NUMOD3 motif (2 copies)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 569, 645, 1173, 1296 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 64 |
| AccI | GTMKAC | 2 cut(s) | 748, 1508 |
| AciI | CCGC | 2 cut(s) | 185, 974 |
| AclI | AACGTT | 2 cut(s) | 1719, 1772 |
| AcsI | RAATTY | 1 cut(s) | 1895 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AfaI | GTAC | 3 cut(s) | 542, 992, 1532 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 605, 606, 793, 937, 1165, 1379, 2090 |
| AflIII | ACRYGT | 2 cut(s) | 1503, 1984 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 256 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1676, 1708 |
| AleI | CACNNNNGTG | 2 cut(s) | 1143, 1266 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 612, 644, 1073, 1105 |
| AluBI | AGCT | 8 cut(s) | 116, 494, 588, 949, 1292, 1308, 1762, 1799 |
| AluI | AGCT | 8 cut(s) | 116, 494, 588, 949, 1292, 1308, 1762, 1799 |
| Alw21I | GWGCWC | 3 cut(s) | 590, 1091, 1657 |
| Alw26I | GTCTC | 6 cut(s) | 140, 264, 286, 1534, 1639, 2102 |
| Ama87I | CYCGRG | 1 cut(s) | 662 |
| AoxI | GGCC | 1 cut(s) | 1057 |
| ApeKI | GCWGC | 2 cut(s) | 113, 1413 |
| ApoI | RAATTY | 1 cut(s) | 1895 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 537, 569 |
| AseI | ATTAAT | 1 cut(s) | 638 |
| AspA2I | CCTAGG | 1 cut(s) | 1378 |
| AspS9I | GGNCC | 6 cut(s) | 628, 658, 674, 1058, 1274, 1558 |
| AsuC2I | CCSGG | 1 cut(s) | 1486 |
| AsuHPI | GGTGA | 7 cut(s) | 431, 776, 1089, 1157, 1280, 1474, 1743 |
| AsuII | TTCGAA | 1 cut(s) | 452 |
| AvaI | CYCGRG | 1 cut(s) | 662 |
| AvaII | GGWCC | 5 cut(s) | 628, 658, 674, 1274, 1558 |
| AvrII | CCTAGG | 1 cut(s) | 1378 |
| BaeGI | GKGCMC | 1 cut(s) | 670 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 386, 419 |
| BanII | GRGCYC | 2 cut(s) | 414, 590 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1292, 1324 |
| Bbv12I | GWGCWC | 3 cut(s) | 590, 1091, 1657 |
| BbvI | GCAGC | 2 cut(s) | 125, 1425 |
| BccI | CCATC | 4 cut(s) | 199, 247, 537, 1949 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 195, 229 |
| BciVI | GTATCC | 3 cut(s) | 165, 781, 867 |
| BcnI | CCSGG | 1 cut(s) | 1486 |
| BcoDI | GTCTC | 6 cut(s) | 140, 264, 286, 1534, 1639, 2102 |
| BfaI | CTAG | 4 cut(s) | 164, 1379, 1703, 2025 |
| BfuI | GTATCC | 3 cut(s) | 165, 781, 867 |
| BisI | GCNGC | 3 cut(s) | 114, 185, 1414 |
| BlnI | CCTAGG | 1 cut(s) | 1378 |
| BlsI | GCNGC | 3 cut(s) | 115, 186, 1415 |
| Bme1390I | CCNGG | 1 cut(s) | 1486 |
| Bme18I | GGWCC | 5 cut(s) | 628, 658, 674, 1274, 1558 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 256 |
| BmeT110I | CYCGRG | 1 cut(s) | 662 |
| BmgT120I | GGNCC | 6 cut(s) | 628, 658, 674, 1058, 1274, 1558 |
| BmiI | GGNNCC | 3 cut(s) | 183, 237, 1220 |
| BmrFI | CCNGG | 1 cut(s) | 1486 |
| BmrI | ACTGGG | 1 cut(s) | 1367 |
| BmsI | GCATC | 5 cut(s) | 532, 856, 979, 1351, 1792 |
| BmuI | ACTGGG | 1 cut(s) | 1367 |
| Bpu14I | TTCGAA | 1 cut(s) | 452 |
| BpuEI | CTTGAG | 2 cut(s) | 598, 644 |
| BpuMI | CCSGG | 1 cut(s) | 1486 |
| BsaAI | YACGTR | 2 cut(s) | 127, 429 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 799, 829, 1073, 1103 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 605, 606, 793, 937, 1165, 1379, 2090 |
| Bse1I | ACTGG | 2 cut(s) | 65, 1373 |
| BseGI | GGATG | 6 cut(s) | 523, 529, 847, 970, 1602, 1957 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 605, 606, 793, 937, 1165, 1379, 2090 |
| BseMII | CTCAG | 4 cut(s) | 314, 510, 971, 2027 |
| BseNI | ACTGG | 2 cut(s) | 65, 1373 |
| BseRI | GAGGAG | 2 cut(s) | 237, 1303 |
| BseSI | GKGCMC | 1 cut(s) | 670 |
| BseXI | GCAGC | 2 cut(s) | 125, 1425 |
| BshFI | GGCC | 1 cut(s) | 1059 |
| BsiHKAI | GWGCWC | 3 cut(s) | 590, 1091, 1657 |
| BsiHKCI | CYCGRG | 1 cut(s) | 662 |
| BsiSI | CCGG | 1 cut(s) | 1485 |
| BslFI | GGGAC | 3 cut(s) | 582, 1243, 2066 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 605, 606, 793, 937, 1165, 1379, 2090 |
| BsmAI | GTCTC | 6 cut(s) | 140, 264, 286, 1534, 1639, 2102 |
| BsmFI | GGGAC | 3 cut(s) | 582, 1243, 2066 |
| BsnI | GGCC | 1 cut(s) | 1059 |
| BsoBI | CYCGRG | 1 cut(s) | 662 |
| Bsp119I | TTCGAA | 1 cut(s) | 452 |
| Bsp1286I | GDGCHC | 5 cut(s) | 414, 590, 670, 1091, 1657 |
| Bsp143I | GATC | 2 cut(s) | 1748, 2122 |
| Bsp19I | CCATGG | 2 cut(s) | 774, 874 |
| BspACI | CCGC | 2 cut(s) | 185, 974 |
| BspANI | GGCC | 1 cut(s) | 1059 |
| BspCNI | CTCAG | 4 cut(s) | 315, 511, 972, 2026 |
| BspLI | GGNNCC | 3 cut(s) | 183, 237, 1220 |
| BspT104I | TTCGAA | 1 cut(s) | 452 |
| BsrI | ACTGG | 2 cut(s) | 65, 1373 |
| BssMI | GATC | 2 cut(s) | 1748, 2122 |
| BssNAI | GTATAC | 2 cut(s) | 749, 1509 |
| BssT1I | CCWWGG | 8 cut(s) | 140, 414, 765, 774, 851, 874, 1378, 1965 |
| Bst1107I | GTATAC | 2 cut(s) | 749, 1509 |
| Bst4CI | ACNGT | 5 cut(s) | 175, 1042, 1338, 1592, 1613 |
| Bst6I | CTCTTC | 1 cut(s) | 1000 |
| BstBAI | YACGTR | 2 cut(s) | 127, 429 |
| BstBI | TTCGAA | 1 cut(s) | 452 |
| BstC8I | GCNNGC | 1 cut(s) | 715 |
| BstDEI | CTNAG | 6 cut(s) | 323, 519, 980, 1859, 1940, 2013 |
| BstDSI | CCRYGG | 2 cut(s) | 774, 874 |
| BstF5I | GGATG | 6 cut(s) | 523, 529, 847, 970, 1602, 1957 |
| BstKTI | GATC | 2 cut(s) | 1751, 2125 |
| BstMAI | GTCTC | 6 cut(s) | 140, 264, 286, 1534, 1639, 2102 |
| BstMBI | GATC | 2 cut(s) | 1748, 2122 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1796 |
| BstNSI | RCATGY | 4 cut(s) | 717, 816, 1711, 1988 |
| BstSCI | CCNGG | 1 cut(s) | 1484 |
| BstSLI | GKGCMC | 1 cut(s) | 670 |
| BstSNI | TACGTA | 1 cut(s) | 127 |
| BstV1I | GCAGC | 2 cut(s) | 125, 1425 |
| BstZ17I | GTATAC | 2 cut(s) | 749, 1509 |
| BsuI | GTATCC | 3 cut(s) | 165, 781, 867 |
| BsuRI | GGCC | 1 cut(s) | 1059 |
| BtgI | CCRYGG | 2 cut(s) | 774, 874 |
| BtsCI | GGATG | 6 cut(s) | 523, 529, 847, 970, 1602, 1957 |
| BtsIMutI | CAGTG | 4 cut(s) | 58, 171, 977, 1609 |
| Cac8I | GCNNGC | 1 cut(s) | 715 |
| Cfr13I | GGNCC | 6 cut(s) | 628, 658, 674, 1058, 1274, 1558 |
| CseI | GACGC | 1 cut(s) | 1405 |
| Csp6I | GTAC | 3 cut(s) | 541, 991, 1531 |
| CviQI | GTAC | 3 cut(s) | 541, 991, 1531 |
| DdeI | CTNAG | 6 cut(s) | 323, 519, 980, 1859, 1940, 2013 |
| DpnI | GATC | 2 cut(s) | 1750, 2124 |
| DpnII | GATC | 2 cut(s) | 1748, 2122 |
| DraI | TTTAAA | 4 cut(s) | 348, 1726, 1839, 1852 |
| DriI | GACNNNNNGTC | 1 cut(s) | 256 |
| Eam1104I | CTCTTC | 1 cut(s) | 1000 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 256 |
| EarI | CTCTTC | 1 cut(s) | 1000 |
| EciI | GGCGGA | 1 cut(s) | 963 |
| Ecl136II | GAGCTC | 1 cut(s) | 588 |
| Eco105I | TACGTA | 1 cut(s) | 127 |
| Eco130I | CCWWGG | 8 cut(s) | 140, 414, 765, 774, 851, 874, 1378, 1965 |
| Eco24I | GRGCYC | 2 cut(s) | 414, 590 |
| Eco32I | GATATC | 1 cut(s) | 1567 |
| Eco47I | GGWCC | 5 cut(s) | 628, 658, 674, 1274, 1558 |
| Eco53kI | GAGCTC | 1 cut(s) | 588 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| Eco88I | CYCGRG | 1 cut(s) | 662 |
| EcoICRI | GAGCTC | 1 cut(s) | 588 |
| EcoO109I | RGGNCCY | 2 cut(s) | 628, 658 |
| EcoRV | GATATC | 1 cut(s) | 1567 |
| EcoT14I | CCWWGG | 8 cut(s) | 140, 414, 765, 774, 851, 874, 1378, 1965 |
| EcoT22I | ATGCAT | 3 cut(s) | 218, 719, 972 |
| EcoT38I | GRGCYC | 2 cut(s) | 414, 590 |
| ErhI | CCWWGG | 8 cut(s) | 140, 414, 765, 774, 851, 874, 1378, 1965 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1958, 1990 |
| FaqI | GGGAC | 3 cut(s) | 582, 1243, 2066 |
| FauNDI | CATATG | 1 cut(s) | 1519 |
| FblI | GTMKAC | 2 cut(s) | 748, 1508 |
| Fnu4HI | GCNGC | 3 cut(s) | 114, 185, 1414 |
| FokI | GGATG | 6 cut(s) | 510, 516, 834, 957, 1609, 1964 |
| FriOI | GRGCYC | 2 cut(s) | 414, 590 |
| Fsp4HI | GCNGC | 3 cut(s) | 114, 185, 1414 |
| FspBI | CTAG | 4 cut(s) | 164, 1379, 1703, 2025 |
| GluI | GCNGC | 3 cut(s) | 114, 185, 1414 |
| HaeIII | GGCC | 1 cut(s) | 1059 |
| HapII | CCGG | 1 cut(s) | 1485 |
| HgaI | GACGC | 1 cut(s) | 1405 |
| HinfI | GANTC | 9 cut(s) | 257, 368, 434, 470, 484, 789, 1875, 2009, 2028 |
| HpaII | CCGG | 1 cut(s) | 1485 |
| HphI | GGTGA | 7 cut(s) | 431, 776, 1089, 1157, 1280, 1474, 1743 |
| Hpy166II | GTNNAC | 4 cut(s) | 749, 928, 1251, 1509 |
| Hpy188I | TCNGA | 6 cut(s) | 264, 373, 520, 896, 1048, 1421 |
| Hpy188III | TCNNGA | 3 cut(s) | 18, 1358, 1539 |
| Hpy8I | GTNNAC | 4 cut(s) | 749, 928, 1251, 1509 |
| HpyAV | CCTTC | 5 cut(s) | 168, 271, 362, 904, 1265 |
| HpyCH4III | ACNGT | 5 cut(s) | 175, 1042, 1338, 1592, 1613 |
| HpyCH4IV | ACGT | 6 cut(s) | 126, 428, 924, 1503, 1719, 1772 |
| HpyCH4V | TGCA | 8 cut(s) | 113, 216, 717, 970, 1163, 1286, 1413, 1997 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1796 |
| HpyF3I | CTNAG | 6 cut(s) | 323, 519, 980, 1859, 1940, 2013 |
| HpySE526I | ACGT | 6 cut(s) | 126, 428, 924, 1503, 1719, 1772 |
| Kzo9I | GATC | 2 cut(s) | 1748, 2122 |
| LmnI | GCTCC | 5 cut(s) | 36, 181, 593, 844, 1094 |
| LpnPI | CCDG | 5 cut(s) | 3, 46, 970, 1386, 1498 |
| Lsp1109I | GCAGC | 2 cut(s) | 125, 1425 |
| LweI | GCATC | 5 cut(s) | 532, 856, 979, 1351, 1792 |
| MaeI | CTAG | 4 cut(s) | 164, 1379, 1703, 2025 |
| MaeII | ACGT | 6 cut(s) | 126, 428, 924, 1503, 1719, 1772 |
| MaeIII | GTNAC | 6 cut(s) | 424, 553, 1022, 1095, 1729, 1987 |
| MalI | GATC | 2 cut(s) | 1750, 2124 |
| MboI | GATC | 2 cut(s) | 1748, 2122 |
| MboII | GAAGA | 8 cut(s) | 293, 441, 826, 987, 1224, 1312, 1346, 1455 |
| MfeI | CAATTG | 1 cut(s) | 1202 |
| MhlI | GDGCHC | 5 cut(s) | 414, 590, 670, 1091, 1657 |
| MlyI | GAGTC | 3 cut(s) | 266, 798, 1869 |
| MmeI | TCCRAC | 3 cut(s) | 320, 556, 785 |
| Mph1103I | ATGCAT | 3 cut(s) | 218, 719, 972 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1143, 1266 |
| MspI | CCGG | 1 cut(s) | 1485 |
| MspR9I | CCNGG | 1 cut(s) | 1486 |
| MunI | CAATTG | 1 cut(s) | 1202 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1796 |
| NciI | CCSGG | 1 cut(s) | 1486 |
| NcoI | CCATGG | 2 cut(s) | 774, 874 |
| NdeI | CATATG | 1 cut(s) | 1519 |
| NdeII | GATC | 2 cut(s) | 1748, 2122 |
| NlaIV | GGNNCC | 3 cut(s) | 183, 237, 1220 |
| NmuCI | GTSAC | 3 cut(s) | 424, 553, 1095 |
| NsiI | ATGCAT | 3 cut(s) | 218, 719, 972 |
| NspI | RCATGY | 4 cut(s) | 717, 816, 1711, 1988 |
| NspV | TTCGAA | 1 cut(s) | 452 |
| OliI | CACNNNNGTG | 2 cut(s) | 1143, 1266 |
| PaeI | GCATGC | 1 cut(s) | 717 |
| PciI | ACATGT | 1 cut(s) | 1984 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 398 |
| PfeI | GAWTC | 6 cut(s) | 368, 434, 470, 484, 2009, 2028 |
| PflFI | GACNNNGTC | 1 cut(s) | 1255 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 64 |
| PkrI | GCNGC | 3 cut(s) | 115, 186, 1415 |
| PleI | GAGTC | 3 cut(s) | 265, 797, 1869 |
| PpsI | GAGTC | 3 cut(s) | 265, 797, 1869 |
| Ppu21I | YACGTR | 2 cut(s) | 127, 429 |
| PpuMI | RGGWCCY | 2 cut(s) | 628, 658 |
| PscI | ACATGT | 1 cut(s) | 1984 |
| PshBI | ATTAAT | 1 cut(s) | 638 |
| PsiI | TTATAA | 4 cut(s) | 569, 645, 1173, 1296 |
| Psp124BI | GAGCTC | 1 cut(s) | 590 |
| Psp1406I | AACGTT | 2 cut(s) | 1719, 1772 |
| Psp5II | RGGWCCY | 2 cut(s) | 628, 658 |
| PspN4I | GGNNCC | 3 cut(s) | 183, 237, 1220 |
| PspPI | GGNCC | 6 cut(s) | 628, 658, 674, 1058, 1274, 1558 |
| PspPPI | RGGWCCY | 2 cut(s) | 628, 658 |
| PsyI | GACNNNGTC | 1 cut(s) | 1255 |
| RsaI | GTAC | 3 cut(s) | 542, 992, 1532 |
| RsaNI | GTAC | 3 cut(s) | 541, 991, 1531 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1143, 1266 |
| SacI | GAGCTC | 1 cut(s) | 590 |
| SatI | GCNGC | 3 cut(s) | 114, 185, 1414 |
| Sau3AI | GATC | 2 cut(s) | 1748, 2122 |
| Sau96I | GGNCC | 6 cut(s) | 628, 658, 674, 1058, 1274, 1558 |
| SchI | GAGTC | 3 cut(s) | 266, 798, 1869 |
| ScrFI | CCNGG | 1 cut(s) | 1486 |
| SduI | GDGCHC | 5 cut(s) | 414, 590, 670, 1091, 1657 |
| SfaNI | GCATC | 5 cut(s) | 532, 856, 979, 1351, 1792 |
| SfuI | TTCGAA | 1 cut(s) | 452 |
| SinI | GGWCC | 5 cut(s) | 628, 658, 674, 1274, 1558 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1143, 1266 |
| SmlI | CTYRAG | 2 cut(s) | 613, 623 |
| SmoI | CTYRAG | 2 cut(s) | 613, 623 |
| SnaBI | TACGTA | 1 cut(s) | 127 |
| SphI | GCATGC | 1 cut(s) | 717 |
| SsiI | CCGC | 2 cut(s) | 185, 974 |
| SspI | AATATT | 1 cut(s) | 457 |
| SspMI | CTAG | 4 cut(s) | 164, 1379, 1703, 2025 |
| SstI | GAGCTC | 1 cut(s) | 590 |
| StyD4I | CCNGG | 1 cut(s) | 1484 |
| StyI | CCWWGG | 8 cut(s) | 140, 414, 765, 774, 851, 874, 1378, 1965 |
| TaaI | ACNGT | 5 cut(s) | 175, 1042, 1338, 1592, 1613 |
| TaiI | ACGT | 6 cut(s) | 129, 431, 927, 1506, 1722, 1775 |
| TaqI | TCGA | 5 cut(s) | 205, 452, 1340, 1538, 1563 |
| TatI | WGTACW | 1 cut(s) | 1530 |
| TauI | GCSGC | 1 cut(s) | 187 |
| TfiI | GAWTC | 6 cut(s) | 368, 434, 470, 484, 2009, 2028 |
| TscAI | CASTG | 4 cut(s) | 65, 178, 984, 1616 |
| TseFI | GTSAC | 3 cut(s) | 424, 553, 1095 |
| TseI | GCWGC | 2 cut(s) | 113, 1413 |
| Tsp45I | GTSAC | 3 cut(s) | 424, 553, 1095 |
| TspGWI | ACGGA | 2 cut(s) | 316, 901 |
| TspRI | CASTG | 4 cut(s) | 65, 178, 984, 1616 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1255 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 64 |
| VpaK11BI | GGWCC | 5 cut(s) | 628, 658, 674, 1274, 1558 |
| VspI | ATTAAT | 1 cut(s) | 638 |
| XapI | RAATTY | 1 cut(s) | 1895 |
| XceI | RCATGY | 4 cut(s) | 717, 816, 1711, 1988 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 772 |
| XmaJI | CCTAGG | 1 cut(s) | 1378 |
| XmiI | GTMKAC | 2 cut(s) | 748, 1508 |
| XspI | CTAG | 4 cut(s) | 164, 1379, 1703, 2025 |
| Zsp2I | ATGCAT | 3 cut(s) | 218, 719, 972 |