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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 195 |
| AccIII | TCCGGA | 1 cut(s) | 1040 |
| AclI | AACGTT | 1 cut(s) | 1789 |
| AfaI | GTAC | 2 cut(s) | 1144, 1839 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1152, 1545 |
| AflIII | ACRYGT | 3 cut(s) | 83, 855, 907 |
| AleI | CACNNNNGTG | 1 cut(s) | 242 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 412, 444, 1022, 1054 |
| AluBI | AGCT | 2 cut(s) | 657, 734 |
| AluI | AGCT | 2 cut(s) | 657, 734 |
| Alw21I | GWGCWC | 2 cut(s) | 249, 907 |
| Alw26I | GTCTC | 2 cut(s) | 835, 1808 |
| Ama87I | CYCGRG | 3 cut(s) | 350, 752, 900 |
| Aor13HI | TCCGGA | 1 cut(s) | 1040 |
| AoxI | GGCC | 1 cut(s) | 1260 |
| AspS9I | GGNCC | 3 cut(s) | 1260, 1279, 1536 |
| AsuC2I | CCSGG | 1 cut(s) | 1147 |
| AsuHPI | GGTGA | 3 cut(s) | 229, 378, 1565 |
| AsuNHI | GCTAGC | 1 cut(s) | 107 |
| AvaI | CYCGRG | 3 cut(s) | 350, 752, 900 |
| AvaII | GGWCC | 2 cut(s) | 1279, 1536 |
| BbsI | GAAGAC | 1 cut(s) | 598 |
| Bbv12I | GWGCWC | 2 cut(s) | 249, 907 |
| BccI | CCATC | 4 cut(s) | 505, 544, 627, 897 |
| BclI | TGATCA | 1 cut(s) | 1474 |
| BcnI | CCSGG | 1 cut(s) | 1147 |
| BcoDI | GTCTC | 2 cut(s) | 835, 1808 |
| Bme1390I | CCNGG | 1 cut(s) | 1147 |
| Bme18I | GGWCC | 2 cut(s) | 1279, 1536 |
| BmeT110I | CYCGRG | 3 cut(s) | 350, 752, 900 |
| BmgT120I | GGNCC | 3 cut(s) | 1260, 1279, 1536 |
| BmiI | GGNNCC | 3 cut(s) | 631, 678, 1281 |
| BmrFI | CCNGG | 1 cut(s) | 1147 |
| BmsI | GCATC | 4 cut(s) | 120, 392, 696, 2021 |
| BmtI | GCTAGC | 1 cut(s) | 111 |
| BpiI | GAAGAC | 1 cut(s) | 598 |
| BpuEI | CTTGAG | 5 cut(s) | 565, 1106, 1324, 1513, 1783 |
| BpuMI | CCSGG | 1 cut(s) | 1147 |
| BsaJI | CCNNGG | 3 cut(s) | 102, 351, 1146 |
| BsaWI | WCCGGW | 1 cut(s) | 1040 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1152, 1545 |
| Bse1I | ACTGG | 1 cut(s) | 1064 |
| Bse3DI | GCAATG | 2 cut(s) | 1472, 1477 |
| BseAI | TCCGGA | 1 cut(s) | 1040 |
| BseDI | CCNNGG | 3 cut(s) | 102, 351, 1146 |
| BseGI | GGATG | 4 cut(s) | 111, 619, 687, 1861 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1152, 1545 |
| BseMI | GCAATG | 2 cut(s) | 1472, 1477 |
| BseMII | CTCAG | 2 cut(s) | 846, 993 |
| BseNI | ACTGG | 1 cut(s) | 1064 |
| BshFI | GGCC | 1 cut(s) | 1262 |
| BsiHKAI | GWGCWC | 2 cut(s) | 249, 907 |
| BsiHKCI | CYCGRG | 3 cut(s) | 350, 752, 900 |
| BsiSI | CCGG | 2 cut(s) | 1041, 1146 |
| BslFI | GGGAC | 2 cut(s) | 524, 563 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1152, 1545 |
| BsmAI | GTCTC | 2 cut(s) | 835, 1808 |
| BsmBI | CGTCTC | 1 cut(s) | 835 |
| BsmFI | GGGAC | 2 cut(s) | 524, 563 |
| BsmI | GAATGC | 1 cut(s) | 1214 |
| BsnI | GGCC | 1 cut(s) | 1262 |
| BsoBI | CYCGRG | 3 cut(s) | 350, 752, 900 |
| Bsp1286I | GDGCHC | 2 cut(s) | 249, 907 |
| Bsp13I | TCCGGA | 1 cut(s) | 1040 |
| Bsp143I | GATC | 2 cut(s) | 1474, 1731 |
| BspANI | GGCC | 1 cut(s) | 1262 |
| BspCNI | CTCAG | 2 cut(s) | 845, 992 |
| BspEI | TCCGGA | 1 cut(s) | 1040 |
| BspLI | GGNNCC | 3 cut(s) | 631, 678, 1281 |
| BspOI | GCTAGC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 2 cut(s) | 1472, 1477 |
| BsrI | ACTGG | 1 cut(s) | 1064 |
| BssECI | CCNNGG | 3 cut(s) | 102, 351, 1146 |
| BssMI | GATC | 2 cut(s) | 1474, 1731 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| BstC8I | GCNNGC | 1 cut(s) | 109 |
| BstDEI | CTNAG | 7 cut(s) | 832, 932, 979, 1007, 1192, 1204, 1703 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1543 |
| BstF5I | GGATG | 4 cut(s) | 111, 619, 687, 1861 |
| BstKTI | GATC | 2 cut(s) | 1477, 1734 |
| BstMAI | GTCTC | 2 cut(s) | 835, 1808 |
| BstMBI | GATC | 2 cut(s) | 1474, 1731 |
| BstNSI | RCATGY | 6 cut(s) | 87, 859, 911, 930, 1057, 1838 |
| BstSCI | CCNGG | 1 cut(s) | 1145 |
| BstV2I | GAAGAC | 1 cut(s) | 598 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BsuRI | GGCC | 1 cut(s) | 1262 |
| BtsCI | GGATG | 4 cut(s) | 111, 619, 687, 1861 |
| BtsIMutI | CAGTG | 1 cut(s) | 1071 |
| Cac8I | GCNNGC | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 3 cut(s) | 1260, 1279, 1536 |
| Csp6I | GTAC | 2 cut(s) | 1143, 1838 |
| CviQI | GTAC | 2 cut(s) | 1143, 1838 |
| DdeI | CTNAG | 7 cut(s) | 832, 932, 979, 1007, 1192, 1204, 1703 |
| DpnI | GATC | 2 cut(s) | 1476, 1733 |
| DpnII | GATC | 2 cut(s) | 1474, 1731 |
| DraI | TTTAAA | 3 cut(s) | 292, 1227, 1962 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco32I | GATATC | 1 cut(s) | 645 |
| Eco47I | GGWCC | 2 cut(s) | 1279, 1536 |
| Eco88I | CYCGRG | 3 cut(s) | 350, 752, 900 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1543 |
| EcoRI | GAATTC | 3 cut(s) | 1196, 1265, 1484 |
| EcoRV | GATATC | 1 cut(s) | 645 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| EcoT22I | ATGCAT | 1 cut(s) | 689 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| Esp3I | CGTCTC | 1 cut(s) | 835 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 723, 755 |
| FaqI | GGGAC | 2 cut(s) | 524, 563 |
| FauNDI | CATATG | 2 cut(s) | 639, 1075 |
| FbaI | TGATCA | 1 cut(s) | 1474 |
| FokI | GGATG | 4 cut(s) | 98, 606, 674, 1848 |
| HaeIII | GGCC | 1 cut(s) | 1262 |
| HapII | CCGG | 2 cut(s) | 1041, 1146 |
| HincII | GTYRAC | 1 cut(s) | 1572 |
| HindII | GTYRAC | 1 cut(s) | 1572 |
| HinfI | GANTC | 8 cut(s) | 25, 206, 313, 439, 475, 589, 1907, 2081 |
| HpaI | GTTAAC | 1 cut(s) | 1572 |
| HpaII | CCGG | 2 cut(s) | 1041, 1146 |
| HphI | GGTGA | 3 cut(s) | 229, 378, 1565 |
| Hpy166II | GTNNAC | 2 cut(s) | 1572, 1871 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 982 |
| Hpy188III | TCNNGA | 5 cut(s) | 1041, 1123, 1492, 1517, 1679 |
| Hpy8I | GTNNAC | 2 cut(s) | 1572, 1871 |
| HpyAV | CCTTC | 6 cut(s) | 827, 1233, 1293, 1297, 1453, 1709 |
| HpyCH4IV | ACGT | 2 cut(s) | 305, 1789 |
| HpyF3I | CTNAG | 7 cut(s) | 832, 932, 979, 1007, 1192, 1204, 1703 |
| HpySE526I | ACGT | 2 cut(s) | 305, 1789 |
| Kpn2I | TCCGGA | 1 cut(s) | 1040 |
| Ksp22I | TGATCA | 1 cut(s) | 1474 |
| KspAI | GTTAAC | 1 cut(s) | 1572 |
| Kzo9I | GATC | 2 cut(s) | 1474, 1731 |
| LmnI | GCTCC | 3 cut(s) | 635, 672, 682 |
| LpnPI | CCDG | 4 cut(s) | 819, 1054, 1077, 1159 |
| LweI | GCATC | 4 cut(s) | 120, 392, 696, 2021 |
| MaeII | ACGT | 2 cut(s) | 305, 1789 |
| MaeIII | GTNAC | 6 cut(s) | 79, 215, 922, 1066, 1660, 2027 |
| MalI | GATC | 2 cut(s) | 1476, 1733 |
| MboI | GATC | 2 cut(s) | 1474, 1731 |
| MboII | GAAGA | 5 cut(s) | 423, 492, 531, 590, 598 |
| MfeI | CAATTG | 1 cut(s) | 52 |
| MhlI | GDGCHC | 2 cut(s) | 249, 907 |
| MlyI | GAGTC | 2 cut(s) | 322, 2075 |
| MmeI | TCCRAC | 3 cut(s) | 398, 845, 1904 |
| MnlI | CCTC | 9 cut(s) | 346, 350, 633, 761, 954, 1549, 1921, 2042, 2072 |
| Mph1103I | ATGCAT | 1 cut(s) | 689 |
| MroI | TCCGGA | 1 cut(s) | 1040 |
| MslI | CAYNNNNRTG | 3 cut(s) | 242, 1918, 1987 |
| MspI | CCGG | 2 cut(s) | 1041, 1146 |
| MspR9I | CCNGG | 1 cut(s) | 1147 |
| MunI | CAATTG | 1 cut(s) | 52 |
| Mva1269I | GAATGC | 1 cut(s) | 1214 |
| NciI | CCSGG | 1 cut(s) | 1147 |
| NdeI | CATATG | 2 cut(s) | 639, 1075 |
| NdeII | GATC | 2 cut(s) | 1474, 1731 |
| NheI | GCTAGC | 1 cut(s) | 107 |
| NlaIV | GGNNCC | 3 cut(s) | 631, 678, 1281 |
| NmuCI | GTSAC | 2 cut(s) | 1066, 1660 |
| NsiI | ATGCAT | 1 cut(s) | 689 |
| NspI | RCATGY | 6 cut(s) | 87, 859, 911, 930, 1057, 1838 |
| OliI | CACNNNNGTG | 1 cut(s) | 242 |
| PaeR7I | CTCGAG | 2 cut(s) | 752, 900 |
| PciI | ACATGT | 3 cut(s) | 83, 855, 907 |
| PctI | GAATGC | 1 cut(s) | 1214 |
| PfeI | GAWTC | 6 cut(s) | 25, 206, 439, 475, 589, 1907 |
| PleI | GAGTC | 2 cut(s) | 321, 2075 |
| PpsI | GAGTC | 2 cut(s) | 321, 2075 |
| PscI | ACATGT | 3 cut(s) | 83, 855, 907 |
| PsiI | TTATAA | 1 cut(s) | 195 |
| Psp1406I | AACGTT | 1 cut(s) | 1789 |
| PspN4I | GGNNCC | 3 cut(s) | 631, 678, 1281 |
| PspPI | GGNCC | 3 cut(s) | 1260, 1279, 1536 |
| PspXI | VCTCGAGB | 2 cut(s) | 752, 900 |
| RsaI | GTAC | 2 cut(s) | 1144, 1839 |
| RsaNI | GTAC | 2 cut(s) | 1143, 1838 |
| RseI | CAYNNNNRTG | 3 cut(s) | 242, 1918, 1987 |
| Sau3AI | GATC | 2 cut(s) | 1474, 1731 |
| Sau96I | GGNCC | 3 cut(s) | 1260, 1279, 1536 |
| SchI | GAGTC | 2 cut(s) | 322, 2075 |
| ScrFI | CCNGG | 1 cut(s) | 1147 |
| SduI | GDGCHC | 2 cut(s) | 249, 907 |
| SfaNI | GCATC | 4 cut(s) | 120, 392, 696, 2021 |
| Sfr274I | CTCGAG | 2 cut(s) | 752, 900 |
| SinI | GGWCC | 2 cut(s) | 1279, 1536 |
| SlaI | CTCGAG | 2 cut(s) | 752, 900 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 242, 1918, 1987 |
| SmlI | CTYRAG | 7 cut(s) | 580, 752, 900, 1121, 1303, 1492, 1798 |
| SmoI | CTYRAG | 7 cut(s) | 580, 752, 900, 1121, 1303, 1492, 1798 |
| StyD4I | CCNGG | 1 cut(s) | 1145 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaiI | ACGT | 2 cut(s) | 308, 1792 |
| TaqI | TCGA | 2 cut(s) | 753, 901 |
| TfiI | GAWTC | 6 cut(s) | 25, 206, 439, 475, 589, 1907 |
| TscAI | CASTG | 1 cut(s) | 1071 |
| TseFI | GTSAC | 2 cut(s) | 1066, 1660 |
| Tsp45I | GTSAC | 2 cut(s) | 1066, 1660 |
| TspRI | CASTG | 1 cut(s) | 1071 |
| VpaK11BI | GGWCC | 2 cut(s) | 1279, 1536 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1543 |
| XceI | RCATGY | 6 cut(s) | 87, 859, 911, 930, 1057, 1838 |
| XhoI | CTCGAG | 2 cut(s) | 752, 900 |
| Zsp2I | ATGCAT | 1 cut(s) | 689 |