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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 80, 173, 546 |
| AccII | CGCG | 1 cut(s) | 1519 |
| AciI | CCGC | 8 cut(s) | 864, 948, 1048, 1174, 1242, 1350, 1412, 1484 |
| AclWI | GGATC | 1 cut(s) | 110 |
| AcsI | RAATTY | 6 cut(s) | 450, 610, 850, 1451, 1639, 1655 |
| AcvI | CACGTG | 1 cut(s) | 1532 |
| AfaI | GTAC | 1 cut(s) | 787 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 625, 657, 790, 1110, 1490 |
| AflII | CTTAAG | 1 cut(s) | 671 |
| AflIII | ACRYGT | 1 cut(s) | 41 |
| AjnI | CCWGG | 1 cut(s) | 98 |
| AluBI | AGCT | 6 cut(s) | 227, 510, 736, 919, 1158, 1511 |
| AluI | AGCT | 6 cut(s) | 227, 510, 736, 919, 1158, 1511 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 1 cut(s) | 110 |
| AoxI | GGCC | 2 cut(s) | 549, 1131 |
| ApeKI | GCWGC | 5 cut(s) | 950, 1068, 1244, 1352, 1486 |
| ApoI | RAATTY | 6 cut(s) | 450, 610, 850, 1451, 1639, 1655 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 374, 406 |
| AspA2I | CCTAGG | 1 cut(s) | 808 |
| AspLEI | GCGC | 1 cut(s) | 1521 |
| AspS9I | GGNCC | 2 cut(s) | 967, 1132 |
| AsuHPI | GGTGA | 6 cut(s) | 458, 1142, 1194, 1214, 1598, 1664 |
| AsuII | TTCGAA | 1 cut(s) | 1592 |
| AsuNHI | GCTAGC | 1 cut(s) | 919 |
| AvaII | GGWCC | 1 cut(s) | 967 |
| AvrII | CCTAGG | 1 cut(s) | 808 |
| BauI | CACGAG | 1 cut(s) | 517 |
| BbrPI | CACGTG | 1 cut(s) | 1532 |
| BbsI | GAAGAC | 1 cut(s) | 1269 |
| BbvI | GCAGC | 5 cut(s) | 962, 1080, 1256, 1364, 1498 |
| BccI | CCATC | 7 cut(s) | 1067, 1192, 1207, 1311, 1331, 1364, 1401 |
| BceAI | ACGGC | 4 cut(s) | 768, 908, 1112, 1258 |
| BciT130I | CCWGG | 1 cut(s) | 100 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 7 cut(s) | 722, 809, 860, 920, 1155, 1551, 1580 |
| BfrI | CTTAAG | 1 cut(s) | 671 |
| BlnI | CCTAGG | 1 cut(s) | 808 |
| Bme1390I | CCNGG | 1 cut(s) | 100 |
| Bme18I | GGWCC | 1 cut(s) | 967 |
| BmgT120I | GGNCC | 2 cut(s) | 967, 1132 |
| BmiI | GGNNCC | 1 cut(s) | 1134 |
| BmrFI | CCNGG | 1 cut(s) | 100 |
| BmsI | GCATC | 1 cut(s) | 558 |
| BmtI | GCTAGC | 1 cut(s) | 923 |
| BpiI | GAAGAC | 1 cut(s) | 1269 |
| Bpu10I | CCTNAGC | 1 cut(s) | 915 |
| Bpu14I | TTCGAA | 1 cut(s) | 1592 |
| BpuEI | CTTGAG | 1 cut(s) | 1189 |
| Bsa29I | ATCGAT | 1 cut(s) | 1680 |
| BsaAI | YACGTR | 1 cut(s) | 1532 |
| BsaJI | CCNNGG | 2 cut(s) | 808, 1128 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1180, 1210, 1374, 1404 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 625, 657, 790, 1110, 1490 |
| Bse1I | ACTGG | 1 cut(s) | 276 |
| BseBI | CCWGG | 1 cut(s) | 100 |
| BseCI | ATCGAT | 1 cut(s) | 1680 |
| BseDI | CCNNGG | 2 cut(s) | 808, 1128 |
| BseGI | GGATG | 5 cut(s) | 220, 1077, 1184, 1356, 1465 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 625, 657, 790, 1110, 1490 |
| BseMII | CTCAG | 1 cut(s) | 333 |
| BseNI | ACTGG | 1 cut(s) | 276 |
| BseRI | GAGGAG | 1 cut(s) | 1521 |
| BseXI | GCAGC | 5 cut(s) | 962, 1080, 1256, 1364, 1498 |
| Bsh1236I | CGCG | 1 cut(s) | 1519 |
| BshFI | GGCC | 2 cut(s) | 551, 1133 |
| BshVI | ATCGAT | 1 cut(s) | 1680 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 625, 657, 790, 1110, 1490 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmI | GAATGC | 1 cut(s) | 118 |
| BsnI | GGCC | 2 cut(s) | 551, 1133 |
| Bsp119I | TTCGAA | 1 cut(s) | 1592 |
| Bsp143I | GATC | 3 cut(s) | 102, 350, 1677 |
| BspACI | CCGC | 8 cut(s) | 864, 948, 1048, 1174, 1242, 1350, 1412, 1484 |
| BspANI | GGCC | 2 cut(s) | 551, 1133 |
| BspCNI | CTCAG | 1 cut(s) | 332 |
| BspDI | ATCGAT | 1 cut(s) | 1680 |
| BspFNI | CGCG | 1 cut(s) | 1519 |
| BspHI | TCATGA | 1 cut(s) | 1644 |
| BspLI | GGNNCC | 1 cut(s) | 1134 |
| BspOI | GCTAGC | 1 cut(s) | 923 |
| BspPI | GGATC | 1 cut(s) | 110 |
| BspT104I | TTCGAA | 1 cut(s) | 1592 |
| BspTI | CTTAAG | 1 cut(s) | 671 |
| BsrI | ACTGG | 1 cut(s) | 276 |
| BssECI | CCNNGG | 2 cut(s) | 808, 1128 |
| BssMI | GATC | 3 cut(s) | 102, 350, 1677 |
| BssSI | CACGAG | 1 cut(s) | 517 |
| BssT1I | CCWWGG | 1 cut(s) | 808 |
| Bst2BI | CACGAG | 1 cut(s) | 517 |
| Bst2UI | CCWGG | 1 cut(s) | 100 |
| Bst6I | CTCTTC | 1 cut(s) | 1491 |
| BstAFI | CTTAAG | 1 cut(s) | 671 |
| BstBAI | YACGTR | 1 cut(s) | 1532 |
| BstBI | TTCGAA | 1 cut(s) | 1592 |
| BstC8I | GCNNGC | 2 cut(s) | 921, 1610 |
| BstDEI | CTNAG | 2 cut(s) | 319, 915 |
| BstDSI | CCRYGG | 1 cut(s) | 1128 |
| BstEII | GGTNACC | 1 cut(s) | 688 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 655 |
| BstF5I | GGATG | 5 cut(s) | 220, 1077, 1184, 1356, 1465 |
| BstFNI | CGCG | 1 cut(s) | 1519 |
| BstHHI | GCGC | 1 cut(s) | 1521 |
| BstKTI | GATC | 3 cut(s) | 105, 353, 1680 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 3 cut(s) | 102, 350, 1677 |
| BstNI | CCWGG | 1 cut(s) | 100 |
| BstNSI | RCATGY | 1 cut(s) | 45 |
| BstPI | GGTNACC | 1 cut(s) | 688 |
| BstSCI | CCNGG | 1 cut(s) | 98 |
| BstUI | CGCG | 1 cut(s) | 1519 |
| BstV1I | GCAGC | 5 cut(s) | 962, 1080, 1256, 1364, 1498 |
| BstV2I | GAAGAC | 1 cut(s) | 1269 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 964 |
| Bsu15I | ATCGAT | 1 cut(s) | 1680 |
| BsuRI | GGCC | 2 cut(s) | 551, 1133 |
| BsuTUI | ATCGAT | 1 cut(s) | 1680 |
| BtgI | CCRYGG | 1 cut(s) | 1128 |
| BtsCI | GGATG | 5 cut(s) | 220, 1077, 1184, 1356, 1465 |
| Cac8I | GCNNGC | 2 cut(s) | 921, 1610 |
| CciI | TCATGA | 1 cut(s) | 1644 |
| CfoI | GCGC | 1 cut(s) | 1521 |
| Cfr13I | GGNCC | 2 cut(s) | 967, 1132 |
| ClaI | ATCGAT | 1 cut(s) | 1680 |
| CseI | GACGC | 1 cut(s) | 1525 |
| Csp6I | GTAC | 1 cut(s) | 786 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1513, 1548 |
| CviAII | CATG | 8 cut(s) | 42, 248, 329, 495, 755, 1110, 1599, 1645 |
| CviQI | GTAC | 1 cut(s) | 786 |
| DdeI | CTNAG | 2 cut(s) | 319, 915 |
| DpnI | GATC | 3 cut(s) | 104, 352, 1679 |
| DpnII | GATC | 3 cut(s) | 102, 350, 1677 |
| Eam1104I | CTCTTC | 1 cut(s) | 1491 |
| EarI | CTCTTC | 1 cut(s) | 1491 |
| Eco130I | CCWWGG | 1 cut(s) | 808 |
| Eco47I | GGWCC | 1 cut(s) | 967 |
| Eco72I | CACGTG | 1 cut(s) | 1532 |
| Eco91I | GGTNACC | 1 cut(s) | 688 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 655 |
| EcoO65I | GGTNACC | 1 cut(s) | 688 |
| EcoRI | GAATTC | 2 cut(s) | 610, 1655 |
| EcoRII | CCWGG | 1 cut(s) | 98 |
| EcoT14I | CCWWGG | 1 cut(s) | 808 |
| ErhI | CCWWGG | 1 cut(s) | 808 |
| FaeI | CATG | 8 cut(s) | 45, 251, 332, 498, 758, 1113, 1602, 1648 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 654, 686, 1495, 1527 |
| FatI | CATG | 8 cut(s) | 41, 247, 328, 494, 754, 1109, 1598, 1644 |
| FauNDI | CATATG | 1 cut(s) | 256 |
| FokI | GGATG | 5 cut(s) | 227, 1064, 1171, 1343, 1452 |
| FspBI | CTAG | 7 cut(s) | 722, 809, 860, 920, 1155, 1551, 1580 |
| GlaI | GCGC | 1 cut(s) | 1520 |
| HaeIII | GGCC | 2 cut(s) | 551, 1133 |
| HgaI | GACGC | 1 cut(s) | 1525 |
| HhaI | GCGC | 1 cut(s) | 1521 |
| Hin1II | CATG | 8 cut(s) | 45, 251, 332, 498, 758, 1113, 1602, 1648 |
| Hin6I | GCGC | 1 cut(s) | 1519 |
| HinP1I | GCGC | 1 cut(s) | 1519 |
| HinfI | GANTC | 9 cut(s) | 52, 65, 234, 629, 944, 1006, 1093, 1536, 1589 |
| HphI | GGTGA | 6 cut(s) | 458, 1142, 1194, 1214, 1598, 1664 |
| Hpy188I | TCNGA | 3 cut(s) | 107, 322, 541 |
| Hpy188III | TCNNGA | 2 cut(s) | 8, 1645 |
| Hpy99I | CGWCG | 1 cut(s) | 1519 |
| HpyAV | CCTTC | 4 cut(s) | 784, 983, 1320, 1396 |
| HpyCH4IV | ACGT | 2 cut(s) | 709, 1531 |
| HpyCH4V | TGCA | 7 cut(s) | 141, 260, 561, 571, 817, 1109, 1612 |
| HpyF3I | CTNAG | 2 cut(s) | 319, 915 |
| HpySE526I | ACGT | 2 cut(s) | 709, 1531 |
| Hsp92II | CATG | 8 cut(s) | 45, 251, 332, 498, 758, 1113, 1602, 1648 |
| HspAI | GCGC | 1 cut(s) | 1519 |
| Kzo9I | GATC | 3 cut(s) | 102, 350, 1677 |
| LmnI | GCTCC | 4 cut(s) | 485, 588, 741, 1508 |
| LpnPI | CCDG | 7 cut(s) | 85, 112, 289, 1251, 1332, 1383, 1460 |
| Lsp1109I | GCAGC | 5 cut(s) | 962, 1080, 1256, 1364, 1498 |
| LweI | GCATC | 1 cut(s) | 558 |
| MaeI | CTAG | 7 cut(s) | 722, 809, 860, 920, 1155, 1551, 1580 |
| MaeII | ACGT | 2 cut(s) | 709, 1531 |
| MaeIII | GTNAC | 3 cut(s) | 394, 688, 925 |
| MalI | GATC | 3 cut(s) | 104, 352, 1679 |
| MboI | GATC | 3 cut(s) | 102, 350, 1677 |
| MboII | GAAGA | 8 cut(s) | 229, 276, 577, 761, 1031, 1269, 1318, 1508 |
| MfeI | CAATTG | 1 cut(s) | 142 |
| MmeI | TCCRAC | 2 cut(s) | 1365, 1616 |
| MslI | CAYNNNNRTG | 3 cut(s) | 60, 493, 1603 |
| MspCI | CTTAAG | 1 cut(s) | 671 |
| MspR9I | CCNGG | 1 cut(s) | 100 |
| MunI | CAATTG | 1 cut(s) | 142 |
| Mva1269I | GAATGC | 1 cut(s) | 118 |
| MvaI | CCWGG | 1 cut(s) | 100 |
| MvnI | CGCG | 1 cut(s) | 1519 |
| NdeI | CATATG | 1 cut(s) | 256 |
| NdeII | GATC | 3 cut(s) | 102, 350, 1677 |
| NheI | GCTAGC | 1 cut(s) | 919 |
| NlaIII | CATG | 8 cut(s) | 45, 251, 332, 498, 758, 1113, 1602, 1648 |
| NlaIV | GGNNCC | 1 cut(s) | 1134 |
| NmuCI | GTSAC | 1 cut(s) | 925 |
| NspI | RCATGY | 1 cut(s) | 45 |
| NspV | TTCGAA | 1 cut(s) | 1592 |
| PagI | TCATGA | 1 cut(s) | 1644 |
| PciI | ACATGT | 1 cut(s) | 41 |
| PctI | GAATGC | 1 cut(s) | 118 |
| PfeI | GAWTC | 9 cut(s) | 52, 65, 234, 629, 944, 1006, 1093, 1536, 1589 |
| PmaCI | CACGTG | 1 cut(s) | 1532 |
| PmlI | CACGTG | 1 cut(s) | 1532 |
| Ppu21I | YACGTR | 1 cut(s) | 1532 |
| PscI | ACATGT | 1 cut(s) | 41 |
| PsiI | TTATAA | 3 cut(s) | 80, 173, 546 |
| Psp6I | CCWGG | 1 cut(s) | 98 |
| PspCI | CACGTG | 1 cut(s) | 1532 |
| PspEI | GGTNACC | 1 cut(s) | 688 |
| PspGI | CCWGG | 1 cut(s) | 98 |
| PspN4I | GGNNCC | 1 cut(s) | 1134 |
| PspPI | GGNCC | 2 cut(s) | 967, 1132 |
| RsaI | GTAC | 1 cut(s) | 787 |
| RsaNI | GTAC | 1 cut(s) | 786 |
| RseI | CAYNNNNRTG | 3 cut(s) | 60, 493, 1603 |
| Sau3AI | GATC | 3 cut(s) | 102, 350, 1677 |
| Sau96I | GGNCC | 2 cut(s) | 967, 1132 |
| ScrFI | CCNGG | 1 cut(s) | 100 |
| SfaNI | GCATC | 1 cut(s) | 558 |
| SfuI | TTCGAA | 1 cut(s) | 1592 |
| SinI | GGWCC | 1 cut(s) | 967 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 60, 493, 1603 |
| SmlI | CTYRAG | 2 cut(s) | 671, 1168 |
| SmoI | CTYRAG | 2 cut(s) | 671, 1168 |
| SsiI | CCGC | 8 cut(s) | 864, 948, 1048, 1174, 1242, 1350, 1412, 1484 |
| SspMI | CTAG | 7 cut(s) | 722, 809, 860, 920, 1155, 1551, 1580 |
| StyD4I | CCNGG | 1 cut(s) | 98 |
| StyI | CCWWGG | 1 cut(s) | 808 |
| TaiI | ACGT | 2 cut(s) | 712, 1534 |
| TaqI | TCGA | 4 cut(s) | 1004, 1514, 1592, 1680 |
| TauI | GCSGC | 7 cut(s) | 866, 1050, 1176, 1244, 1352, 1414, 1486 |
| TfiI | GAWTC | 9 cut(s) | 52, 65, 234, 629, 944, 1006, 1093, 1536, 1589 |
| TseFI | GTSAC | 1 cut(s) | 925 |
| TseI | GCWGC | 5 cut(s) | 950, 1068, 1244, 1352, 1486 |
| Tsp45I | GTSAC | 1 cut(s) | 925 |
| TspGWI | ACGGA | 3 cut(s) | 702, 970, 1287 |
| Vha464I | CTTAAG | 1 cut(s) | 671 |
| VpaK11BI | GGWCC | 1 cut(s) | 967 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 655 |
| XapI | RAATTY | 6 cut(s) | 450, 610, 850, 1451, 1639, 1655 |
| XceI | RCATGY | 1 cut(s) | 45 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 961 |
| XmaJI | CCTAGG | 1 cut(s) | 808 |
| XspI | CTAG | 7 cut(s) | 722, 809, 860, 920, 1155, 1551, 1580 |