pycom17g17520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000608
Physical Location & Seq
Forward (+)
15210491 .. 15211913
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17520.8

Sequence Viewer

Length: 873 bp
ATGCACGAGAACAAGCCATTTAAGTCGCATGAATATCTAGAGGGTCCTTCTCCACACATGACACATATGACAATGCCCCAAATTAATCGTGAGAATAACGCAATCAAATTATTCTTATCAAGTTCCCTATATGAACTACATGATAGAGATACATATCAAAGATCATTAAGTTCTACGAAAATCATAAGCATTGACAAGGTATTCGTAACTATGAACTGCATGATACTCCTATTAGGTGAAATTCCCTTATATTTTAGCATCAAATTCATGCATCACATTCATGTTTTACGAAACAATAACTGGAGAATATCAATTCATATCACATATATGTTCATGGCTTTGAATTCAATTGAAAACCAAATTAAAATAAACATCGAACTAAAACTAAGGATAAAAAGAACCCAGAAACGCTTCAACACTCTAAAGTTAGCAGCGGCATTCGCTTGGATGGTGGCAGGCACGACACTCTTCCTCTCCTTCCTTCTTTGCACGACACAATTCTCTGAATTTCTCTCATGTGTGTTGCTTCTCTTTTCTGCAGCAGATTTATGTATTTATATGCTAGGGTTTTGCACAATTTCTGAAGGGAAAAGGATTGAGAAGGATAGGGCTTCTAGAACCATATATTTATGTATTAATCTGAAATTAAGTCCTCTTTGCAGCAATTTGGATAATGTTTCCTTCTTCTTAGCTGATTCCTTATCTTCCAAGCTTCCGAATTTGTTTCTCCAGATATTAAGCACATTCCTAGCCTTTCTTGAACTTCAAATTCCCCAAAATTGCTCTAAAATGCACCAAAATGCACTTTCTTGCCTCTTTTGCCATTTGAACCTACAAACACACGAAAATAGCTTAAATCACTATAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.65

Weight (kDa)

8.98

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 434
AcsI RAATTY 6 cut(s) 240, 263, 343, 506, 718, 768
AcuI CTGAAG 1 cut(s) 603
AgsI TTSAA 7 cut(s) 343, 348, 353, 415, 761, 767, 829
AluBI AGCT 3 cut(s) 692, 712, 852
AluI AGCT 3 cut(s) 692, 712, 852
ApeKI GCWGC 3 cut(s) 431, 539, 660
ApoI RAATTY 6 cut(s) 240, 263, 343, 506, 718, 768
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AseI ATTAAT 2 cut(s) 84, 636
Asp700I GAANNNNTTC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 44
BauI CACGAG 1 cut(s) 5
BbvI GCAGC 3 cut(s) 443, 551, 672
BccI CCATC 1 cut(s) 442
BfaI CTAG 4 cut(s) 38, 563, 615, 749
BfmI CTRYAG 1 cut(s) 537
BisI GCNGC 4 cut(s) 432, 435, 540, 661
BlsI GCNGC 4 cut(s) 433, 436, 541, 662
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 2 cut(s) 267, 280
BpmI CTGGAG 2 cut(s) 322, 713
BsaBI GATNNNNATC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 153
BseGI GGATG 1 cut(s) 453
BseJI GATNNNNATC 1 cut(s) 153
BseNI ACTGG 1 cut(s) 305
BseXI GCAGC 3 cut(s) 443, 551, 672
BsmI GAATGC 1 cut(s) 437
Bsp143I GATC 1 cut(s) 161
BspACI CCGC 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 541
BsrI ACTGG 1 cut(s) 305
BssMI GATC 1 cut(s) 161
BssSI CACGAG 1 cut(s) 5
Bst2BI CACGAG 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 386, 688
BstF5I GGATG 1 cut(s) 453
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 440, 819
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 3 cut(s) 443, 551, 672
BtsCI GGATG 1 cut(s) 453
Cac8I GCNNGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 8 cut(s) 29, 58, 140, 220, 268, 281, 334, 516
CviJI RGCY 7 cut(s) 16, 338, 611, 692, 712, 752, 852
CviKI_1 RGCY 7 cut(s) 16, 338, 611, 692, 712, 752, 852
DdeI CTNAG 2 cut(s) 386, 688
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 273
FaeI CATG 8 cut(s) 32, 61, 143, 223, 271, 284, 337, 519
FatI CATG 8 cut(s) 28, 57, 139, 219, 267, 280, 333, 515
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 432, 435, 540, 661
FokI GGATG 1 cut(s) 460
Fsp4HI GCNGC 4 cut(s) 432, 435, 540, 661
FspBI CTAG 4 cut(s) 38, 563, 615, 749
GluI GCNGC 4 cut(s) 432, 435, 540, 661
GsuI CTGGAG 2 cut(s) 322, 713
Hin1II CATG 8 cut(s) 32, 61, 143, 223, 271, 284, 337, 519
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 1 cut(s) 695
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 4 cut(s) 505, 583, 642, 717
Hpy188III TCNNGA 5 cut(s) 38, 89, 615, 730, 758
HpyAV CCTTC 6 cut(s) 57, 487, 491, 578, 595, 691
HpyCH4V TGCA 9 cut(s) 4, 219, 271, 489, 539, 573, 660, 793, 803
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 819
HpyF3I CTNAG 2 cut(s) 386, 688
Hsp92II CATG 8 cut(s) 32, 61, 143, 223, 271, 284, 337, 519
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 4 cut(s) 286, 416, 441, 743
Lsp1109I GCAGC 3 cut(s) 443, 551, 672
LweI GCATC 2 cut(s) 267, 280
MaeI CTAG 4 cut(s) 38, 563, 615, 749
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 3 cut(s) 460, 676, 696
MfeI CAATTG 1 cut(s) 348
MnlI CCTC 4 cut(s) 34, 482, 663, 824
Mph1103I ATGCAT 1 cut(s) 273
MroXI GAANNNNTTC 1 cut(s) 410
MseI TTAA 8 cut(s) 21, 84, 167, 363, 636, 647, 737, 854
MslI CAYNNNNRTG 3 cut(s) 279, 326, 798
MspA1I CMGCKG 1 cut(s) 434
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 440, 819
NdeI CATATG 1 cut(s) 66
NdeII GATC 1 cut(s) 161
NlaIII CATG 8 cut(s) 32, 61, 143, 223, 271, 284, 337, 519
NlaIV GGNNCC 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 273
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 410
PfeI GAWTC 1 cut(s) 695
PkrI GCNGC 4 cut(s) 433, 436, 541, 662
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 2 cut(s) 84, 636
Psp5II RGGWCCY 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
PstI CTGCAG 1 cut(s) 541
RseI CAYNNNNRTG 3 cut(s) 279, 326, 798
SaqAI TTAA 8 cut(s) 21, 84, 167, 363, 636, 647, 737, 854
SatI GCNGC 4 cut(s) 432, 435, 540, 661
Sau3AI GATC 1 cut(s) 161
Sau96I GGNCC 1 cut(s) 44
SetI ASST 6 cut(s) 201, 238, 694, 714, 834, 854
SfaNI GCATC 2 cut(s) 267, 280
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 3 cut(s) 279, 326, 798
SsiI CCGC 1 cut(s) 434
SspMI CTAG 4 cut(s) 38, 563, 615, 749
TaqI TCGA 1 cut(s) 375
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 1 cut(s) 695
Tru1I TTAA 8 cut(s) 21, 84, 167, 363, 636, 647, 737, 854
Tru9I TTAA 8 cut(s) 21, 84, 167, 363, 636, 647, 737, 854
TseI GCWGC 3 cut(s) 431, 539, 660
TspDTI ATGAA 7 cut(s) 45, 147, 227, 256, 269, 305, 322
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 2 cut(s) 84, 636
XapI RAATTY 6 cut(s) 240, 263, 343, 506, 718, 768
XbaI TCTAGA 2 cut(s) 37, 614
XmnI GAANNNNTTC 1 cut(s) 410
XspI CTAG 4 cut(s) 38, 563, 615, 749
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.