pycom12426g00140

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
Physical Location & Seq
Forward (+)
78814 .. 79402
589 bp
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UTR
Exon/CDS
Intron
pycom12426g00140.2

Sequence Viewer

Length: 465 bp
ATGGGGAGAATGAGAGAAAATTCGTATGGATGTGTATGGATGTCTAGAATCTCCCATAAGTGCGGCAGATTATGTATATATAGAGGAAGAAAGGTTAAGGCAATAAGAAAAAGGGTAACAAATCAGAATTCTAAGAGGAAAAGGAAAGGAAAGTTGCGTTTGGAAGAAAAGGGTAAGGATATATGCGGCAAGGACATGGATAGTGCAAGGGATCTTGGTTTGTGTCCTAAAATAGATAAGGAAAGGTTAAACCAAAATAGGAAACCTTGGCTTAACTTTCCTACTTCAAGTAGGAAACCTTCTTTGACTAGGAATCCTTCTTTGATTAGGAATCCTACTTTGATTAGGAATCCTAACATCTTTAAGTCTTCAATTTCGTCCATTCCTTTTGCTCCAAGCATATGCTATCCATTCCAAGCCCAATTTTGCTCCAAAATGCACCTTTTTGCTTCCTTAGCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.82

Weight (kDa)

10.77

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 186
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 19, 127
AgsI TTSAA 2 cut(s) 288, 372
AlwI GGATC 1 cut(s) 219
ApoI RAATTY 2 cut(s) 19, 127
BarI GAAGNNNNNNTAC 2 cut(s) 283, 315
BbsI GAAGAC 1 cut(s) 360
BfaI CTAG 2 cut(s) 45, 309
BisI GCNGC 2 cut(s) 64, 187
BlsI GCNGC 2 cut(s) 65, 188
BpiI GAAGAC 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 35, 45
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 2 cut(s) 63, 186
BspPI GGATC 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 132, 454
BstF5I GGATG 2 cut(s) 35, 45
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BtsCI GGATG 2 cut(s) 35, 45
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 271, 419, 458
CviKI_1 RGCY 3 cut(s) 271, 419, 458
DdeI CTNAG 2 cut(s) 132, 454
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 1 cut(s) 199
FatI CATG 1 cut(s) 195
FauNDI CATATG 2 cut(s) 401, 461
Fnu4HI GCNGC 2 cut(s) 64, 187
FokI GGATG 2 cut(s) 42, 52
Fsp4HI GCNGC 2 cut(s) 64, 187
FspBI CTAG 2 cut(s) 45, 309
GluI GCNGC 2 cut(s) 64, 187
Hin1II CATG 1 cut(s) 199
HinfI GANTC 4 cut(s) 48, 313, 331, 349
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 45
HpyAV CCTTC 2 cut(s) 309, 327
HpyCH4V TGCA 2 cut(s) 206, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 132, 454
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 397, 434
MaeI CTAG 2 cut(s) 45, 309
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 3 cut(s) 99, 176, 360
MflI RGATCY 1 cut(s) 211
MluCI AATT 4 cut(s) 19, 127, 372, 422
MnlI CCTC 2 cut(s) 77, 129
MseI TTAA 4 cut(s) 96, 248, 273, 363
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeI CATATG 2 cut(s) 401, 461
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 199
PfeI GAWTC 4 cut(s) 48, 313, 331, 349
PkrI GCNGC 2 cut(s) 65, 188
PsuI RGATCY 1 cut(s) 211
SaqAI TTAA 4 cut(s) 96, 248, 273, 363
SatI GCNGC 2 cut(s) 64, 187
Sau3AI GATC 1 cut(s) 211
SetI ASST 5 cut(s) 96, 248, 268, 301, 444
Sse9I AATT 4 cut(s) 19, 127, 372, 422
SsiI CCGC 2 cut(s) 63, 186
SspMI CTAG 2 cut(s) 45, 309
StyI CCWWGG 1 cut(s) 266
TasI AATT 4 cut(s) 19, 127, 372, 422
TauI GCSGC 2 cut(s) 66, 189
TfiI GAWTC 4 cut(s) 48, 313, 331, 349
Tru1I TTAA 4 cut(s) 96, 248, 273, 363
Tru9I TTAA 4 cut(s) 96, 248, 273, 363
XapI RAATTY 2 cut(s) 19, 127
XbaI TCTAGA 1 cut(s) 44
XspI CTAG 2 cut(s) 45, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.