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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1083 |
| AccB1I | GGYRCC | 1 cut(s) | 1346 |
| AccI | GTMKAC | 1 cut(s) | 422 |
| AciI | CCGC | 3 cut(s) | 1134, 1275, 1344 |
| AclI | AACGTT | 1 cut(s) | 1062 |
| AclWI | GGATC | 3 cut(s) | 444, 1276, 1289 |
| AcsI | RAATTY | 3 cut(s) | 74, 898, 1021 |
| AfaI | GTAC | 2 cut(s) | 1014, 1097 |
| AgsI | TTSAA | 4 cut(s) | 110, 1034, 1048, 1087 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 942, 974 |
| AluBI | AGCT | 5 cut(s) | 281, 315, 1108, 1456, 1593 |
| AluI | AGCT | 5 cut(s) | 281, 315, 1108, 1456, 1593 |
| Alw21I | GWGCWC | 3 cut(s) | 183, 1310, 1458 |
| Alw26I | GTCTC | 1 cut(s) | 575 |
| Alw44I | GTGCAC | 2 cut(s) | 179, 1306 |
| AlwI | GGATC | 3 cut(s) | 444, 1276, 1289 |
| AoxI | GGCC | 1 cut(s) | 1218 |
| ApaLI | GTGCAC | 2 cut(s) | 179, 1306 |
| ApoI | RAATTY | 3 cut(s) | 74, 898, 1021 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 833, 865 |
| AseI | ATTAAT | 1 cut(s) | 732 |
| AspS9I | GGNCC | 1 cut(s) | 1219 |
| AsuC2I | CCSGG | 1 cut(s) | 438 |
| AsuHPI | GGTGA | 2 cut(s) | 275, 1220 |
| BaeGI | GKGCMC | 3 cut(s) | 183, 1217, 1310 |
| BamHI | GGATCC | 1 cut(s) | 1281 |
| BanI | GGYRCC | 1 cut(s) | 1346 |
| BanII | GRGCYC | 1 cut(s) | 1458 |
| Bbv12I | GWGCWC | 3 cut(s) | 183, 1310, 1458 |
| BccI | CCATC | 3 cut(s) | 1175, 1484, 1488 |
| BceAI | ACGGC | 2 cut(s) | 1233, 1326 |
| BcnI | CCSGG | 1 cut(s) | 438 |
| BcoDI | GTCTC | 1 cut(s) | 575 |
| BfaI | CTAG | 5 cut(s) | 278, 686, 1056, 1286, 1376 |
| BfuAI | ACCTGC | 1 cut(s) | 1083 |
| BisI | GCNGC | 3 cut(s) | 1135, 1276, 1345 |
| BlsI | GCNGC | 3 cut(s) | 1136, 1277, 1346 |
| Bme1390I | CCNGG | 1 cut(s) | 438 |
| BmgT120I | GGNCC | 1 cut(s) | 1219 |
| BmiI | GGNNCC | 3 cut(s) | 203, 1283, 1348 |
| BmrFI | CCNGG | 1 cut(s) | 438 |
| BmsI | GCATC | 2 cut(s) | 525, 902 |
| BpuMI | CCSGG | 1 cut(s) | 438 |
| Bsa29I | ATCGAT | 1 cut(s) | 448 |
| BsaBI | GATNNNNATC | 1 cut(s) | 801 |
| BsaJI | CCNNGG | 1 cut(s) | 436 |
| Bse8I | GATNNNNATC | 1 cut(s) | 801 |
| BseCI | ATCGAT | 1 cut(s) | 448 |
| BseDI | CCNNGG | 1 cut(s) | 436 |
| BseGI | GGATG | 3 cut(s) | 968, 1186, 1476 |
| BseJI | GATNNNNATC | 1 cut(s) | 801 |
| BseSI | GKGCMC | 3 cut(s) | 183, 1217, 1310 |
| BshFI | GGCC | 1 cut(s) | 1220 |
| BshNI | GGYRCC | 1 cut(s) | 1346 |
| BshVI | ATCGAT | 1 cut(s) | 448 |
| BsiHKAI | GWGCWC | 3 cut(s) | 183, 1310, 1458 |
| BsiSI | CCGG | 1 cut(s) | 438 |
| BsmAI | GTCTC | 1 cut(s) | 575 |
| BsmI | GAATGC | 3 cut(s) | 410, 848, 935 |
| BsnI | GGCC | 1 cut(s) | 1220 |
| Bsp1286I | GDGCHC | 4 cut(s) | 183, 1217, 1310, 1458 |
| Bsp143I | GATC | 3 cut(s) | 445, 449, 1281 |
| BspACI | CCGC | 3 cut(s) | 1134, 1275, 1344 |
| BspANI | GGCC | 1 cut(s) | 1220 |
| BspDI | ATCGAT | 1 cut(s) | 448 |
| BspLI | GGNNCC | 3 cut(s) | 203, 1283, 1348 |
| BspMI | ACCTGC | 1 cut(s) | 1083 |
| BspPI | GGATC | 3 cut(s) | 444, 1276, 1289 |
| BspT107I | GGYRCC | 1 cut(s) | 1346 |
| BssECI | CCNNGG | 1 cut(s) | 436 |
| BssMI | GATC | 3 cut(s) | 445, 449, 1281 |
| Bst4CI | ACNGT | 1 cut(s) | 651 |
| Bst6I | CTCTTC | 1 cut(s) | 881 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1341 |
| BstC8I | GCNNGC | 1 cut(s) | 908 |
| BstDEI | CTNAG | 4 cut(s) | 233, 386, 915, 1406 |
| BstF5I | GGATG | 3 cut(s) | 968, 1186, 1476 |
| BstKTI | GATC | 3 cut(s) | 448, 452, 1284 |
| BstMAI | GTCTC | 1 cut(s) | 575 |
| BstMBI | GATC | 3 cut(s) | 445, 449, 1281 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1341, 1560 |
| BstNSI | RCATGY | 2 cut(s) | 910, 1498 |
| BstSCI | CCNGG | 1 cut(s) | 436 |
| BstSLI | GKGCMC | 3 cut(s) | 183, 1217, 1310 |
| BstX2I | RGATCY | 1 cut(s) | 1281 |
| BstYI | RGATCY | 1 cut(s) | 1281 |
| Bsu15I | ATCGAT | 1 cut(s) | 448 |
| BsuRI | GGCC | 1 cut(s) | 1220 |
| BsuTUI | ATCGAT | 1 cut(s) | 448 |
| BtsCI | GGATG | 3 cut(s) | 968, 1186, 1476 |
| BveI | ACCTGC | 1 cut(s) | 1083 |
| Cac8I | GCNNGC | 1 cut(s) | 908 |
| Cfr13I | GGNCC | 1 cut(s) | 1219 |
| ClaI | ATCGAT | 1 cut(s) | 448 |
| CseI | GACGC | 1 cut(s) | 755 |
| Csp6I | GTAC | 2 cut(s) | 1013, 1096 |
| CviQI | GTAC | 2 cut(s) | 1013, 1096 |
| DdeI | CTNAG | 4 cut(s) | 233, 386, 915, 1406 |
| DpnI | GATC | 3 cut(s) | 447, 451, 1283 |
| DpnII | GATC | 3 cut(s) | 445, 449, 1281 |
| DraI | TTTAAA | 3 cut(s) | 360, 396, 1026 |
| Eam1104I | CTCTTC | 1 cut(s) | 881 |
| EarI | CTCTTC | 1 cut(s) | 881 |
| Ecl136II | GAGCTC | 1 cut(s) | 1456 |
| Eco24I | GRGCYC | 1 cut(s) | 1458 |
| Eco53kI | GAGCTC | 1 cut(s) | 1456 |
| EcoICRI | GAGCTC | 1 cut(s) | 1456 |
| EcoRI | GAATTC | 1 cut(s) | 74 |
| EcoT22I | ATGCAT | 3 cut(s) | 156, 908, 1496 |
| EcoT38I | GRGCYC | 1 cut(s) | 1458 |
| FauNDI | CATATG | 1 cut(s) | 714 |
| FblI | GTMKAC | 1 cut(s) | 422 |
| Fnu4HI | GCNGC | 3 cut(s) | 1135, 1276, 1345 |
| FokI | GGATG | 3 cut(s) | 975, 1193, 1463 |
| FriOI | GRGCYC | 1 cut(s) | 1458 |
| Fsp4HI | GCNGC | 3 cut(s) | 1135, 1276, 1345 |
| FspBI | CTAG | 5 cut(s) | 278, 686, 1056, 1286, 1376 |
| GluI | GCNGC | 3 cut(s) | 1135, 1276, 1345 |
| HaeIII | GGCC | 1 cut(s) | 1220 |
| HapII | CCGG | 1 cut(s) | 438 |
| HgaI | GACGC | 1 cut(s) | 755 |
| HinfI | GANTC | 8 cut(s) | 272, 371, 419, 525, 545, 583, 619, 1100 |
| HpaII | CCGG | 1 cut(s) | 438 |
| HphI | GGTGA | 2 cut(s) | 275, 1220 |
| Hpy166II | GTNNAC | 6 cut(s) | 6, 43, 181, 423, 740, 1308 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 445, 1156 |
| Hpy188III | TCNNGA | 4 cut(s) | 193, 940, 1084, 1376 |
| Hpy8I | GTNNAC | 6 cut(s) | 6, 43, 181, 423, 740, 1308 |
| Hpy99I | CGWCG | 1 cut(s) | 749 |
| HpyAV | CCTTC | 3 cut(s) | 1128, 1382, 1449 |
| HpyCH4III | ACNGT | 1 cut(s) | 651 |
| HpyCH4IV | ACGT | 1 cut(s) | 1062 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1341, 1560 |
| HpyF3I | CTNAG | 4 cut(s) | 233, 386, 915, 1406 |
| HpySE526I | ACGT | 1 cut(s) | 1062 |
| Kzo9I | GATC | 3 cut(s) | 445, 449, 1281 |
| LmnI | GCTCC | 2 cut(s) | 1461, 1539 |
| LpnPI | CCDG | 5 cut(s) | 105, 451, 555, 1078, 1264 |
| LweI | GCATC | 2 cut(s) | 525, 902 |
| MaeI | CTAG | 5 cut(s) | 278, 686, 1056, 1286, 1376 |
| MaeII | ACGT | 1 cut(s) | 1062 |
| MaeIII | GTNAC | 2 cut(s) | 671, 853 |
| MalI | GATC | 3 cut(s) | 447, 451, 1283 |
| MboI | GATC | 3 cut(s) | 445, 449, 1281 |
| MboII | GAAGA | 5 cut(s) | 90, 687, 868, 1266, 1456 |
| MfeI | CAATTG | 1 cut(s) | 473 |
| MflI | RGATCY | 1 cut(s) | 1281 |
| MhlI | GDGCHC | 4 cut(s) | 183, 1217, 1310, 1458 |
| MlyI | GAGTC | 7 cut(s) | 380, 428, 519, 539, 577, 613, 1094 |
| MmeI | TCCRAC | 1 cut(s) | 1091 |
| MnlI | CCTC | 7 cut(s) | 437, 479, 682, 1123, 1204, 1263, 1282 |
| Mph1103I | ATGCAT | 3 cut(s) | 156, 908, 1496 |
| MslI | CAYNNNNRTG | 3 cut(s) | 842, 985, 1495 |
| MspI | CCGG | 1 cut(s) | 438 |
| MspR9I | CCNGG | 1 cut(s) | 438 |
| MunI | CAATTG | 1 cut(s) | 473 |
| Mva1269I | GAATGC | 3 cut(s) | 410, 848, 935 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1341, 1560 |
| NciI | CCSGG | 1 cut(s) | 438 |
| NdeI | CATATG | 1 cut(s) | 714 |
| NdeII | GATC | 3 cut(s) | 445, 449, 1281 |
| NlaIV | GGNNCC | 3 cut(s) | 203, 1283, 1348 |
| NsiI | ATGCAT | 3 cut(s) | 156, 908, 1496 |
| NspI | RCATGY | 2 cut(s) | 910, 1498 |
| PaeI | GCATGC | 1 cut(s) | 910 |
| PctI | GAATGC | 3 cut(s) | 410, 848, 935 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 3 cut(s) | 1136, 1277, 1346 |
| PleI | GAGTC | 7 cut(s) | 379, 427, 519, 539, 577, 613, 1094 |
| PpsI | GAGTC | 7 cut(s) | 379, 427, 519, 539, 577, 613, 1094 |
| PshBI | ATTAAT | 1 cut(s) | 732 |
| Psp124BI | GAGCTC | 1 cut(s) | 1458 |
| Psp1406I | AACGTT | 1 cut(s) | 1062 |
| PspN4I | GGNNCC | 3 cut(s) | 203, 1283, 1348 |
| PspPI | GGNCC | 1 cut(s) | 1219 |
| PsuI | RGATCY | 1 cut(s) | 1281 |
| RsaI | GTAC | 2 cut(s) | 1014, 1097 |
| RsaNI | GTAC | 2 cut(s) | 1013, 1096 |
| RseI | CAYNNNNRTG | 3 cut(s) | 842, 985, 1495 |
| SacI | GAGCTC | 1 cut(s) | 1458 |
| SatI | GCNGC | 3 cut(s) | 1135, 1276, 1345 |
| Sau3AI | GATC | 3 cut(s) | 445, 449, 1281 |
| Sau96I | GGNCC | 1 cut(s) | 1219 |
| SchI | GAGTC | 7 cut(s) | 380, 428, 519, 539, 577, 613, 1094 |
| ScrFI | CCNGG | 1 cut(s) | 438 |
| SduI | GDGCHC | 4 cut(s) | 183, 1217, 1310, 1458 |
| SfaNI | GCATC | 2 cut(s) | 525, 902 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 842, 985, 1495 |
| SphI | GCATGC | 1 cut(s) | 910 |
| SsiI | CCGC | 3 cut(s) | 1134, 1275, 1344 |
| SspMI | CTAG | 5 cut(s) | 278, 686, 1056, 1286, 1376 |
| SstI | GAGCTC | 1 cut(s) | 1458 |
| StyD4I | CCNGG | 1 cut(s) | 436 |
| TaaI | ACNGT | 1 cut(s) | 651 |
| TaiI | ACGT | 1 cut(s) | 1065 |
| TaqI | TCGA | 3 cut(s) | 270, 448, 744 |
| TatI | WGTACW | 1 cut(s) | 1012 |
| TauI | GCSGC | 3 cut(s) | 1137, 1278, 1347 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| VneI | GTGCAC | 2 cut(s) | 179, 1306 |
| VspI | ATTAAT | 1 cut(s) | 732 |
| XapI | RAATTY | 3 cut(s) | 74, 898, 1021 |
| XbaI | TCTAGA | 1 cut(s) | 1375 |
| XceI | RCATGY | 2 cut(s) | 910, 1498 |
| XmiI | GTMKAC | 1 cut(s) | 422 |
| XspI | CTAG | 5 cut(s) | 278, 686, 1056, 1286, 1376 |
| Zsp2I | ATGCAT | 3 cut(s) | 156, 908, 1496 |