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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 712 |
| Acc36I | ACCTGC | 1 cut(s) | 712 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2176 |
| AccII | CGCG | 1 cut(s) | 223 |
| AciI | CCGC | 2 cut(s) | 584, 2628 |
| AclWI | GGATC | 4 cut(s) | 56, 568, 581, 1678 |
| AdeI | CACNNNGTG | 1 cut(s) | 2176 |
| AfaI | GTAC | 2 cut(s) | 1846, 1978 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 583, 2163, 2176 |
| AflIII | ACRYGT | 3 cut(s) | 906, 1097, 1732 |
| AjnI | CCWGG | 3 cut(s) | 205, 576, 1145 |
| AleI | CACNNNNGTG | 1 cut(s) | 445 |
| AluBI | AGCT | 7 cut(s) | 338, 409, 665, 813, 847, 873, 939 |
| AluI | AGCT | 7 cut(s) | 338, 409, 665, 813, 847, 873, 939 |
| Alw21I | GWGCWC | 1 cut(s) | 849 |
| AlwI | GGATC | 4 cut(s) | 56, 568, 581, 1678 |
| AoxI | GGCC | 1 cut(s) | 1340 |
| ApeKI | GCWGC | 1 cut(s) | 1295 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 158, 190 |
| AseI | ATTAAT | 1 cut(s) | 1713 |
| AspA2I | CCTAGG | 1 cut(s) | 2113 |
| AspS9I | GGNCC | 4 cut(s) | 1340, 1359, 2167, 2625 |
| AsuHPI | GGTGA | 3 cut(s) | 245, 321, 1004 |
| AsuII | TTCGAA | 2 cut(s) | 1174, 1941 |
| AvaII | GGWCC | 3 cut(s) | 1359, 2167, 2625 |
| AvrII | CCTAGG | 1 cut(s) | 2113 |
| AxyI | CCTNAGG | 1 cut(s) | 882 |
| BamHI | GGATCC | 1 cut(s) | 573 |
| BanII | GRGCYC | 1 cut(s) | 849 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2211, 2243 |
| BbsI | GAAGAC | 2 cut(s) | 909, 2111 |
| Bbv12I | GWGCWC | 1 cut(s) | 849 |
| BbvCI | CCTCAGC | 1 cut(s) | 477 |
| BbvI | GCAGC | 1 cut(s) | 1307 |
| BccI | CCATC | 3 cut(s) | 705, 1474, 2569 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 184, 218 |
| BciT130I | CCWGG | 3 cut(s) | 207, 578, 1147 |
| BclI | TGATCA | 1 cut(s) | 1498 |
| BfuAI | ACCTGC | 1 cut(s) | 712 |
| BisI | GCNGC | 1 cut(s) | 1296 |
| BlnI | CCTAGG | 1 cut(s) | 2113 |
| BlsI | GCNGC | 1 cut(s) | 1297 |
| Bme1390I | CCNGG | 3 cut(s) | 207, 578, 1147 |
| Bme18I | GGWCC | 3 cut(s) | 1359, 2167, 2625 |
| BmgT120I | GGNCC | 4 cut(s) | 1340, 1359, 2167, 2625 |
| BmiI | GGNNCC | 3 cut(s) | 575, 1361, 2168 |
| BmrFI | CCNGG | 3 cut(s) | 207, 578, 1147 |
| BmrI | ACTGGG | 1 cut(s) | 1239 |
| BmsI | GCATC | 2 cut(s) | 263, 2265 |
| BmuI | ACTGGG | 1 cut(s) | 1239 |
| BpiI | GAAGAC | 2 cut(s) | 909, 2111 |
| Bpu10I | CCTNAGC | 1 cut(s) | 477 |
| Bpu14I | TTCGAA | 2 cut(s) | 1174, 1941 |
| BpuEI | CTTGAG | 1 cut(s) | 1096 |
| Bsa29I | ATCGAT | 1 cut(s) | 1106 |
| BsaAI | YACGTR | 1 cut(s) | 290 |
| BsaBI | GATNNNNATC | 2 cut(s) | 126, 2463 |
| BsaJI | CCNNGG | 4 cut(s) | 577, 1146, 2113, 2170 |
| BsaWI | WCCGGW | 1 cut(s) | 2103 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 583, 2163, 2176 |
| Bse1I | ACTGG | 1 cut(s) | 1234 |
| Bse21I | CCTNAGG | 1 cut(s) | 882 |
| Bse3DI | GCAATG | 1 cut(s) | 2022 |
| Bse8I | GATNNNNATC | 2 cut(s) | 126, 2463 |
| BseBI | CCWGG | 3 cut(s) | 207, 578, 1147 |
| BseCI | ATCGAT | 1 cut(s) | 1106 |
| BseDI | CCNNGG | 4 cut(s) | 577, 1146, 2113, 2170 |
| BseGI | GGATG | 4 cut(s) | 697, 1466, 2464, 2577 |
| BseJI | GATNNNNATC | 2 cut(s) | 126, 2463 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 583, 2163, 2176 |
| BseMI | GCAATG | 1 cut(s) | 2022 |
| BseMII | CTCAG | 4 cut(s) | 468, 834, 896, 1004 |
| BseNI | ACTGG | 1 cut(s) | 1234 |
| BseRI | GAGGAG | 1 cut(s) | 1665 |
| BseXI | GCAGC | 1 cut(s) | 1307 |
| Bsh1236I | CGCG | 1 cut(s) | 223 |
| BshFI | GGCC | 1 cut(s) | 1342 |
| BshVI | ATCGAT | 1 cut(s) | 1106 |
| BsiHKAI | GWGCWC | 1 cut(s) | 849 |
| BsiSI | CCGG | 2 cut(s) | 1343, 2104 |
| BslFI | GGGAC | 1 cut(s) | 580 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 583, 2163, 2176 |
| BsmFI | GGGAC | 1 cut(s) | 580 |
| BsmI | GAATGC | 2 cut(s) | 173, 1127 |
| BsnI | GGCC | 1 cut(s) | 1342 |
| Bsp119I | TTCGAA | 2 cut(s) | 1174, 1941 |
| Bsp1286I | GDGCHC | 1 cut(s) | 849 |
| Bsp143I | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| BspACI | CCGC | 2 cut(s) | 584, 2628 |
| BspANI | GGCC | 1 cut(s) | 1342 |
| BspCNI | CTCAG | 4 cut(s) | 469, 835, 895, 1003 |
| BspDI | ATCGAT | 1 cut(s) | 1106 |
| BspFNI | CGCG | 1 cut(s) | 223 |
| BspHI | TCATGA | 1 cut(s) | 384 |
| BspLI | GGNNCC | 3 cut(s) | 575, 1361, 2168 |
| BspMI | ACCTGC | 1 cut(s) | 712 |
| BspPI | GGATC | 4 cut(s) | 56, 568, 581, 1678 |
| BspT104I | TTCGAA | 2 cut(s) | 1174, 1941 |
| BsrDI | GCAATG | 1 cut(s) | 2022 |
| BsrI | ACTGG | 1 cut(s) | 1234 |
| BssECI | CCNNGG | 4 cut(s) | 577, 1146, 2113, 2170 |
| BssMI | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| BssT1I | CCWWGG | 1 cut(s) | 2113 |
| Bst2UI | CCWGG | 3 cut(s) | 207, 578, 1147 |
| Bst4CI | ACNGT | 4 cut(s) | 285, 1972, 2174, 2236 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2141 |
| BstBAI | YACGTR | 1 cut(s) | 290 |
| BstBI | TTCGAA | 2 cut(s) | 1174, 1941 |
| BstC8I | GCNNGC | 3 cut(s) | 269, 395, 1865 |
| BstDSI | CCRYGG | 1 cut(s) | 2170 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2161 |
| BstF5I | GGATG | 4 cut(s) | 697, 1466, 2464, 2577 |
| BstFNI | CGCG | 1 cut(s) | 223 |
| BstKTI | GATC | 7 cut(s) | 51, 137, 227, 576, 1110, 1501, 1673 |
| BstMBI | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 780, 2141 |
| BstNI | CCWGG | 3 cut(s) | 207, 578, 1147 |
| BstNSI | RCATGY | 7 cut(s) | 271, 718, 910, 988, 1101, 1736, 2203 |
| BstSCI | CCNGG | 3 cut(s) | 205, 576, 1145 |
| BstSNI | TACGTA | 1 cut(s) | 290 |
| BstUI | CGCG | 1 cut(s) | 223 |
| BstV1I | GCAGC | 1 cut(s) | 1307 |
| BstV2I | GAAGAC | 2 cut(s) | 909, 2111 |
| BstX2I | RGATCY | 2 cut(s) | 573, 1670 |
| BstYI | RGATCY | 2 cut(s) | 573, 1670 |
| Bsu15I | ATCGAT | 1 cut(s) | 1106 |
| Bsu36I | CCTNAGG | 1 cut(s) | 882 |
| BsuRI | GGCC | 1 cut(s) | 1342 |
| BsuTUI | ATCGAT | 1 cut(s) | 1106 |
| BtgI | CCRYGG | 1 cut(s) | 2170 |
| BtsCI | GGATG | 4 cut(s) | 697, 1466, 2464, 2577 |
| BtsIMutI | CAGTG | 3 cut(s) | 1801, 1977, 2241 |
| BveI | ACCTGC | 1 cut(s) | 712 |
| Cac8I | GCNNGC | 3 cut(s) | 269, 395, 1865 |
| CciI | TCATGA | 1 cut(s) | 384 |
| Cfr13I | GGNCC | 4 cut(s) | 1340, 1359, 2167, 2625 |
| ClaI | ATCGAT | 1 cut(s) | 1106 |
| Csp6I | GTAC | 2 cut(s) | 1845, 1977 |
| CviQI | GTAC | 2 cut(s) | 1845, 1977 |
| DpnI | GATC | 7 cut(s) | 50, 136, 226, 575, 1109, 1500, 1672 |
| DpnII | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| DraI | TTTAAA | 6 cut(s) | 1309, 1725, 1777, 1813, 2313, 2326 |
| DraIII | CACNNNGTG | 1 cut(s) | 2176 |
| Ecl136II | GAGCTC | 1 cut(s) | 847 |
| Eco105I | TACGTA | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 1 cut(s) | 2113 |
| Eco24I | GRGCYC | 1 cut(s) | 849 |
| Eco47I | GGWCC | 3 cut(s) | 1359, 2167, 2625 |
| Eco53kI | GAGCTC | 1 cut(s) | 847 |
| Eco81I | CCTNAGG | 1 cut(s) | 882 |
| EcoICRI | GAGCTC | 1 cut(s) | 847 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2161 |
| EcoRI | GAATTC | 5 cut(s) | 325, 996, 1278, 1508, 2252 |
| EcoRII | CCWGG | 3 cut(s) | 205, 576, 1145 |
| EcoT14I | CCWWGG | 1 cut(s) | 2113 |
| EcoT22I | ATGCAT | 2 cut(s) | 269, 716 |
| EcoT38I | GRGCYC | 1 cut(s) | 849 |
| ErhI | CCWWGG | 1 cut(s) | 2113 |
| FaqI | GGGAC | 1 cut(s) | 580 |
| FauNDI | CATATG | 2 cut(s) | 1157, 1599 |
| FbaI | TGATCA | 1 cut(s) | 1498 |
| Fnu4HI | GCNGC | 1 cut(s) | 1296 |
| FokI | GGATG | 4 cut(s) | 684, 1453, 2471, 2584 |
| FriOI | GRGCYC | 1 cut(s) | 849 |
| Fsp4HI | GCNGC | 1 cut(s) | 1296 |
| GluI | GCNGC | 1 cut(s) | 1296 |
| HaeIII | GGCC | 1 cut(s) | 1342 |
| HapII | CCGG | 2 cut(s) | 1343, 2104 |
| HindIII | AAGCTT | 1 cut(s) | 407 |
| HpaII | CCGG | 2 cut(s) | 1343, 2104 |
| HphI | GGTGA | 3 cut(s) | 245, 321, 1004 |
| Hpy166II | GTNNAC | 5 cut(s) | 6, 65, 2170, 2365, 2417 |
| Hpy188I | TCNGA | 3 cut(s) | 457, 993, 1048 |
| Hpy188III | TCNNGA | 6 cut(s) | 385, 603, 1085, 1113, 1205, 1986 |
| Hpy8I | GTNNAC | 5 cut(s) | 6, 65, 2170, 2365, 2417 |
| HpyAV | CCTTC | 4 cut(s) | 431, 502, 609, 664 |
| HpyCH4III | ACNGT | 4 cut(s) | 285, 1972, 2174, 2236 |
| HpyCH4IV | ACGT | 1 cut(s) | 289 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 780, 2141 |
| HpySE526I | ACGT | 1 cut(s) | 289 |
| Ksp22I | TGATCA | 1 cut(s) | 1498 |
| Kzo9I | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| LmnI | GCTCC | 5 cut(s) | 371, 759, 852, 1531, 2208 |
| Lsp1109I | GCAGC | 1 cut(s) | 1307 |
| LweI | GCATC | 2 cut(s) | 263, 2265 |
| MaeII | ACGT | 1 cut(s) | 289 |
| MaeIII | GTNAC | 8 cut(s) | 178, 285, 980, 1225, 1735, 2266, 2279, 2288 |
| MalI | GATC | 7 cut(s) | 50, 136, 226, 575, 1109, 1500, 1672 |
| MboI | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| MboII | GAAGA | 8 cut(s) | 407, 669, 676, 914, 1359, 1431, 1434, 2111 |
| MfeI | CAATTG | 1 cut(s) | 2439 |
| MflI | RGATCY | 2 cut(s) | 573, 1670 |
| MhlI | GDGCHC | 1 cut(s) | 849 |
| MlyI | GAGTC | 4 cut(s) | 395, 1907, 2042, 2365 |
| MmeI | TCCRAC | 3 cut(s) | 393, 515, 1818 |
| Mph1103I | ATGCAT | 2 cut(s) | 269, 716 |
| MslI | CAYNNNNRTG | 6 cut(s) | 167, 308, 445, 715, 1683, 1832 |
| MspI | CCGG | 2 cut(s) | 1343, 2104 |
| MspR9I | CCNGG | 3 cut(s) | 207, 578, 1147 |
| MunI | CAATTG | 1 cut(s) | 2439 |
| Mva1269I | GAATGC | 2 cut(s) | 173, 1127 |
| MvaI | CCWGG | 3 cut(s) | 207, 578, 1147 |
| MvnI | CGCG | 1 cut(s) | 223 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 780, 2141 |
| NdeI | CATATG | 2 cut(s) | 1157, 1599 |
| NdeII | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| NlaIV | GGNNCC | 3 cut(s) | 575, 1361, 2168 |
| NmuCI | GTSAC | 1 cut(s) | 2288 |
| NsiI | ATGCAT | 2 cut(s) | 269, 716 |
| NspI | RCATGY | 7 cut(s) | 271, 718, 910, 988, 1101, 1736, 2203 |
| NspV | TTCGAA | 2 cut(s) | 1174, 1941 |
| OliI | CACNNNNGTG | 1 cut(s) | 445 |
| PaeI | GCATGC | 1 cut(s) | 271 |
| PagI | TCATGA | 1 cut(s) | 384 |
| PaqCI | CACCTGC | 1 cut(s) | 712 |
| PciI | ACATGT | 3 cut(s) | 906, 1097, 1732 |
| PctI | GAATGC | 2 cut(s) | 173, 1127 |
| PfeI | GAWTC | 6 cut(s) | 1151, 1190, 1324, 1346, 2109, 2563 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2176 |
| PkrI | GCNGC | 1 cut(s) | 1297 |
| PleI | GAGTC | 4 cut(s) | 395, 1907, 2042, 2365 |
| PpsI | GAGTC | 4 cut(s) | 395, 1907, 2042, 2365 |
| Ppu21I | YACGTR | 1 cut(s) | 290 |
| PscI | ACATGT | 3 cut(s) | 906, 1097, 1732 |
| PshBI | ATTAAT | 1 cut(s) | 1713 |
| Psp124BI | GAGCTC | 1 cut(s) | 849 |
| Psp6I | CCWGG | 3 cut(s) | 205, 576, 1145 |
| PspGI | CCWGG | 3 cut(s) | 205, 576, 1145 |
| PspN4I | GGNNCC | 3 cut(s) | 575, 1361, 2168 |
| PspPI | GGNCC | 4 cut(s) | 1340, 1359, 2167, 2625 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 36, 68 |
| PsuI | RGATCY | 2 cut(s) | 573, 1670 |
| RsaI | GTAC | 2 cut(s) | 1846, 1978 |
| RsaNI | GTAC | 2 cut(s) | 1845, 1977 |
| RseI | CAYNNNNRTG | 6 cut(s) | 167, 308, 445, 715, 1683, 1832 |
| SacI | GAGCTC | 1 cut(s) | 849 |
| SatI | GCNGC | 1 cut(s) | 1296 |
| Sau3AI | GATC | 7 cut(s) | 48, 134, 224, 573, 1107, 1498, 1670 |
| Sau96I | GGNCC | 4 cut(s) | 1340, 1359, 2167, 2625 |
| SchI | GAGTC | 4 cut(s) | 395, 1907, 2042, 2365 |
| ScrFI | CCNGG | 3 cut(s) | 207, 578, 1147 |
| SduI | GDGCHC | 1 cut(s) | 849 |
| SfaNI | GCATC | 2 cut(s) | 263, 2265 |
| SfuI | TTCGAA | 2 cut(s) | 1174, 1941 |
| SinI | GGWCC | 3 cut(s) | 1359, 2167, 2625 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 167, 308, 445, 715, 1683, 1832 |
| SmlI | CTYRAG | 1 cut(s) | 1111 |
| SmoI | CTYRAG | 1 cut(s) | 1111 |
| SnaBI | TACGTA | 1 cut(s) | 290 |
| SphI | GCATGC | 1 cut(s) | 271 |
| SsiI | CCGC | 2 cut(s) | 584, 2628 |
| SstI | GAGCTC | 1 cut(s) | 849 |
| StyD4I | CCNGG | 3 cut(s) | 205, 576, 1145 |
| StyI | CCWWGG | 1 cut(s) | 2113 |
| TaaI | ACNGT | 4 cut(s) | 285, 1972, 2174, 2236 |
| TaiI | ACGT | 1 cut(s) | 292 |
| TaqI | TCGA | 5 cut(s) | 952, 1106, 1174, 1941, 2605 |
| TfiI | GAWTC | 6 cut(s) | 1151, 1190, 1324, 1346, 2109, 2563 |
| TscAI | CASTG | 3 cut(s) | 1801, 1977, 2241 |
| TseFI | GTSAC | 1 cut(s) | 2288 |
| TseI | GCWGC | 1 cut(s) | 1295 |
| Tsp45I | GTSAC | 1 cut(s) | 2288 |
| TspGWI | ACGGA | 1 cut(s) | 1133 |
| TspRI | CASTG | 3 cut(s) | 1801, 1977, 2241 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2176 |
| VpaK11BI | GGWCC | 3 cut(s) | 1359, 2167, 2625 |
| VspI | ATTAAT | 1 cut(s) | 1713 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2161 |
| XbaI | TCTAGA | 2 cut(s) | 602, 1985 |
| XceI | RCATGY | 7 cut(s) | 271, 718, 910, 988, 1101, 1736, 2203 |
| XmaJI | CCTAGG | 1 cut(s) | 2113 |
| Zsp2I | ATGCAT | 2 cut(s) | 269, 716 |