pycom12426g00480

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
Physical Location & Seq
Forward (+)
332140 .. 332781
642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00480.5

Sequence Viewer

Length: 453 bp
ATGCGAAAATTATACGCACACAAATTAAACCCTCTTTTTGTCAATTGTAGTATAAGGCTTGCTAAAACCTTTGAATTGACTCAAAAACATAAAAACAAAGTTAAAAACGTTCACAAAGACTCAAAAGACTCAAAACAAGTTCAAAAGACTCAAAACTGCCTAAAAACACTAATTAGGCAGTTTCTGACCTTAAACCCAATTTTGGACGAATTTAAGATTATGAACAAGAAAGTAAAGGGGGGTTTTGATTTGACGAAAATTGAATTAACAAAACAAATGATGGATGGATTAGTTAGAGGTCTATTCTCCACACATGACACATTTATATATGAATCGATTCTCCAATTTCTTTTCATTAACTATGATGCTCAACACCCCAAGTTAACCGTGATGCGACAATTCAAATCATTCTCCAATGGTTCTCAACATGAATGCATAGAAGAGATACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.65

Weight (kDa)

9.68

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 108
AcsI RAATTY 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 4 cut(s) 74, 143, 263, 403
AlwNI CAGNNNCTG 1 cut(s) 184
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 336
BccI CCATC 2 cut(s) 274, 278
BmsI GCATC 2 cut(s) 355, 381
Bsa29I ATCGAT 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 335
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 202
BsmI GAATGC 1 cut(s) 437
BspDI ATCGAT 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 335
CviAII CATG 2 cut(s) 314, 428
CviJI RGCY 1 cut(s) 58
CviKI_1 RGCY 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 437
FaeI CATG 2 cut(s) 317, 431
FatI CATG 2 cut(s) 313, 427
FokI GGATG 1 cut(s) 296
Hin1II CATG 2 cut(s) 317, 431
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 6 cut(s) 79, 119, 128, 148, 332, 337
HpaI GTTAAC 1 cut(s) 384
Hpy166II GTNNAC 2 cut(s) 112, 384
Hpy188I TCNGA 1 cut(s) 186
Hpy8I GTNNAC 2 cut(s) 112, 384
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 317, 431
KspAI GTTAAC 1 cut(s) 384
LweI GCATC 2 cut(s) 355, 381
MaeII ACGT 1 cut(s) 108
MboII GAAGA 1 cut(s) 452
MfeI CAATTG 1 cut(s) 43
MlyI GAGTC 4 cut(s) 73, 113, 122, 142
MnlI CCTC 2 cut(s) 42, 290
Mph1103I ATGCAT 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 7 cut(s) 26, 102, 191, 213, 266, 357, 383
MunI CAATTG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 437
NlaIII CATG 2 cut(s) 317, 431
NsiI ATGCAT 1 cut(s) 437
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 2 cut(s) 332, 337
PleI GAGTC 4 cut(s) 73, 113, 122, 142
PpsI GAGTC 4 cut(s) 73, 113, 122, 142
Psp1406I AACGTT 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 184
SaqAI TTAA 7 cut(s) 26, 102, 191, 213, 266, 357, 383
SchI GAGTC 4 cut(s) 73, 113, 122, 142
SetI ASST 4 cut(s) 71, 111, 191, 301
SfaNI GCATC 2 cut(s) 355, 381
SgeI CNNG 7 cut(s) 71, 149, 238, 326, 391, 400, 440
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 335
TfiI GAWTC 2 cut(s) 332, 337
Tru1I TTAA 7 cut(s) 26, 102, 191, 213, 266, 357, 383
Tru9I TTAA 7 cut(s) 26, 102, 191, 213, 266, 357, 383
TspDTI ATGAA 4 cut(s) 236, 343, 345, 444
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.