pycom13g26190

IQ-DOMAIN 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000608
Physical Location & Seq
Forward (+)
22916166 .. 22917217
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26190.7

Sequence Viewer

Length: 750 bp
ATGATTACAAAATATGTAAATATCCAGAATAACATGAGTGAAATTAAAGTTCATAGAAGAAACCCCCTTGAAGCATTTCTGATGTTAAACTTCTCCAAGAACAGCTCGGCTGATTTTGTTTCTAGAAGAAAAGCTAAAGAAAGAGAAGAGAGAGAGAGAGAGAGAGCTCTGGACACCCTCAAGGGGGGGGGCTGCAAGATATTCCAAAGTGATCCCAGTAGCTTAGCCTTTATTTTGCACGTTTCTGCCTTATTTGGTACCTCCAAATCAGGCCAGATATCCCAATTCCTTTCCCATTCTATTCCTGGTCTTCTAACAAACCAAATTCATCTTGGATTCTTTATTTGGAAAGGTCAACCCCAAAAATGTACATGTAACTACATACTAACACAAAATAAGGTAAAATGCAACCAGTTTAGCTCAAAAACATCCCAAATAGATAGAAATAGATGGTATAAATGCATGAAATATATGAGTTACCATATGATTACCTTGAATTGTCCCTCAAAAGATTTGAAGGTTAGAGATCCATTGTTGTGCATTCACTTGCCTCTATGGCTAAGTGGCTTAACCCTAACTATGCCGTGCACACCCTTTGAGGGATCAACTATGATGCCTCAGGTCAAGGGACTACTTTCGCGGTCAATGGACTCATTCTCTATTGAGCACCTACATGCTTGTCTTGGTGTCAATCACACCAATGACTCGAGACTAGTCACTCTCTCTAAGAAAAGACATAGCACGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

250

Amino Acids

28.46

Weight (kDa)

9.71

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccII CGCG 1 cut(s) 640
AciI CCGC 1 cut(s) 640
AclWI GGATC 3 cut(s) 206, 521, 610
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 2 cut(s) 259, 370
AfiI CCNNNNNNNGG 3 cut(s) 183, 184, 599
AflIII ACRYGT 1 cut(s) 371
AgsI TTSAA 3 cut(s) 71, 496, 517
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 5 cut(s) 105, 134, 167, 222, 420
AluI AGCT 5 cut(s) 105, 134, 167, 222, 420
Alw21I GWGCWC 3 cut(s) 169, 590, 669
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 3 cut(s) 206, 521, 610
Ama87I CYCGRG 1 cut(s) 706
AoxI GGCC 1 cut(s) 271
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 75
Asp718I GGTACC 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 706
AxyI CCTNAGG 1 cut(s) 618
BaeGI GKGCMC 1 cut(s) 590
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 3 cut(s) 169, 590, 669
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 444
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 703
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 2 cut(s) 123, 713
BglI GCCNNNNNGGC 1 cut(s) 556
BisI GCNGC 1 cut(s) 193
BlpI GCTNAGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 603
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 302
Bpu1102I GCTNAGC 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 184, 599
Bse1I ACTGG 2 cut(s) 216, 412
Bse21I CCTNAGG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 3 cut(s) 183, 184, 599
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 2 cut(s) 216, 412
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 640
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 3 cut(s) 169, 590, 669
BsiHKCI CYCGRG 1 cut(s) 706
BslFI GGGAC 2 cut(s) 486, 642
BslI CCNNNNNNNGG 3 cut(s) 183, 184, 599
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 2 cut(s) 486, 642
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 706
Bsp1286I GDGCHC 3 cut(s) 169, 590, 669
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 3 cut(s) 211, 526, 602
Bsp1720I GCTNAGC 1 cut(s) 223
BspACI CCGC 1 cut(s) 640
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 631
BspFNI CGCG 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 3 cut(s) 206, 521, 610
BspT107I GGYRCC 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 368
BsrI ACTGG 2 cut(s) 216, 412
BssMI GATC 3 cut(s) 211, 526, 602
Bst2UI CCWGG 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 743
BstDEI CTNAG 4 cut(s) 223, 560, 618, 726
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 1 cut(s) 640
BstKTI GATC 3 cut(s) 214, 529, 605
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 3 cut(s) 211, 526, 602
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 375, 677
BstSCI CCNGG 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 640
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
Bsu36I CCTNAGG 1 cut(s) 618
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 258, 369
CviAII CATG 4 cut(s) 34, 372, 463, 674
CviQI GTAC 2 cut(s) 258, 369
DdeI CTNAG 4 cut(s) 223, 560, 618, 726
DpnI GATC 3 cut(s) 213, 528, 604
DpnII GATC 3 cut(s) 211, 526, 602
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 169
Eco32I GATATC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 706
EcoICRI GAGCTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 4 cut(s) 37, 375, 466, 677
FaqI GGGAC 2 cut(s) 486, 642
FatI CATG 4 cut(s) 33, 371, 462, 673
FauNDI CATATG 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 2 cut(s) 123, 713
GluI GCNGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 4 cut(s) 37, 375, 466, 677
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HinfI GANTC 3 cut(s) 336, 650, 704
Hpy166II GTNNAC 2 cut(s) 356, 588
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 4 cut(s) 25, 123, 170, 708
Hpy8I GTNNAC 2 cut(s) 356, 588
HpyAV CCTTC 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 6 cut(s) 195, 238, 408, 462, 540, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 4 cut(s) 223, 560, 618, 726
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 4 cut(s) 37, 375, 466, 677
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 3 cut(s) 211, 526, 602
LpnPI CCDG 9 cut(s) 38, 155, 229, 255, 287, 291, 318, 425, 605
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 603
MaeI CTAG 2 cut(s) 123, 713
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 374, 476, 715
MalI GATC 3 cut(s) 213, 528, 604
MboI GATC 3 cut(s) 211, 526, 602
MboII GAAGA 4 cut(s) 69, 138, 158, 302
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 3 cut(s) 169, 590, 669
MluCI AATT 4 cut(s) 42, 284, 324, 496
MlyI GAGTC 2 cut(s) 644, 698
MnlI CCTC 6 cut(s) 188, 271, 514, 561, 592, 627
Mph1103I ATGCAT 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 75
MseI TTAA 3 cut(s) 45, 86, 569
MslI CAYNNNNRTG 3 cut(s) 535, 672, 699
MspR9I CCNGG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 640
MwoI GCNNNNNNNGC 1 cut(s) 556
NdeI CATATG 1 cut(s) 483
NdeII GATC 3 cut(s) 211, 526, 602
NlaIII CATG 4 cut(s) 37, 375, 466, 677
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 2 cut(s) 375, 677
PaeR7I CTCGAG 1 cut(s) 706
PciI ACATGT 1 cut(s) 371
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 2 cut(s) 644, 698
PpsI GAGTC 2 cut(s) 644, 698
PscI ACATGT 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 2 cut(s) 259, 370
RsaNI GTAC 2 cut(s) 258, 369
RseI CAYNNNNRTG 3 cut(s) 535, 672, 699
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 45, 86, 569
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 3 cut(s) 211, 526, 602
SchI GAGTC 2 cut(s) 644, 698
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 3 cut(s) 169, 590, 669
SfaNI GCATC 1 cut(s) 603
Sfr274I CTCGAG 1 cut(s) 706
SlaI CTCGAG 1 cut(s) 706
SmiMI CAYNNNNRTG 3 cut(s) 535, 672, 699
SmlI CTYRAG 2 cut(s) 179, 706
SmoI CTYRAG 2 cut(s) 179, 706
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 4 cut(s) 42, 284, 324, 496
SsiI CCGC 1 cut(s) 640
SspMI CTAG 2 cut(s) 123, 713
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 304
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 707
TasI AATT 4 cut(s) 42, 284, 324, 496
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 3 cut(s) 45, 86, 569
Tru9I TTAA 3 cut(s) 45, 86, 569
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 3 cut(s) 41, 317, 479
VneI GTGCAC 1 cut(s) 586
XapI RAATTY 1 cut(s) 324
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 2 cut(s) 375, 677
XcmI CCANNNNNNNNNTGG 2 cut(s) 302, 329
XhoI CTCGAG 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 75
XspI CTAG 2 cut(s) 123, 713
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.