pycom12659g00200

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012659
Physical Location & Seq
Forward (+)
315487 .. 317326
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12659g00200.12

Sequence Viewer

Length: 1125 bp
ATGAAAGGGGGATTGTTTTTGACGAATTTAAAACTTAAAACAAAAACTTTGGGTGAAAGGCTAGTTAGAGGGTCCTTCTCCACACATGATATATTTAATTTATCTTTCTCAAGTTCCCTATATGAAACGCATGATAAAGATACATATCAAAAGTCATTAAGTTTTGTGAAAATCATAAGCATTGACAAGGCATTCATCACTATGAAACTGAATAACTCTTACGTGAAACCCCCTTATACTCTAGCATCAAATTCATGCATGCAAATTAAGTGTCGACCCCCAACCCACATACATAAACAAATAAAACATATAATCATAGCTTCAAATTCACCTCTAACTAAAAAGAAGTTAGTTCCACATAATACACCTAGAAACACTCCAGTGGCTCCTCCTTCCTTCCTTGCTGCCAACAATGGGGATTTGCGTGAATTTAGGCTCTTGAGGTGTGGTGGATGTGTTGTGGCATCAAGTATTTATAGGGTGAAGGGGAGGCACGAATTTGGGCTGAAAAGGAGAGAAATTATGACTCCAAATCACCAAAGAACAAGGATACTTTCAATTAGATTCCAAGGAGGACAAGGAATGGTCCTTGTGGCTGATTTTAGAACTTCTGGAAGGGTTATATGTGGCATAAGCTTAATTCACGAAAATAGGGAGTCATCTTTGAAGTTGGAATTAAGGGTTTGGATAAGACAAGGAAATTTGGATAACGTTCCTTATTTCTTGCTCTTTCCTTATCTTCTTTCATCTCTTGACTTCAATTTCGTCCATCCACATTGCTCCATAGTTAAGCTATCCAATCCATGCCCAAAACTGCTCCAAATAGCCTCAAAATGCACTTTCTTGCTCCTTTTGCCATTAGGACCTAAAAACATACGAAAATATAGCATAAATATGGTCCTATCAAATTCCCCACACTTAGCTTTTGCTAACCTTCCAACATGTGCCTCAGGGATTTCCAATGAACATCACACGTTAAAGAATGCCACATACATAGATTTTAGTTATCCCTACCCTCGAAGAATCCCCCAATTCCTCACTGGATATACTCTCTATTTTCACACAGATTTTCTGACTACACTCCCTACACTAGGTATATGTGAGAAGATTGATGTAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

375

Amino Acids

42.44

Weight (kDa)

9.89

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 274
AclI AACGTT 1 cut(s) 711
AcsI RAATTY 7 cut(s) 25, 250, 325, 428, 497, 700, 907
AfiI CCNNNNNNNGG 2 cut(s) 414, 1091
AflIII ACRYGT 3 cut(s) 941, 972, 1119
AgsI TTSAA 4 cut(s) 324, 558, 667, 760
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 4 cut(s) 320, 636, 793, 923
AluI AGCT 4 cut(s) 320, 636, 793, 923
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 7 cut(s) 25, 250, 325, 428, 497, 700, 907
ArsI GACNNNNNNTTYG 4 cut(s) 256, 288, 746, 778
AspS9I GGNCC 4 cut(s) 72, 586, 863, 898
AsuHPI GGTGA 4 cut(s) 65, 321, 493, 527
AvaII GGWCC 4 cut(s) 72, 586, 863, 898
AxyI CCTNAGG 1 cut(s) 949
BbvI GCAGC 1 cut(s) 391
BccI CCATC 1 cut(s) 777
BciVI GTATCC 1 cut(s) 543
BfaI CTAG 4 cut(s) 62, 242, 369, 1091
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme18I GGWCC 4 cut(s) 72, 586, 863, 898
BmgT120I GGNCC 4 cut(s) 72, 586, 863, 898
BmiI GGNNCC 2 cut(s) 73, 387
BmsI GCATC 2 cut(s) 254, 473
BpmI CTGGAG 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 94, 460
BsaAI YACGTR 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 568
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 1091
Bse1I ACTGG 2 cut(s) 380, 1045
Bse21I CCTNAGG 1 cut(s) 949
Bse3DI GCAATG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 2 cut(s) 458, 769
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 414, 1091
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 2 cut(s) 380, 1045
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 391
BslI CCNNNNNNNGG 2 cut(s) 414, 1091
BsmI GAATGC 2 cut(s) 191, 988
BspCNI CTCAG 1 cut(s) 962
BspLI GGNNCC 2 cut(s) 73, 387
BsrDI GCAATG 1 cut(s) 775
BsrI ACTGG 2 cut(s) 380, 1045
BssECI CCNNGG 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 919, 949
BstENI CCTNNNNNAGG 1 cut(s) 1089
BstF5I GGATG 2 cut(s) 458, 769
BstMWI GCNNNNNNNGC 1 cut(s) 853
BstNSI RCATGY 3 cut(s) 262, 945, 1123
BstV1I GCAGC 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 949
BsuI GTATCC 1 cut(s) 543
BtsCI GGATG 2 cut(s) 458, 769
BtsIMutI CAGTG 2 cut(s) 387, 1038
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 4 cut(s) 72, 586, 863, 898
CviAII CATG 7 cut(s) 86, 131, 255, 259, 804, 942, 1120
DdeI CTNAG 2 cut(s) 919, 949
DraI TTTAAA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 568
Eco47I GGWCC 4 cut(s) 72, 586, 863, 898
Eco81I CCTNAGG 1 cut(s) 949
EcoNI CCTNNNNNAGG 1 cut(s) 1089
EcoO109I RGGNCCY 2 cut(s) 72, 863
EcoT14I CCWWGG 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 7 cut(s) 89, 134, 258, 262, 807, 945, 1123
FatI CATG 7 cut(s) 85, 130, 254, 258, 803, 941, 1119
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 465, 756
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 4 cut(s) 62, 242, 369, 1091
GluI GCNGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 363
Hin1II CATG 7 cut(s) 89, 134, 258, 262, 807, 945, 1123
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 4 cut(s) 526, 564, 656, 1023
HphI GGTGA 4 cut(s) 65, 321, 493, 527
Hpy166II GTNNAC 2 cut(s) 275, 1117
Hpy188I TCNGA 1 cut(s) 1074
Hpy188III TCNNGA 4 cut(s) 439, 612, 644, 752
Hpy8I GTNNAC 2 cut(s) 275, 1117
HpyAV CCTTC 6 cut(s) 85, 402, 406, 478, 609, 944
HpyCH4IV ACGT 3 cut(s) 222, 711, 974
HpyCH4V TGCA 3 cut(s) 258, 262, 837
HpyF10VI GCNNNNNNNGC 1 cut(s) 853
HpyF3I CTNAG 2 cut(s) 919, 949
HpySE526I ACGT 3 cut(s) 222, 711, 974
Hsp92II CATG 7 cut(s) 89, 134, 258, 262, 807, 945, 1123
LmnI GCTCC 4 cut(s) 391, 785, 822, 852
LpnPI CCDG 4 cut(s) 393, 597, 936, 1026
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 254, 473
MaeI CTAG 4 cut(s) 62, 242, 369, 1091
MaeII ACGT 3 cut(s) 222, 711, 974
MboII GAAGA 3 cut(s) 731, 1032, 1117
MlyI GAGTC 2 cut(s) 520, 665
MmeI TCCRAC 2 cut(s) 651, 962
Mph1103I ATGCAT 1 cut(s) 260
MseI TTAA 9 cut(s) 29, 36, 96, 158, 267, 638, 677, 789, 977
MslI CAYNNNNRTG 3 cut(s) 200, 380, 893
Mva1269I GAATGC 2 cut(s) 191, 988
MwoI GCNNNNNNNGC 1 cut(s) 853
NlaIII CATG 7 cut(s) 89, 134, 258, 262, 807, 945, 1123
NlaIV GGNNCC 2 cut(s) 73, 387
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 3 cut(s) 262, 945, 1123
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 1 cut(s) 262
PciI ACATGT 2 cut(s) 941, 1119
PctI GAATGC 2 cut(s) 191, 988
PfeI GAWTC 2 cut(s) 564, 1023
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 2 cut(s) 520, 664
PpsI GAGTC 2 cut(s) 520, 664
Ppu21I YACGTR 1 cut(s) 223
PpuMI RGGWCCY 2 cut(s) 72, 863
PscI ACATGT 2 cut(s) 941, 1119
Psp1406I AACGTT 1 cut(s) 711
Psp5II RGGWCCY 2 cut(s) 72, 863
PspN4I GGNNCC 2 cut(s) 73, 387
PspPI GGNCC 4 cut(s) 72, 586, 863, 898
PspPPI RGGWCCY 2 cut(s) 72, 863
RseI CAYNNNNRTG 3 cut(s) 200, 380, 893
SalI GTCGAC 1 cut(s) 273
SaqAI TTAA 9 cut(s) 29, 36, 96, 158, 267, 638, 677, 789, 977
SatI GCNGC 1 cut(s) 405
Sau96I GGNCC 4 cut(s) 72, 586, 863, 898
SchI GAGTC 2 cut(s) 520, 665
SfaNI GCATC 2 cut(s) 254, 473
SinI GGWCC 4 cut(s) 72, 586, 863, 898
SmiMI CAYNNNNRTG 3 cut(s) 200, 380, 893
SmlI CTYRAG 2 cut(s) 109, 439
SmoI CTYRAG 2 cut(s) 109, 439
SphI GCATGC 1 cut(s) 262
SspMI CTAG 4 cut(s) 62, 242, 369, 1091
StyI CCWWGG 1 cut(s) 568
TaiI ACGT 3 cut(s) 225, 714, 977
TaqI TCGA 2 cut(s) 274, 1018
TfiI GAWTC 2 cut(s) 564, 1023
Tru1I TTAA 9 cut(s) 29, 36, 96, 158, 267, 638, 677, 789, 977
Tru9I TTAA 9 cut(s) 29, 36, 96, 158, 267, 638, 677, 789, 977
TscAI CASTG 2 cut(s) 387, 1045
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 7 cut(s) 17, 138, 184, 218, 243, 735, 978
TspRI CASTG 2 cut(s) 387, 1045
VpaK11BI GGWCC 4 cut(s) 72, 586, 863, 898
XagI CCTNNNNNAGG 1 cut(s) 1089
XapI RAATTY 7 cut(s) 25, 250, 325, 428, 497, 700, 907
XceI RCATGY 3 cut(s) 262, 945, 1123
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 4 cut(s) 62, 242, 369, 1091
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.