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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1100 |
| AccB1I | GGYRCC | 1 cut(s) | 1509 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 735, 1133, 1348, 1359 |
| AccI | GTMKAC | 1 cut(s) | 1501 |
| AccII | CGCG | 1 cut(s) | 1506 |
| AciI | CCGC | 4 cut(s) | 792, 1201, 1393, 1506 |
| AclI | AACGTT | 1 cut(s) | 928 |
| AclWI | GGATC | 1 cut(s) | 1582 |
| AcoI | YGGCCR | 1 cut(s) | 1350 |
| AcsI | RAATTY | 4 cut(s) | 1253, 1286, 1792, 1820 |
| AcyI | GRCGYC | 1 cut(s) | 1739 |
| AdeI | CACNNNGTG | 1 cut(s) | 1359 |
| AfaI | GTAC | 3 cut(s) | 1125, 1186, 1904 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 88, 735, 1133, 1348, 1359, 1489 |
| AflIII | ACRYGT | 1 cut(s) | 899 |
| AgsI | TTSAA | 8 cut(s) | 152, 198, 282, 326, 454, 933, 1561, 1820 |
| AjnI | CCWGG | 2 cut(s) | 1069, 1488 |
| AluBI | AGCT | 7 cut(s) | 57, 315, 695, 1031, 1081, 1372, 1381 |
| AluI | AGCT | 7 cut(s) | 57, 315, 695, 1031, 1081, 1372, 1381 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| AlwI | GGATC | 1 cut(s) | 1582 |
| AoxI | GGCC | 3 cut(s) | 75, 1350, 1491 |
| ApoI | RAATTY | 4 cut(s) | 1253, 1286, 1792, 1820 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 557, 589 |
| AseI | ATTAAT | 1 cut(s) | 878 |
| AspA2I | CCTAGG | 1 cut(s) | 442 |
| AspS9I | GGNCC | 4 cut(s) | 76, 1073, 1492, 1702 |
| AsuHPI | GGTGA | 4 cut(s) | 678, 1533, 1542, 1747 |
| AvaII | GGWCC | 2 cut(s) | 1073, 1702 |
| AvrII | CCTAGG | 1 cut(s) | 442 |
| BaeGI | GKGCMC | 1 cut(s) | 1512 |
| BalI | TGGCCA | 1 cut(s) | 1352 |
| BanI | GGYRCC | 1 cut(s) | 1509 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 193, 225 |
| BbsI | GAAGAC | 1 cut(s) | 270 |
| BccI | CCATC | 4 cut(s) | 1078, 1344, 1404, 1532 |
| BceAI | ACGGC | 2 cut(s) | 105, 136 |
| BciT130I | CCWGG | 2 cut(s) | 1071, 1490 |
| BciVI | GTATCC | 1 cut(s) | 108 |
| BclI | TGATCA | 1 cut(s) | 1243 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BfaI | CTAG | 7 cut(s) | 219, 443, 615, 692, 762, 905, 1373 |
| BfuAI | ACCTGC | 1 cut(s) | 1100 |
| BfuI | GTATCC | 1 cut(s) | 108 |
| BisI | GCNGC | 1 cut(s) | 793 |
| BlnI | CCTAGG | 1 cut(s) | 442 |
| BlsI | GCNGC | 1 cut(s) | 794 |
| Bme1390I | CCNGG | 2 cut(s) | 1071, 1490 |
| Bme18I | GGWCC | 2 cut(s) | 1073, 1702 |
| BmgT120I | GGNCC | 4 cut(s) | 76, 1073, 1492, 1702 |
| BmiI | GGNNCC | 3 cut(s) | 1494, 1511, 1703 |
| BmrFI | CCNGG | 2 cut(s) | 1071, 1490 |
| BmsI | GCATC | 7 cut(s) | 627, 755, 1096, 1231, 1374, 1427, 1653 |
| BpiI | GAAGAC | 1 cut(s) | 270 |
| BpmI | CTGGAG | 2 cut(s) | 325, 870 |
| BpuEI | CTTGAG | 2 cut(s) | 473, 1017 |
| Bsa29I | ATCGAT | 2 cut(s) | 668, 1434 |
| BsaHI | GRCGYC | 1 cut(s) | 1739 |
| BsaJI | CCNNGG | 3 cut(s) | 442, 1069, 1727 |
| BsaWI | WCCGGW | 1 cut(s) | 1261 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 88, 735, 1133, 1348, 1359, 1489 |
| Bse3DI | GCAATG | 1 cut(s) | 1834 |
| BseBI | CCWGG | 2 cut(s) | 1071, 1490 |
| BseCI | ATCGAT | 2 cut(s) | 668, 1434 |
| BseDI | CCNNGG | 3 cut(s) | 442, 1069, 1727 |
| BseGI | GGATG | 3 cut(s) | 1193, 1396, 1644 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 88, 735, 1133, 1348, 1359, 1489 |
| BseMI | GCAATG | 1 cut(s) | 1834 |
| BseMII | CTCAG | 1 cut(s) | 476 |
| BseSI | GKGCMC | 1 cut(s) | 1512 |
| BseYI | CCCAGC | 1 cut(s) | 936 |
| BsgI | GTGCAG | 1 cut(s) | 1461 |
| Bsh1236I | CGCG | 1 cut(s) | 1506 |
| BshFI | GGCC | 3 cut(s) | 77, 1352, 1493 |
| BshNI | GGYRCC | 1 cut(s) | 1509 |
| BshVI | ATCGAT | 2 cut(s) | 668, 1434 |
| BsiSI | CCGG | 1 cut(s) | 1262 |
| BslFI | GGGAC | 2 cut(s) | 1579, 1715 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 88, 735, 1133, 1348, 1359, 1489 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 2 cut(s) | 1579, 1715 |
| BsmI | GAATGC | 4 cut(s) | 351, 572, 661, 1041 |
| BsnI | GGCC | 3 cut(s) | 77, 1352, 1493 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1512 |
| Bsp143I | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| BspACI | CCGC | 4 cut(s) | 792, 1201, 1393, 1506 |
| BspANI | GGCC | 3 cut(s) | 77, 1352, 1493 |
| BspCNI | CTCAG | 1 cut(s) | 475 |
| BspDI | ATCGAT | 2 cut(s) | 668, 1434 |
| BspFNI | CGCG | 1 cut(s) | 1506 |
| BspHI | TCATGA | 2 cut(s) | 672, 1246 |
| BspLI | GGNNCC | 3 cut(s) | 1494, 1511, 1703 |
| BspMI | ACCTGC | 1 cut(s) | 1100 |
| BspPI | GGATC | 1 cut(s) | 1582 |
| BspT107I | GGYRCC | 1 cut(s) | 1509 |
| BsrDI | GCAATG | 1 cut(s) | 1834 |
| BssECI | CCNNGG | 3 cut(s) | 442, 1069, 1727 |
| BssMI | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| BssNI | GRCGYC | 1 cut(s) | 1739 |
| BssT1I | CCWWGG | 2 cut(s) | 442, 1727 |
| Bst2UI | CCWGG | 2 cut(s) | 1071, 1490 |
| Bst4CI | ACNGT | 1 cut(s) | 1593 |
| Bst6I | CTCTTC | 2 cut(s) | 761, 1313 |
| BstACI | GRCGYC | 1 cut(s) | 1739 |
| BstC8I | GCNNGC | 3 cut(s) | 1379, 1480, 1508 |
| BstDEI | CTNAG | 5 cut(s) | 108, 374, 462, 1158, 1406 |
| BstF5I | GGATG | 3 cut(s) | 1193, 1396, 1644 |
| BstFNI | CGCG | 1 cut(s) | 1506 |
| BstKTI | GATC | 5 cut(s) | 536, 672, 1183, 1246, 1577 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 375, 749, 866, 1378 |
| BstNI | CCWGG | 2 cut(s) | 1071, 1490 |
| BstNSI | RCATGY | 1 cut(s) | 903 |
| BstSCI | CCNGG | 2 cut(s) | 1069, 1488 |
| BstSLI | GKGCMC | 1 cut(s) | 1512 |
| BstUI | CGCG | 1 cut(s) | 1506 |
| BstV2I | GAAGAC | 1 cut(s) | 270 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1937 |
| Bsu15I | ATCGAT | 2 cut(s) | 668, 1434 |
| BsuI | GTATCC | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 77, 1352, 1493 |
| BsuTUI | ATCGAT | 2 cut(s) | 668, 1434 |
| BtgZI | GCGATG | 2 cut(s) | 510, 1322 |
| BtsCI | GGATG | 3 cut(s) | 1193, 1396, 1644 |
| BtsIMutI | CAGTG | 1 cut(s) | 1223 |
| BveI | ACCTGC | 1 cut(s) | 1100 |
| Cac8I | GCNNGC | 3 cut(s) | 1379, 1480, 1508 |
| CciI | TCATGA | 2 cut(s) | 672, 1246 |
| Cfr13I | GGNCC | 4 cut(s) | 76, 1073, 1492, 1702 |
| ClaI | ATCGAT | 2 cut(s) | 668, 1434 |
| CseI | GACGC | 3 cut(s) | 477, 1512, 1747 |
| Csp6I | GTAC | 3 cut(s) | 1124, 1185, 1903 |
| CviAII | CATG | 9 cut(s) | 512, 592, 673, 900, 958, 1226, 1247, 1623, 1800 |
| CviQI | GTAC | 3 cut(s) | 1124, 1185, 1903 |
| DdeI | CTNAG | 5 cut(s) | 108, 374, 462, 1158, 1406 |
| DpnI | GATC | 5 cut(s) | 535, 671, 1182, 1245, 1576 |
| DpnII | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| DraI | TTTAAA | 3 cut(s) | 61, 916, 1876 |
| DraIII | CACNNNGTG | 1 cut(s) | 1359 |
| EaeI | YGGCCR | 1 cut(s) | 1350 |
| Eam1104I | CTCTTC | 2 cut(s) | 761, 1313 |
| EarI | CTCTTC | 2 cut(s) | 761, 1313 |
| Eco130I | CCWWGG | 2 cut(s) | 442, 1727 |
| Eco32I | GATATC | 2 cut(s) | 963, 1139 |
| Eco47I | GGWCC | 2 cut(s) | 1073, 1702 |
| EcoO109I | RGGNCCY | 2 cut(s) | 76, 1492 |
| EcoRII | CCWGG | 2 cut(s) | 1069, 1488 |
| EcoRV | GATATC | 2 cut(s) | 963, 1139 |
| EcoT14I | CCWWGG | 2 cut(s) | 442, 1727 |
| ErhI | CCWWGG | 2 cut(s) | 442, 1727 |
| FaeI | CATG | 9 cut(s) | 515, 595, 676, 903, 961, 1229, 1250, 1626, 1803 |
| FaqI | GGGAC | 2 cut(s) | 1579, 1715 |
| FatI | CATG | 9 cut(s) | 511, 591, 672, 899, 957, 1225, 1246, 1622, 1799 |
| FauI | CCCGC | 2 cut(s) | 1400, 1499 |
| FauNDI | CATATG | 3 cut(s) | 381, 944, 1177 |
| FbaI | TGATCA | 1 cut(s) | 1243 |
| FblI | GTMKAC | 1 cut(s) | 1501 |
| Fnu4HI | GCNGC | 1 cut(s) | 793 |
| FokI | GGATG | 3 cut(s) | 1180, 1383, 1631 |
| Fsp4HI | GCNGC | 1 cut(s) | 793 |
| FspBI | CTAG | 7 cut(s) | 219, 443, 615, 692, 762, 905, 1373 |
| GluI | GCNGC | 1 cut(s) | 793 |
| GsaI | CCCAGC | 1 cut(s) | 940 |
| GsuI | CTGGAG | 2 cut(s) | 325, 870 |
| HaeIII | GGCC | 3 cut(s) | 77, 1352, 1493 |
| HapII | CCGG | 1 cut(s) | 1262 |
| HgaI | GACGC | 3 cut(s) | 477, 1512, 1747 |
| Hin1I | GRCGYC | 1 cut(s) | 1739 |
| Hin1II | CATG | 9 cut(s) | 515, 595, 676, 903, 961, 1229, 1250, 1626, 1803 |
| HincII | GTYRAC | 1 cut(s) | 1502 |
| HindII | GTYRAC | 1 cut(s) | 1502 |
| HpaII | CCGG | 1 cut(s) | 1262 |
| HphI | GGTGA | 4 cut(s) | 678, 1533, 1542, 1747 |
| Hpy166II | GTNNAC | 2 cut(s) | 1502, 1761 |
| Hpy188I | TCNGA | 7 cut(s) | 16, 720, 817, 972, 1105, 1473, 1848 |
| Hpy188III | TCNNGA | 6 cut(s) | 342, 673, 762, 887, 1025, 1247 |
| Hpy8I | GTNNAC | 2 cut(s) | 1502, 1761 |
| Hpy99I | CGWCG | 3 cut(s) | 471, 1503, 1506 |
| HpyAV | CCTTC | 9 cut(s) | 67, 91, 219, 789, 871, 1410, 1540, 1545, 1658 |
| HpyCH4III | ACNGT | 1 cut(s) | 1593 |
| HpyCH4IV | ACGT | 1 cut(s) | 928 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 375, 749, 866, 1378 |
| HpyF3I | CTNAG | 5 cut(s) | 108, 374, 462, 1158, 1406 |
| HpySE526I | ACGT | 1 cut(s) | 928 |
| Hsp92I | GRCGYC | 1 cut(s) | 1739 |
| Hsp92II | CATG | 9 cut(s) | 515, 595, 676, 903, 961, 1229, 1250, 1626, 1803 |
| Ksp22I | TGATCA | 1 cut(s) | 1243 |
| Kzo9I | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| LmnI | GCTCC | 5 cut(s) | 307, 344, 354, 429, 1022 |
| LweI | GCATC | 7 cut(s) | 627, 755, 1096, 1231, 1374, 1427, 1653 |
| MaeI | CTAG | 7 cut(s) | 219, 443, 615, 692, 762, 905, 1373 |
| MaeII | ACGT | 1 cut(s) | 928 |
| MaeIII | GTNAC | 2 cut(s) | 577, 1735 |
| MalI | GATC | 5 cut(s) | 535, 671, 1182, 1245, 1576 |
| MboI | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| MboII | GAAGA | 6 cut(s) | 270, 476, 593, 748, 1133, 1300 |
| MfeI | CAATTG | 2 cut(s) | 1346, 1685 |
| MhlI | GDGCHC | 1 cut(s) | 1512 |
| MlsI | TGGCCA | 1 cut(s) | 1352 |
| MluNI | TGGCCA | 1 cut(s) | 1352 |
| MlyI | GAGTC | 4 cut(s) | 454, 797, 982, 1198 |
| MmeI | TCCRAC | 2 cut(s) | 809, 1451 |
| Mox20I | TGGCCA | 1 cut(s) | 1352 |
| MscI | TGGCCA | 1 cut(s) | 1352 |
| MslI | CAYNNNNRTG | 2 cut(s) | 402, 1104 |
| Msp20I | TGGCCA | 1 cut(s) | 1352 |
| MspI | CCGG | 1 cut(s) | 1262 |
| MspR9I | CCNGG | 2 cut(s) | 1071, 1490 |
| MunI | CAATTG | 2 cut(s) | 1346, 1685 |
| Mva1269I | GAATGC | 4 cut(s) | 351, 572, 661, 1041 |
| MvaI | CCWGG | 2 cut(s) | 1071, 1490 |
| MvnI | CGCG | 1 cut(s) | 1506 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 375, 749, 866, 1378 |
| NdeI | CATATG | 3 cut(s) | 381, 944, 1177 |
| NdeII | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| NlaIII | CATG | 9 cut(s) | 515, 595, 676, 903, 961, 1229, 1250, 1626, 1803 |
| NlaIV | GGNNCC | 3 cut(s) | 1494, 1511, 1703 |
| NmuCI | GTSAC | 1 cut(s) | 1735 |
| NspI | RCATGY | 1 cut(s) | 903 |
| PacI | TTAATTAA | 1 cut(s) | 1923 |
| PagI | TCATGA | 2 cut(s) | 672, 1246 |
| PciI | ACATGT | 1 cut(s) | 899 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 573 |
| PctI | GAATGC | 4 cut(s) | 351, 572, 661, 1041 |
| PfeI | GAWTC | 7 cut(s) | 223, 241, 259, 746, 844, 1154, 1431 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 735, 1133, 1348, 1359 |
| PkrI | GCNGC | 1 cut(s) | 794 |
| PleI | GAGTC | 4 cut(s) | 454, 797, 981, 1198 |
| PpsI | GAGTC | 4 cut(s) | 454, 797, 981, 1198 |
| PscI | ACATGT | 1 cut(s) | 899 |
| PshBI | ATTAAT | 1 cut(s) | 878 |
| Psp1406I | AACGTT | 1 cut(s) | 928 |
| Psp6I | CCWGG | 2 cut(s) | 1069, 1488 |
| PspFI | CCCAGC | 1 cut(s) | 936 |
| PspGI | CCWGG | 2 cut(s) | 1069, 1488 |
| PspN4I | GGNNCC | 3 cut(s) | 1494, 1511, 1703 |
| PspPI | GGNCC | 4 cut(s) | 76, 1073, 1492, 1702 |
| RsaI | GTAC | 3 cut(s) | 1125, 1186, 1904 |
| RsaNI | GTAC | 3 cut(s) | 1124, 1185, 1903 |
| RseI | CAYNNNNRTG | 2 cut(s) | 402, 1104 |
| SalI | GTCGAC | 1 cut(s) | 1500 |
| SatI | GCNGC | 1 cut(s) | 793 |
| Sau3AI | GATC | 5 cut(s) | 533, 669, 1180, 1243, 1574 |
| Sau96I | GGNCC | 4 cut(s) | 76, 1073, 1492, 1702 |
| SchI | GAGTC | 4 cut(s) | 454, 797, 982, 1198 |
| ScrFI | CCNGG | 2 cut(s) | 1071, 1490 |
| SduI | GDGCHC | 1 cut(s) | 1512 |
| SfaNI | GCATC | 7 cut(s) | 627, 755, 1096, 1231, 1374, 1427, 1653 |
| SgrDI | CGTCGACG | 1 cut(s) | 1500 |
| SinI | GGWCC | 2 cut(s) | 1073, 1702 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 402, 1104 |
| SmlI | CTYRAG | 2 cut(s) | 488, 1032 |
| SmoI | CTYRAG | 2 cut(s) | 488, 1032 |
| SsiI | CCGC | 4 cut(s) | 792, 1201, 1393, 1506 |
| SspMI | CTAG | 7 cut(s) | 219, 443, 615, 692, 762, 905, 1373 |
| StyD4I | CCNGG | 2 cut(s) | 1069, 1488 |
| StyI | CCWWGG | 2 cut(s) | 442, 1727 |
| TaaI | ACNGT | 1 cut(s) | 1593 |
| TaiI | ACGT | 1 cut(s) | 931 |
| TaqI | TCGA | 5 cut(s) | 668, 680, 1207, 1434, 1501 |
| TaqII | GACCGA | 1 cut(s) | 1090 |
| TauI | GCSGC | 1 cut(s) | 795 |
| TfiI | GAWTC | 7 cut(s) | 223, 241, 259, 746, 844, 1154, 1431 |
| TscAI | CASTG | 1 cut(s) | 1223 |
| TseFI | GTSAC | 1 cut(s) | 1735 |
| Tsp45I | GTSAC | 1 cut(s) | 1735 |
| TspDTI | ATGAA | 9 cut(s) | 398, 438, 519, 599, 654, 1088, 1182, 1728, 1845 |
| TspGWI | ACGGA | 3 cut(s) | 1186, 1451, 1799 |
| TspRI | CASTG | 1 cut(s) | 1223 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 735, 1133, 1348, 1359 |
| VpaK11BI | GGWCC | 2 cut(s) | 1073, 1702 |
| VspI | ATTAAT | 1 cut(s) | 878 |
| XapI | RAATTY | 4 cut(s) | 1253, 1286, 1792, 1820 |
| XbaI | TCTAGA | 1 cut(s) | 761 |
| XceI | RCATGY | 1 cut(s) | 903 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 736 |
| XmaJI | CCTAGG | 1 cut(s) | 442 |
| XmiI | GTMKAC | 1 cut(s) | 1501 |
| XspI | CTAG | 7 cut(s) | 219, 443, 615, 692, 762, 905, 1373 |