pycom12659g00170

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012659
Physical Location & Seq
Forward (+)
287234 .. 288029
796 bp
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UTR
Exon/CDS
Intron
pycom12659g00170.3

Sequence Viewer

Length: 558 bp
ATGTTTATATGCACTCAAAAACAAAACTTAACCCATGAACTTCAAAGCCTAGTAGATAGCAATACCTTTGTAGATTCCTCTTTGCATAAGCAAAGGCTAATCACCCAAAGAGAGGGTTTCTCCAAGTTCCCAAAATTGAGAACCTCTAAGTCTCCACACCAAGGTAAGATTGGAGAAGAAATGAGTGACCTTGAAGAAGTAAGATTAGAAAGGAGAGTTTGTGTTTCTCCAATTTCCCCAAAAAAAACCCTTAATGAATTTTTTTGGCTATTAAGTCACACTTGTACCTTAATTCATTTGAGTGGAAAACTTGTAAATAAGTCCAAAACCCACTCTTTCTCTAAATGGCCGGCCTTAGGGTATTCATTGGGCTATTTGGGCCTTTGTGAATCATTATTCATTAAGTTGTCCAAAACTATCCCAAGGTCTTTTAACGAACTTATTCTATTCTTACTCATCTCCGTTGAATCTTCAATCTCTACCTTACACGGTGTACCATCCATTAGGTTCCTTTTAGCGAGGCAGTGGGCGATTCAAACTCTTTCAAATCGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.16

Weight (kDa)

9.73

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 2 cut(s) 286, 495
AfiI CCNNNNNNNGG 3 cut(s) 112, 161, 356
AgsI TTSAA 6 cut(s) 44, 194, 467, 474, 536, 546
Alw26I GTCTC 1 cut(s) 156
AoxI GGCC 3 cut(s) 347, 351, 379
ApoI RAATTY 1 cut(s) 257
Asp700I GAANNNNTTC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 94
AxyI CCTNAGG 1 cut(s) 355
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BccI CCATC 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bsa29I ATCGAT 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 160, 422
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 161, 356
Bse118I RCCGGY 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 355
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 160, 422
BseGI GGATG 1 cut(s) 497
BseLI CCNNNNNNNGG 3 cut(s) 112, 161, 356
BshFI GGCC 3 cut(s) 349, 353, 381
BshVI ATCGAT 1 cut(s) 550
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 112, 161, 356
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 3 cut(s) 349, 353, 381
BspANI GGCC 3 cut(s) 349, 353, 381
BspDI ATCGAT 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 160, 422
BssT1I CCWWGG 2 cut(s) 160, 422
Bst4CI ACNGT 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 147, 355
BstF5I GGATG 1 cut(s) 497
BstMAI GTCTC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 550
Bsu36I CCTNAGG 1 cut(s) 355
BsuRI GGCC 3 cut(s) 349, 353, 381
BsuTUI ATCGAT 1 cut(s) 550
BtsCI GGATG 1 cut(s) 497
BtsI GCAGTG 1 cut(s) 530
BtsIMutI CAGTG 1 cut(s) 530
Cac8I GCNNGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 550
Csp6I GTAC 2 cut(s) 285, 494
CviAII CATG 1 cut(s) 35
CviJI RGCY 7 cut(s) 48, 97, 268, 349, 353, 372, 381
CviKI_1 RGCY 7 cut(s) 48, 97, 268, 349, 353, 372, 381
CviQI GTAC 2 cut(s) 285, 494
DdeI CTNAG 2 cut(s) 147, 355
EaeI YGGCCR 1 cut(s) 347
Eco130I CCWWGG 2 cut(s) 160, 422
Eco81I CCTNAGG 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 160, 422
ErhI CCWWGG 2 cut(s) 160, 422
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 8, 10, 36, 87
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 1 cut(s) 34
FokI GGATG 1 cut(s) 484
FseI GGCCGGCC 1 cut(s) 353
FspBI CTAG 1 cut(s) 50
HaeIII GGCC 3 cut(s) 349, 353, 381
HapII CCGG 1 cut(s) 350
Hin1II CATG 1 cut(s) 38
HinfI GANTC 4 cut(s) 74, 389, 467, 532
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 494
Hpy8I GTNNAC 1 cut(s) 494
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4V TGCA 2 cut(s) 12, 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 2 cut(s) 147, 355
Hsp92II CATG 1 cut(s) 38
KroI GCCGGC 1 cut(s) 349
KroNI GCCGGC 1 cut(s) 351
LpnPI CCDG 1 cut(s) 363
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 2 cut(s) 185, 275
MboII GAAGA 3 cut(s) 188, 206, 462
MluCI AATT 4 cut(s) 134, 231, 257, 291
MnlI CCTC 4 cut(s) 88, 106, 154, 513
MroNI GCCGGC 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 6 cut(s) 29, 252, 272, 290, 402, 432
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 378
NaeI GCCGGC 1 cut(s) 351
NgoMIV GCCGGC 1 cut(s) 349
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 2 cut(s) 185, 275
PdiI GCCGGC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 4 cut(s) 74, 389, 467, 532
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 379
RigI GGCCGGCC 1 cut(s) 353
RsaI GTAC 2 cut(s) 286, 495
RsaNI GTAC 2 cut(s) 285, 494
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 6 cut(s) 29, 252, 272, 290, 402, 432
Sau96I GGNCC 1 cut(s) 379
SetI ASST 8 cut(s) 68, 146, 166, 192, 290, 428, 485, 509
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 4 cut(s) 134, 231, 257, 291
SspMI CTAG 1 cut(s) 50
StyI CCWWGG 2 cut(s) 160, 422
TaaI ACNGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 550
TasI AATT 4 cut(s) 134, 231, 257, 291
TfiI GAWTC 4 cut(s) 74, 389, 467, 532
Tru1I TTAA 6 cut(s) 29, 252, 272, 290, 402, 432
Tru9I TTAA 6 cut(s) 29, 252, 272, 290, 402, 432
TscAI CASTG 1 cut(s) 530
TseFI GTSAC 2 cut(s) 185, 275
Tsp45I GTSAC 2 cut(s) 185, 275
TspDTI ATGAA 5 cut(s) 51, 270, 284, 354, 388
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 1 cut(s) 530
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.