pycom13g26180

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
22915456 .. 22916082
627 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26180.5

Sequence Viewer

Length: 408 bp
ATGAACTTAATTACACAACATGATTACAGAATACATAAATATCAAGAACAACATGAATGGAAATTCTTCAAGAACAGCGTGGCTGCGTGGTTTCTTCGGTGGCAACGGATGGTGAAGGGAAATAAGTTTTTGTTTCGGGAAGAAAGGCTAAATAAAGAGAAGAGAGAGAGCTCTGATATTTATATGCTAAATGGGGTTGTAGCTAATTGTAAGGTGATTCCAACCATTAATCCAAATCCAATTCCTTTCCCATTCTACTCCTGGTCTTCTAACATGCCACTAAACCTCTTTCCATGTTTGAATAAGGGTCAACCCCAAAAATGGCATGTTTTCACTTCTTTTACCTTCAAATCGATCCTAAAGTATATTTCAACTAAAAAACATCACAAAGAGACTAGAAAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

16.37

Weight (kDa)

10.05

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 4 cut(s) 70, 301, 349, 372
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 171, 203
AluI AGCT 2 cut(s) 171, 203
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 62
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 124, 226
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 353
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 354
BspDI ATCGAT 1 cut(s) 353
BspPI GGATC 1 cut(s) 349
BssMI GATC 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 354
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 2 cut(s) 277, 329
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 353
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 353
CviAII CATG 5 cut(s) 20, 53, 274, 294, 326
CviJI RGCY 4 cut(s) 83, 148, 171, 203
CviKI_1 RGCY 4 cut(s) 83, 148, 171, 203
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 5 cut(s) 23, 56, 277, 297, 329
FaiI YATR 9 cut(s) 21, 36, 54, 183, 185, 275, 295, 327, 366
FatI CATG 5 cut(s) 19, 52, 273, 293, 325
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 84
Hin1II CATG 5 cut(s) 23, 56, 277, 297, 329
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HinfI GANTC 1 cut(s) 217
HphI GGTGA 2 cut(s) 124, 226
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 44, 70, 137
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 109, 355
Hsp92II CATG 5 cut(s) 23, 56, 277, 297, 329
Kzo9I GATC 1 cut(s) 354
LpnPI CCDG 2 cut(s) 247, 274
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 396
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 5 cut(s) 58, 86, 152, 172, 258
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 4 cut(s) 9, 62, 205, 240
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 8, 228
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
NdeII GATC 1 cut(s) 354
NlaIII CATG 5 cut(s) 23, 56, 277, 297, 329
NspI RCATGY 2 cut(s) 277, 329
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 8, 228
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 173
SetI ASST 5 cut(s) 173, 205, 216, 288, 347
Sse9I AATT 4 cut(s) 9, 62, 205, 240
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 260
TaqI TCGA 1 cut(s) 353
TasI AATT 4 cut(s) 9, 62, 205, 240
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 8, 228
Tru9I TTAA 2 cut(s) 8, 228
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 17, 69
TspGWI ACGGA 1 cut(s) 121
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 1 cut(s) 62
XceI RCATGY 2 cut(s) 277, 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.