pycom13g28010

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
24035895 .. 24036790
896 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28010.6

Sequence Viewer

Length: 597 bp
ATGAATATCAAAACAAAACAAAAGAAACCAAAAACAAAACGAACAAATAAAACACAACCTAAACCTTCCAACAATCGTCTCAGGGATTTCCAATCCATCTTTACACTTAATAAGTATTTAAAACACATTTCGAATGTAGTAACATGCCTTAGAGAATTCCCTCAATTCCTTACTGGATGTACTCTCGTTTTTCACACAGATTTTCTGACTACACTCCCTACACTTAGGTATATAACAAGGAAAGCATTTTCTGGAATTATTAACATGTATATGAATGATCTCATGAATGGAATGCCACTACTTAGACGCGAGAACCAGGGACACCATACGCTCATACTAAAAGTTGAGGGTTGTAACAGGGCTAAGGGTAATGCAATAGAAAACTCAACTTTTGAACAAAGAGGGAGAACAAGCTCTTTTTTCTTTCTTTCTTCCTTTTCTTTTCTGTTTTTCTTTTTTTTCATATGTTTTTTTTTTTTTTTCACAATTTTTTTCTTTTCTTTTGACTTTCAAAACATACATATAAACGTAAGAACAAACTTTTACTCCCCCACACTCATTTTCTTGCATAATGTAACTCAAAAGGAATTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

23.57

Weight (kDa)

10.2

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 309
AcsI RAATTY 2 cut(s) 155, 587
AfaI GTAC 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 395, 512
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 155, 587
AsuII TTCGAA 1 cut(s) 131
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bse1I ACTGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 297
Bsp119I TTCGAA 1 cut(s) 131
Bsp143I GATC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 131
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 131
BstDEI CTNAG 5 cut(s) 80, 149, 224, 302, 363
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 147, 268
BstSCI CCNGG 1 cut(s) 315
BstUI CGCG 1 cut(s) 309
BtsCI GGATG 1 cut(s) 182
CciI TCATGA 1 cut(s) 282
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 180
CviAII CATG 3 cut(s) 144, 265, 283
CviJI RGCY 2 cut(s) 362, 414
CviKI_1 RGCY 2 cut(s) 362, 414
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 5 cut(s) 80, 149, 224, 302, 363
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraI TTTAAA 1 cut(s) 120
EcoRI GAATTC 2 cut(s) 155, 587
EcoRII CCWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 3 cut(s) 147, 268, 286
FaqI GGGAC 1 cut(s) 333
FatI CATG 3 cut(s) 143, 264, 282
FauNDI CATATG 1 cut(s) 464
FokI GGATG 1 cut(s) 189
HgaI GACGC 1 cut(s) 315
Hin1II CATG 3 cut(s) 147, 268, 286
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 252, 283
HpyAV CCTTC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 374, 568
HpyF3I CTNAG 5 cut(s) 80, 149, 224, 302, 363
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 3 cut(s) 147, 268, 286
Kzo9I GATC 1 cut(s) 277
LpnPI CCDG 6 cut(s) 67, 159, 237, 302, 329, 343
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 139, 353, 574
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 423
MluCI AATT 5 cut(s) 155, 164, 255, 486, 587
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 171, 340, 395
MseI TTAA 4 cut(s) 108, 119, 261, 595
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 309
NdeI CATATG 1 cut(s) 464
NdeII GATC 1 cut(s) 277
NlaIII CATG 3 cut(s) 147, 268, 286
NspI RCATGY 2 cut(s) 147, 268
NspV TTCGAA 1 cut(s) 131
PagI TCATGA 1 cut(s) 282
PciI ACATGT 1 cut(s) 264
PctI GAATGC 1 cut(s) 297
PscI ACATGT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 4 cut(s) 108, 119, 261, 595
Sau3AI GATC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 317
SetI ASST 5 cut(s) 61, 67, 230, 416, 531
SfuI TTCGAA 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 5 cut(s) 155, 164, 255, 486, 587
StyD4I CCNGG 1 cut(s) 315
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 131
TasI AATT 5 cut(s) 155, 164, 255, 486, 587
TatI WGTACW 1 cut(s) 179
Tru1I TTAA 4 cut(s) 108, 119, 261, 595
Tru9I TTAA 4 cut(s) 108, 119, 261, 595
TspDTI ATGAA 5 cut(s) 17, 287, 299, 451, 580
XapI RAATTY 2 cut(s) 155, 587
XceI RCATGY 2 cut(s) 147, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.