | 1 cut(s) | 987 |