Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000608

Physical Location & Seq

Genomic Coordinates Forward (+)

13705865 .. 13707010

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g13900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCATTGTTTACCGGCCTAGTTCTCTTCAGCTCACTGCCTATGCTGATACAGACTATGCCGGAGATCCTAATGATCGTCGCTCCACTGGTGGTTATTTTATTTTCCTTGGCGACAACCTTATCTCCTAGAGCTCCAAGAAGCAACGTGGTGTCTCCCGCTCTAGTATTGAAGCTGAATATCGTCAGCTTGCGTACACCGCTACCGCTCTCTCTTGGTATCACACTTTGTTTCACAAGCTTCATTTTCCACTTGCTCCCCCACGCTTCTGGTGCGACAACATTAGTGCCATTTCTGGAGCCTCTAATCCAGTCTATCAACAATGCATGTGGCATGTTGAAGTCGACTATCATTATATTCATGAAAAAGTCACTCACAATGAGATCATTGTTGGCTATGTCTCATATGTTGATCAATTGGCATACCTCCTTACCAAAGGCCTCTCTGCCGCTTGGTTTACTTTCTTGCTCTCCAAACTGCCAGTTCGTGACCTCTCTGTCAGTTTGCAGGGTTGCTCAAATCCTTACAAGATATGCACTCGTTTTTCACACAGATTTTCTGACTACACACCCTACACTAGTTATATGTGAGAAGATTGATGTAAATATGAATTCTAACACTCACATATGTTATATCAAAGAAACTCATATCAATTCCAAACTCCACACTATTGAAACACATAACACTCAAGATAGAAGTCAAAGGGTTGTAACGGGGCTAGGGTATTGGCAAACAAAGAAGGGATATGGAAAACAAAGGTTCTTAAAGAAATATCAACTTTTTGGACCCTTTCTTCAACCATCAACGCTCGTGAGTTCATTCTTACTTATTTTCACTCCTTTTTTTTTCTTTTCTTCTTCTTTTTCTTTTGAATCTCAAAACATACATATAAACGTAAGAACAAACTTTTACTCCCCCACACTCATTTTCTTGCATAATGTAACTCAAAAGGAATTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase RVT_2

Protein Analysis

321

Amino Acids

36.0

Weight (kDa)

9.73

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000608)

Species	Orthologous Gene IDs
malus_domestica	MD01G1168300.v1.1 MD07G1127200.v1.1
prunus_persica	Prupe.5G065800_v2.0.a1
pyrus_communis	pycom01g00450 pycom01g00530 pycom01g00860 pycom01g01270 pycom01g01320 pycom01g01350 pycom01g01370 pycom01g01420 pycom01g01440 pycom01g01750 pycom01g02240 pycom01g02250 pycom01g02980 pycom01g03610 pycom01g04360 pycom03g18640 pycom05g08190 pycom05g08210 pycom05g08250 pycom05g08270 pycom05g22500 pycom11g13900 pycom12424g00150 pycom12426g00120 pycom12426g00140 pycom12426g00190 pycom12426g00200 pycom12426g00480 pycom1256g00170 pycom1256g00250 pycom12659g00080 pycom12659g00170 pycom12659g00200 pycom12661g00070 pycom12661g00120 pycom12g04960 pycom1341g00040 pycom13g23150 pycom13g23290 pycom13g24030 pycom13g24710 pycom13g25450 pycom13g25530 pycom13g25630 pycom13g25650 pycom13g25850 pycom13g25920 pycom13g26130 pycom13g26150 pycom13g26180 pycom13g26190 pycom13g26310 pycom13g27290 pycom13g28010 pycom13g28180 pycom1654g00090 pycom1654g00100 pycom17g16670 pycom17g16980 pycom17g17190 pycom17g17210 pycom17g17290 pycom17g17520 pycom17g17750 pycom17g17770 pycom17g17820 pycom17g18030 pycom17g18060 pycom17g18070 pycom17g18240 pycom280g00030 pycom436g00360 pycom520g00110 pycom520g01100 pycom808g00240 pycom808g00490 pycom808g00610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	496
AccBSI	CCGCTC	2 cut(s)	161, 208
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	4 cut(s)	159, 200, 206, 449
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	610, 953
AcuI	CTGAAG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	172, 340, 674, 797, 872
AhlI	ACTAGT	1 cut(s)	577
AluBI	AGCT	5 cut(s)	33, 134, 175, 189, 240
AluI	AGCT	5 cut(s)	33, 134, 175, 189, 240
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	159, 405
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	2 cut(s)	16, 438
ApoI	RAATTY	2 cut(s)	610, 953
AspS9I	GGNCC	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	1 cut(s)	808
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	159, 405
BcuI	ACTAGT	1 cut(s)	577
BfaI	CTAG	5 cut(s)	20, 129, 164, 578, 719
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	300, 787
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 896, 926
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	93, 310, 481
BseDI	CCNNGG	1 cut(s)	108
BseNI	ACTGG	3 cut(s)	93, 310, 481
BshFI	GGCC	2 cut(s)	18, 440
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	15, 62
BsmAI	GTCTC	2 cut(s)	159, 405
BsnI	GGCC	2 cut(s)	18, 440
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	66, 75, 383, 411
BspACI	CCGC	4 cut(s)	159, 200, 206, 449
BspANI	GGCC	2 cut(s)	18, 440
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	300, 787
BspPI	GGATC	1 cut(s)	61
BsrBI	CCGCTC	2 cut(s)	161, 208
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	93, 310, 481
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	66, 75, 383, 411
BssSI	CACGAG	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	809
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	69, 78, 386, 414
BstMAI	GTCTC	2 cut(s)	159, 405
BstMBI	GATC	4 cut(s)	66, 75, 383, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 272
BstNSI	RCATGY	2 cut(s)	330, 337
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	18, 440
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	35, 86
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	3 cut(s)	327, 334, 361
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	4 cut(s)	68, 77, 385, 413
DpnII	GATC	4 cut(s)	66, 75, 383, 411
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	785
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	134
EcoRI	GAATTC	2 cut(s)	610, 953
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	330, 337, 364
FatI	CATG	3 cut(s)	326, 333, 360
FauI	CCCGC	1 cut(s)	166
FauNDI	CATATG	2 cut(s)	405, 626
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	449
FspBI	CTAG	5 cut(s)	20, 129, 164, 578, 719
GluI	GCNGC	1 cut(s)	449
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	18, 440
HapII	CCGG	2 cut(s)	15, 62
Hin1II	CATG	3 cut(s)	330, 337, 364
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	1 cut(s)	872
HpaII	CCGG	2 cut(s)	15, 62
Hpy166II	GTNNAC	4 cut(s)	12, 197, 345, 458
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	5 cut(s)	296, 361, 487, 689, 811
Hpy8I	GTNNAC	4 cut(s)	12, 197, 345, 458
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	733
HpyCH4IV	ACGT	2 cut(s)	147, 894
HpyCH4V	TGCA	4 cut(s)	326, 507, 536, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 272
HpySE526I	ACGT	2 cut(s)	147, 894
Hsp92II	CATG	3 cut(s)	330, 337, 364
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	4 cut(s)	66, 75, 383, 411
LmnI	GCTCC	4 cut(s)	88, 139, 261, 298
LpnPI	CCDG	8 cut(s)	28, 74, 75, 255, 281, 323, 493, 494
MaeI	CTAG	5 cut(s)	20, 129, 164, 578, 719
MaeII	ACGT	2 cut(s)	147, 894
MaeIII	GTNAC	4 cut(s)	369, 487, 709, 940
MalI	GATC	4 cut(s)	68, 77, 385, 413
MbiI	CCGCTC	2 cut(s)	161, 208
MboI	GATC	4 cut(s)	66, 75, 383, 411
MboII	GAAGA	5 cut(s)	19, 604, 785, 846, 849
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	4 cut(s)	415, 610, 652, 953
MnlI	CCTC	4 cut(s)	312, 436, 451, 502
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	2 cut(s)	764, 961
MspI	CCGG	2 cut(s)	15, 62
MunI	CAATTG	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	199, 272
NdeI	CATATG	2 cut(s)	405, 626
NdeII	GATC	4 cut(s)	66, 75, 383, 411
NlaIII	CATG	3 cut(s)	330, 337, 364
NlaIV	GGNNCC	2 cut(s)	300, 787
NmuCI	GTSAC	2 cut(s)	369, 487
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	2 cut(s)	330, 337
PagI	TCATGA	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	872
PkrI	GCNGC	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	300, 787
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	764, 961
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	4 cut(s)	66, 75, 383, 411
Sau96I	GGNCC	1 cut(s)	785
SduI	GDGCHC	1 cut(s)	136
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	687
SmoI	CTYRAG	1 cut(s)	687
SpeI	ACTAGT	1 cut(s)	577
Sse9I	AATT	4 cut(s)	415, 610, 652, 953
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	4 cut(s)	159, 200, 206, 449
SspMI	CTAG	5 cut(s)	20, 129, 164, 578, 719
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	2 cut(s)	150, 897
TaqI	TCGA	1 cut(s)	344
TasI	AATT	4 cut(s)	415, 610, 652, 953
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	1 cut(s)	872
Tru1I	TTAA	2 cut(s)	764, 961
Tru9I	TTAA	2 cut(s)	764, 961
TscAI	CASTG	2 cut(s)	42, 93
TseFI	GTSAC	2 cut(s)	369, 487
Tsp45I	GTSAC	2 cut(s)	369, 487
TspDTI	ATGAA	6 cut(s)	232, 349, 377, 623, 807, 946
TspRI	CASTG	2 cut(s)	42, 93
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	2 cut(s)	610, 953
XceI	RCATGY	2 cut(s)	330, 337
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	5 cut(s)	20, 129, 164, 578, 719
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.