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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3132 |
| Acc16I | TGCGCA | 1 cut(s) | 1800 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2949 |
| AccBSI | CCGCTC | 1 cut(s) | 3013 |
| AccI | GTMKAC | 1 cut(s) | 2192 |
| AccII | CGCG | 3 cut(s) | 1269, 2636, 3044 |
| AciI | CCGC | 8 cut(s) | 548, 1655, 1756, 2263, 2596, 2599, 2877, 3013 |
| AclI | AACGTT | 1 cut(s) | 506 |
| AclWI | GGATC | 4 cut(s) | 2254, 2389, 2402, 2879 |
| AcoI | YGGCCR | 5 cut(s) | 1349, 2016, 2535, 2678, 2951 |
| AcsI | RAATTY | 7 cut(s) | 119, 304, 757, 1773, 2173, 2333, 2587 |
| AcuI | CTGAAG | 4 cut(s) | 1412, 1719, 1763, 2739 |
| AcvI | CACGTG | 1 cut(s) | 1263 |
| AcyI | GRCGYC | 1 cut(s) | 2843 |
| AfaI | GTAC | 9 cut(s) | 146, 1512, 2556, 2779, 2790, 2863, 2920, 3106, 3165 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 378, 797, 2949, 2974 |
| AflIII | ACRYGT | 2 cut(s) | 2275, 2885 |
| AhlI | ACTAGT | 1 cut(s) | 2557 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 215, 247 |
| AluBI | AGCT | 7 cut(s) | 1107, 1291, 2631, 2675, 2738, 2849, 2958 |
| AluI | AGCT | 7 cut(s) | 1107, 1291, 2631, 2675, 2738, 2849, 2958 |
| Alw21I | GWGCWC | 1 cut(s) | 1654 |
| Alw26I | GTCTC | 3 cut(s) | 1183, 1482, 2199 |
| AlwI | GGATC | 4 cut(s) | 2254, 2389, 2402, 2879 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2738, 2747 |
| Ama87I | CYCGRG | 1 cut(s) | 1384 |
| ApeKI | GCWGC | 9 cut(s) | 545, 1402, 2083, 2213, 2631, 2672, 2735, 2738, 2849 |
| ApoI | RAATTY | 7 cut(s) | 119, 304, 757, 1773, 2173, 2333, 2587 |
| AseI | ATTAAT | 1 cut(s) | 2445 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 643, 1704 |
| AspLEI | GCGC | 5 cut(s) | 1269, 1271, 1801, 2636, 2807 |
| AspS9I | GGNCC | 6 cut(s) | 800, 1171, 1214, 1910, 2940, 2961 |
| AsuC2I | CCSGG | 1 cut(s) | 2929 |
| AsuHPI | GGTGA | 5 cut(s) | 578, 613, 782, 1700, 2491 |
| AsuII | TTCGAA | 2 cut(s) | 2379, 2753 |
| AvaI | CYCGRG | 1 cut(s) | 1384 |
| AvaII | GGWCC | 4 cut(s) | 800, 1171, 1214, 1910 |
| BalI | TGGCCA | 3 cut(s) | 2018, 2680, 2953 |
| BamHI | GGATCC | 1 cut(s) | 2394 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 892, 924, 1914, 1946 |
| BbrPI | CACGTG | 1 cut(s) | 1263 |
| BbsI | GAAGAC | 1 cut(s) | 969 |
| Bbv12I | GWGCWC | 1 cut(s) | 1654 |
| BbvI | GCAGC | 9 cut(s) | 532, 1389, 2070, 2200, 2618, 2684, 2725, 2747, 2836 |
| BccI | CCATC | 6 cut(s) | 570, 602, 1529, 1949, 2616, 2943 |
| BceAI | ACGGC | 4 cut(s) | 809, 1364, 1689, 2276 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1423, 1457, 1926, 1960, 3034, 3068 |
| BcnI | CCSGG | 1 cut(s) | 2929 |
| BcoDI | GTCTC | 3 cut(s) | 1183, 1482, 2199 |
| BcuI | ACTAGT | 1 cut(s) | 2557 |
| BfaI | CTAG | 8 cut(s) | 138, 419, 918, 1205, 1406, 1907, 2558, 2570 |
| BfmI | CTRYAG | 2 cut(s) | 2200, 2739 |
| BfoI | RGCGCY | 1 cut(s) | 2808 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1264, 1559 |
| BglII | AGATCT | 1 cut(s) | 2639 |
| BmcAI | AGTACT | 3 cut(s) | 1512, 2556, 2790 |
| Bme1390I | CCNGG | 1 cut(s) | 2929 |
| Bme18I | GGWCC | 4 cut(s) | 800, 1171, 1214, 1910 |
| BmeT110I | CYCGRG | 1 cut(s) | 1384 |
| BmgT120I | GGNCC | 6 cut(s) | 800, 1171, 1214, 1910, 2940, 2961 |
| BmiI | GGNNCC | 5 cut(s) | 1215, 1216, 1912, 2396, 3062 |
| BmrFI | CCNGG | 1 cut(s) | 2929 |
| BmrI | ACTGGG | 1 cut(s) | 1220 |
| BmsI | GCATC | 2 cut(s) | 1956, 2078 |
| BmuI | ACTGGG | 1 cut(s) | 1220 |
| BpiI | GAAGAC | 1 cut(s) | 969 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1073 |
| Bpu14I | TTCGAA | 2 cut(s) | 2379, 2753 |
| BpuMI | CCSGG | 1 cut(s) | 2929 |
| Bsa29I | ATCGAT | 1 cut(s) | 1840 |
| BsaAI | YACGTR | 1 cut(s) | 1263 |
| BsaHI | GRCGYC | 1 cut(s) | 2843 |
| BsaI | GGTCTC | 1 cut(s) | 1482 |
| BsaJI | CCNNGG | 4 cut(s) | 693, 791, 875, 1352 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 585, 615, 2179, 2209 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 378, 797, 2949, 2974 |
| Bse118I | RCCGGY | 2 cut(s) | 2265, 2533 |
| Bse1I | ACTGG | 6 cut(s) | 186, 1215, 1441, 1711, 2785, 2942 |
| Bse3DI | GCAATG | 2 cut(s) | 1879, 2919 |
| BseCI | ATCGAT | 1 cut(s) | 1840 |
| BseDI | CCNNGG | 4 cut(s) | 693, 791, 875, 1352 |
| BseGI | GGATG | 6 cut(s) | 208, 581, 613, 1949, 2619, 2924 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 378, 797, 2949, 2974 |
| BseMI | GCAATG | 2 cut(s) | 1879, 2919 |
| BseMII | CTCAG | 3 cut(s) | 1403, 2361, 2445 |
| BseNI | ACTGG | 6 cut(s) | 186, 1215, 1441, 1711, 2785, 2942 |
| BsePI | GCGCGC | 1 cut(s) | 1267 |
| BseX3I | CGGCCG | 1 cut(s) | 1349 |
| BseXI | GCAGC | 9 cut(s) | 532, 1389, 2070, 2200, 2618, 2684, 2725, 2747, 2836 |
| BseYI | CCCAGC | 1 cut(s) | 2958 |
| BsgI | GTGCAG | 1 cut(s) | 3074 |
| Bsh1236I | CGCG | 3 cut(s) | 1269, 2636, 3044 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1352, 1840, 2650 |
| BshVI | ATCGAT | 1 cut(s) | 1840 |
| BsiEI | CGRYCG | 3 cut(s) | 1352, 1840, 2650 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1654 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1384 |
| BsiSI | CCGG | 3 cut(s) | 2266, 2534, 2929 |
| BslFI | GGGAC | 3 cut(s) | 1200, 2896, 2920 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 378, 797, 2949, 2974 |
| BsmAI | GTCTC | 3 cut(s) | 1183, 1482, 2199 |
| BsmFI | GGGAC | 3 cut(s) | 1200, 2896, 2920 |
| BsmI | GAATGC | 3 cut(s) | 394, 502, 3035 |
| Bso31I | GGTCTC | 1 cut(s) | 1482 |
| BsoBI | CYCGRG | 1 cut(s) | 1384 |
| Bsp119I | TTCGAA | 2 cut(s) | 2379, 2753 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1654 |
| Bsp1407I | TGTACA | 1 cut(s) | 3163 |
| Bsp68I | TCGCGA | 1 cut(s) | 3044 |
| BspACI | CCGC | 8 cut(s) | 548, 1655, 1756, 2263, 2596, 2599, 2877, 3013 |
| BspCNI | CTCAG | 3 cut(s) | 1404, 2362, 2444 |
| BspDI | ATCGAT | 1 cut(s) | 1840 |
| BspFNI | CGCG | 3 cut(s) | 1269, 2636, 3044 |
| BspHI | TCATGA | 2 cut(s) | 1188, 1960 |
| BspLI | GGNNCC | 5 cut(s) | 1215, 1216, 1912, 2396, 3062 |
| BspMAI | CTGCAG | 1 cut(s) | 2743 |
| BspPI | GGATC | 4 cut(s) | 2254, 2389, 2402, 2879 |
| BspT104I | TTCGAA | 2 cut(s) | 2379, 2753 |
| BspTNI | GGTCTC | 1 cut(s) | 1482 |
| BsrBI | CCGCTC | 1 cut(s) | 3013 |
| BsrDI | GCAATG | 2 cut(s) | 1879, 2919 |
| BsrFI | RCCGGY | 2 cut(s) | 2265, 2533 |
| BsrGI | TGTACA | 1 cut(s) | 3163 |
| BsrI | ACTGG | 6 cut(s) | 186, 1215, 1441, 1711, 2785, 2942 |
| BssAI | RCCGGY | 2 cut(s) | 2265, 2533 |
| BssECI | CCNNGG | 4 cut(s) | 693, 791, 875, 1352 |
| BssHII | GCGCGC | 1 cut(s) | 1267 |
| BssNAI | GTATAC | 1 cut(s) | 2193 |
| BssNI | GRCGYC | 1 cut(s) | 2843 |
| BssT1I | CCWWGG | 2 cut(s) | 693, 875 |
| Bst1107I | GTATAC | 1 cut(s) | 2193 |
| Bst4CI | ACNGT | 7 cut(s) | 381, 1175, 1681, 1725, 2107, 2474, 2977 |
| Bst6I | CTCTTC | 1 cut(s) | 534 |
| BstACI | GRCGYC | 1 cut(s) | 2843 |
| BstAUI | TGTACA | 1 cut(s) | 3163 |
| BstBAI | YACGTR | 1 cut(s) | 1263 |
| BstBI | TTCGAA | 2 cut(s) | 2379, 2753 |
| BstDEI | CTNAG | 5 cut(s) | 1073, 1412, 2370, 2407, 2431 |
| BstDSI | CCRYGG | 1 cut(s) | 791 |
| BstF5I | GGATG | 6 cut(s) | 208, 581, 613, 1949, 2619, 2924 |
| BstFNI | CGCG | 3 cut(s) | 1269, 2636, 3044 |
| BstH2I | RGCGCY | 1 cut(s) | 2808 |
| BstHHI | GCGC | 5 cut(s) | 1269, 1271, 1801, 2636, 2807 |
| BstMAI | GTCTC | 3 cut(s) | 1183, 1482, 2199 |
| BstMCI | CGRYCG | 3 cut(s) | 1352, 1840, 2650 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 819, 1074, 1264, 1348, 1559, 2075, 2573, 2813 |
| BstNSI | RCATGY | 1 cut(s) | 2889 |
| BstSCI | CCNGG | 1 cut(s) | 2927 |
| BstSFI | CTRYAG | 2 cut(s) | 2200, 2739 |
| BstUI | CGCG | 3 cut(s) | 1269, 2636, 3044 |
| BstV1I | GCAGC | 9 cut(s) | 532, 1389, 2070, 2200, 2618, 2684, 2725, 2747, 2836 |
| BstV2I | GAAGAC | 1 cut(s) | 969 |
| BstX2I | RGATCY | 2 cut(s) | 2394, 2639 |
| BstYI | RGATCY | 2 cut(s) | 2394, 2639 |
| BstZ17I | GTATAC | 1 cut(s) | 2193 |
| BstZI | CGGCCG | 1 cut(s) | 1349 |
| Bsu15I | ATCGAT | 1 cut(s) | 1840 |
| BsuTUI | ATCGAT | 1 cut(s) | 1840 |
| BtgI | CCRYGG | 1 cut(s) | 791 |
| BtsCI | GGATG | 6 cut(s) | 208, 581, 613, 1949, 2619, 2924 |
| BtsI | GCAGTG | 2 cut(s) | 1632, 3062 |
| BtsIMutI | CAGTG | 6 cut(s) | 1208, 1434, 1632, 1686, 1730, 3062 |
| BtuMI | TCGCGA | 1 cut(s) | 3044 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2738, 2747 |
| CciI | TCATGA | 2 cut(s) | 1188, 1960 |
| CfoI | GCGC | 5 cut(s) | 1269, 1271, 1801, 2636, 2807 |
| Cfr10I | RCCGGY | 2 cut(s) | 2265, 2533 |
| Cfr13I | GGNCC | 6 cut(s) | 800, 1171, 1214, 1910, 2940, 2961 |
| ClaI | ATCGAT | 1 cut(s) | 1840 |
| CpoI | CGGWCCG | 1 cut(s) | 1171 |
| CseI | GACGC | 2 cut(s) | 1631, 2851 |
| Csp6I | GTAC | 9 cut(s) | 145, 1511, 2555, 2778, 2789, 2862, 2919, 3105, 3164 |
| CspI | CGGWCCG | 1 cut(s) | 1171 |
| CviQI | GTAC | 9 cut(s) | 145, 1511, 2555, 2778, 2789, 2862, 2919, 3105, 3164 |
| DdeI | CTNAG | 5 cut(s) | 1073, 1412, 2370, 2407, 2431 |
| DraI | TTTAAA | 3 cut(s) | 124, 2178, 2304 |
| EaeI | YGGCCR | 5 cut(s) | 1349, 2016, 2535, 2678, 2951 |
| EagI | CGGCCG | 1 cut(s) | 1349 |
| Eam1104I | CTCTTC | 1 cut(s) | 534 |
| EarI | CTCTTC | 1 cut(s) | 534 |
| EciI | GGCGGA | 2 cut(s) | 1771, 2252 |
| EclXI | CGGCCG | 1 cut(s) | 1349 |
| Eco130I | CCWWGG | 2 cut(s) | 693, 875 |
| Eco147I | AGGCCT | 1 cut(s) | 1806 |
| Eco31I | GGTCTC | 1 cut(s) | 1482 |
| Eco47I | GGWCC | 4 cut(s) | 800, 1171, 1214, 1910 |
| Eco52I | CGGCCG | 1 cut(s) | 1349 |
| Eco57I | CTGAAG | 4 cut(s) | 1412, 1719, 1763, 2739 |
| Eco72I | CACGTG | 1 cut(s) | 1263 |
| Eco88I | CYCGRG | 1 cut(s) | 1384 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1214, 1910 |
| EcoT14I | CCWWGG | 2 cut(s) | 693, 875 |
| EcoT22I | ATGCAT | 1 cut(s) | 845 |
| ErhI | CCWWGG | 2 cut(s) | 693, 875 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 806, 838, 2680, 2712 |
| FaqI | GGGAC | 3 cut(s) | 1200, 2896, 2920 |
| FauNDI | CATATG | 2 cut(s) | 1010, 1080 |
| FblI | GTMKAC | 1 cut(s) | 2192 |
| FokI | GGATG | 6 cut(s) | 215, 588, 620, 1936, 2626, 2911 |
| FspBI | CTAG | 8 cut(s) | 138, 419, 918, 1205, 1406, 1907, 2558, 2570 |
| FspI | TGCGCA | 1 cut(s) | 1800 |
| GlaI | GCGC | 5 cut(s) | 1268, 1270, 1800, 2635, 2806 |
| GsaI | CCCAGC | 1 cut(s) | 2962 |
| HaeII | RGCGCY | 1 cut(s) | 2808 |
| HapII | CCGG | 3 cut(s) | 2266, 2534, 2929 |
| HgaI | GACGC | 2 cut(s) | 1631, 2851 |
| HhaI | GCGC | 5 cut(s) | 1269, 1271, 1801, 2636, 2807 |
| Hin1I | GRCGYC | 1 cut(s) | 2843 |
| Hin6I | GCGC | 5 cut(s) | 1267, 1269, 1799, 2634, 2805 |
| HinP1I | GCGC | 5 cut(s) | 1267, 1269, 1799, 2634, 2805 |
| HincII | GTYRAC | 2 cut(s) | 1141, 1239 |
| HindII | GTYRAC | 2 cut(s) | 1141, 1239 |
| HpaI | GTTAAC | 1 cut(s) | 1239 |
| HpaII | CCGG | 3 cut(s) | 2266, 2534, 2929 |
| HphI | GGTGA | 5 cut(s) | 578, 613, 782, 1700, 2491 |
| Hpy166II | GTNNAC | 5 cut(s) | 1141, 1239, 1421, 1708, 2193 |
| Hpy8I | GTNNAC | 5 cut(s) | 1141, 1239, 1421, 1708, 2193 |
| Hpy99I | CGWCG | 5 cut(s) | 1433, 1625, 2368, 2845, 3044 |
| HpyCH4III | ACNGT | 7 cut(s) | 381, 1175, 1681, 1725, 2107, 2474, 2977 |
| HpyCH4IV | ACGT | 8 cut(s) | 284, 477, 506, 1262, 1298, 2189, 2277, 2776 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 819, 1074, 1264, 1348, 1559, 2075, 2573, 2813 |
| HpyF3I | CTNAG | 5 cut(s) | 1073, 1412, 2370, 2407, 2431 |
| HpySE526I | ACGT | 8 cut(s) | 284, 477, 506, 1262, 1298, 2189, 2277, 2776 |
| Hsp92I | GRCGYC | 1 cut(s) | 2843 |
| HspAI | GCGC | 5 cut(s) | 1267, 1269, 1799, 2634, 2805 |
| KflI | GGGWCCC | 1 cut(s) | 1214 |
| KroI | GCCGGC | 2 cut(s) | 2265, 2533 |
| KroNI | GCCGGC | 2 cut(s) | 2267, 2535 |
| KspAI | GTTAAC | 1 cut(s) | 1239 |
| LmnI | GCTCC | 5 cut(s) | 1006, 1043, 1053, 1112, 1657 |
| Lsp1109I | GCAGC | 9 cut(s) | 532, 1389, 2070, 2200, 2618, 2684, 2725, 2747, 2836 |
| LweI | GCATC | 2 cut(s) | 1956, 2078 |
| MaeI | CTAG | 8 cut(s) | 138, 419, 918, 1205, 1406, 1907, 2558, 2570 |
| MaeII | ACGT | 8 cut(s) | 284, 477, 506, 1262, 1298, 2189, 2277, 2776 |
| MaeIII | GTNAC | 6 cut(s) | 1279, 1307, 1582, 1589, 2239, 2278 |
| MbiI | CCGCTC | 1 cut(s) | 3013 |
| MfeI | CAATTG | 4 cut(s) | 36, 2034, 2097, 2233 |
| MflI | RGATCY | 2 cut(s) | 2394, 2639 |
| MhlI | GDGCHC | 1 cut(s) | 1654 |
| MlsI | TGGCCA | 3 cut(s) | 2018, 2680, 2953 |
| MluNI | TGGCCA | 3 cut(s) | 2018, 2680, 2953 |
| MlyI | GAGTC | 2 cut(s) | 18, 41 |
| MmeI | TCCRAC | 4 cut(s) | 505, 513, 2493, 3126 |
| Mox20I | TGGCCA | 3 cut(s) | 2018, 2680, 2953 |
| Mph1103I | ATGCAT | 1 cut(s) | 845 |
| MroNI | GCCGGC | 2 cut(s) | 2265, 2533 |
| MroXI | GAANNNNTTC | 2 cut(s) | 643, 1704 |
| MscI | TGGCCA | 3 cut(s) | 2018, 2680, 2953 |
| MslI | CAYNNNNRTG | 5 cut(s) | 320, 808, 2077, 2510, 2929 |
| Msp20I | TGGCCA | 3 cut(s) | 2018, 2680, 2953 |
| MspA1I | CMGCKG | 4 cut(s) | 2631, 2738, 2849, 2877 |
| MspI | CCGG | 3 cut(s) | 2266, 2534, 2929 |
| MspR9I | CCNGG | 1 cut(s) | 2929 |
| MunI | CAATTG | 4 cut(s) | 36, 2034, 2097, 2233 |
| Mva1269I | GAATGC | 3 cut(s) | 394, 502, 3035 |
| MvnI | CGCG | 3 cut(s) | 1269, 2636, 3044 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 819, 1074, 1264, 1348, 1559, 2075, 2573, 2813 |
| NaeI | GCCGGC | 2 cut(s) | 2267, 2535 |
| NciI | CCSGG | 1 cut(s) | 2929 |
| NdeI | CATATG | 2 cut(s) | 1010, 1080 |
| NgoMIV | GCCGGC | 2 cut(s) | 2265, 2533 |
| NlaIV | GGNNCC | 5 cut(s) | 1215, 1216, 1912, 2396, 3062 |
| NmeAIII | GCCGAG | 6 cut(s) | 1301, 1349, 1377, 1538, 1631, 2749 |
| NruI | TCGCGA | 1 cut(s) | 3044 |
| NsbI | TGCGCA | 1 cut(s) | 1800 |
| NsiI | ATGCAT | 1 cut(s) | 845 |
| NspI | RCATGY | 1 cut(s) | 2889 |
| NspV | TTCGAA | 2 cut(s) | 2379, 2753 |
| PacI | TTAATTAA | 1 cut(s) | 2445 |
| PaeR7I | CTCGAG | 1 cut(s) | 1384 |
| PagI | TCATGA | 2 cut(s) | 1188, 1960 |
| PauI | GCGCGC | 1 cut(s) | 1267 |
| PceI | AGGCCT | 1 cut(s) | 1806 |
| PciI | ACATGT | 1 cut(s) | 2885 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2782 |
| PctI | GAATGC | 3 cut(s) | 394, 502, 3035 |
| PdiI | GCCGGC | 2 cut(s) | 2267, 2535 |
| PdmI | GAANNNNTTC | 2 cut(s) | 643, 1704 |
| PflFI | GACNNNGTC | 1 cut(s) | 1175 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2949 |
| Ple19I | CGATCG | 2 cut(s) | 1840, 2650 |
| PleI | GAGTC | 2 cut(s) | 18, 41 |
| PmaCI | CACGTG | 1 cut(s) | 1263 |
| PmlI | CACGTG | 1 cut(s) | 1263 |
| PpsI | GAGTC | 2 cut(s) | 18, 41 |
| Ppu21I | YACGTR | 1 cut(s) | 1263 |
| PpuMI | RGGWCCY | 2 cut(s) | 1214, 1910 |
| PscI | ACATGT | 1 cut(s) | 2885 |
| PshBI | ATTAAT | 1 cut(s) | 2445 |
| PsiI | TTATAA | 1 cut(s) | 3132 |
| Psp1406I | AACGTT | 1 cut(s) | 506 |
| Psp5II | RGGWCCY | 2 cut(s) | 1214, 1910 |
| PspCI | CACGTG | 1 cut(s) | 1263 |
| PspFI | CCCAGC | 1 cut(s) | 2958 |
| PspN4I | GGNNCC | 5 cut(s) | 1215, 1216, 1912, 2396, 3062 |
| PspPI | GGNCC | 6 cut(s) | 800, 1171, 1214, 1910, 2940, 2961 |
| PspPPI | RGGWCCY | 2 cut(s) | 1214, 1910 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1531, 1563, 2781, 2813 |
| PstI | CTGCAG | 1 cut(s) | 2743 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2738, 2747 |
| PsuI | RGATCY | 2 cut(s) | 2394, 2639 |
| PsyI | GACNNNGTC | 1 cut(s) | 1175 |
| PteI | GCGCGC | 1 cut(s) | 1267 |
| PvuI | CGATCG | 2 cut(s) | 1840, 2650 |
| PvuII | CAGCTG | 3 cut(s) | 2631, 2738, 2849 |
| RruI | TCGCGA | 1 cut(s) | 3044 |
| RsaI | GTAC | 9 cut(s) | 146, 1512, 2556, 2779, 2790, 2863, 2920, 3106, 3165 |
| RsaNI | GTAC | 9 cut(s) | 145, 1511, 2555, 2778, 2789, 2862, 2919, 3105, 3164 |
| RseI | CAYNNNNRTG | 5 cut(s) | 320, 808, 2077, 2510, 2929 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1171 |
| RsrII | CGGWCCG | 1 cut(s) | 1171 |
| Sau96I | GGNCC | 6 cut(s) | 800, 1171, 1214, 1910, 2940, 2961 |
| ScaI | AGTACT | 3 cut(s) | 1512, 2556, 2790 |
| SchI | GAGTC | 2 cut(s) | 18, 41 |
| ScrFI | CCNGG | 1 cut(s) | 2929 |
| SduI | GDGCHC | 1 cut(s) | 1654 |
| SfaNI | GCATC | 2 cut(s) | 1956, 2078 |
| SfcI | CTRYAG | 2 cut(s) | 2200, 2739 |
| Sfr274I | CTCGAG | 1 cut(s) | 1384 |
| SfuI | TTCGAA | 2 cut(s) | 2379, 2753 |
| SinI | GGWCC | 4 cut(s) | 800, 1171, 1214, 1910 |
| SlaI | CTCGAG | 1 cut(s) | 1384 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 320, 808, 2077, 2510, 2929 |
| SmlI | CTYRAG | 1 cut(s) | 1384 |
| SmoI | CTYRAG | 1 cut(s) | 1384 |
| SpeI | ACTAGT | 1 cut(s) | 2557 |
| SseBI | AGGCCT | 1 cut(s) | 1806 |
| SsiI | CCGC | 8 cut(s) | 548, 1655, 1756, 2263, 2596, 2599, 2877, 3013 |
| SspI | AATATT | 1 cut(s) | 2114 |
| SspMI | CTAG | 8 cut(s) | 138, 419, 918, 1205, 1406, 1907, 2558, 2570 |
| StuI | AGGCCT | 1 cut(s) | 1806 |
| StyD4I | CCNGG | 1 cut(s) | 2927 |
| StyI | CCWWGG | 2 cut(s) | 693, 875 |
| TaaI | ACNGT | 7 cut(s) | 381, 1175, 1681, 1725, 2107, 2474, 2977 |
| TaiI | ACGT | 8 cut(s) | 287, 480, 509, 1265, 1301, 2192, 2280, 2779 |
| TaqII | GACCGA | 1 cut(s) | 1433 |
| TatI | WGTACW | 5 cut(s) | 1510, 2554, 2788, 3104, 3163 |
| TauI | GCSGC | 3 cut(s) | 551, 2599, 2602 |
| TscAI | CASTG | 6 cut(s) | 1215, 1441, 1632, 1686, 1730, 3062 |
| TseI | GCWGC | 9 cut(s) | 545, 1402, 2083, 2213, 2631, 2672, 2735, 2738, 2849 |
| TspGWI | ACGGA | 3 cut(s) | 361, 1184, 3028 |
| TspRI | CASTG | 6 cut(s) | 1215, 1441, 1632, 1686, 1730, 3062 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1175 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2949 |
| VpaK11BI | GGWCC | 4 cut(s) | 800, 1171, 1214, 1910 |
| VspI | ATTAAT | 1 cut(s) | 2445 |
| XapI | RAATTY | 7 cut(s) | 119, 304, 757, 1773, 2173, 2333, 2587 |
| XceI | RCATGY | 1 cut(s) | 2889 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2688 |
| XhoI | CTCGAG | 1 cut(s) | 1384 |
| XmiI | GTMKAC | 1 cut(s) | 2192 |
| XmnI | GAANNNNTTC | 2 cut(s) | 643, 1704 |
| XspI | CTAG | 8 cut(s) | 138, 419, 918, 1205, 1406, 1907, 2558, 2570 |
| ZrmI | AGTACT | 3 cut(s) | 1512, 2556, 2790 |
| Zsp2I | ATGCAT | 1 cut(s) | 845 |