pycom1341g00040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001341
Physical Location & Seq
Forward (+)
87028 .. 88197
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1341g00040.3

Sequence Viewer

Length: 810 bp
ATGGATGTGTATATGAGATGGTTTTCTGAATATGGAAGAGTGAATGAGAATGAATGCAATGGATGCTTATTTATAGTTGTGCATGTGATTAAAGGGTGGGAGTGCATGTGCTTTGACAGAAATGAAAGGGTGCATGTGGGTGAATGTGTGGCTGATTTGTGGTGCAATGATGAAGTGAATGTGATTGTGGAAATGCATGTGGAGTGTGCTGAAATATTGGGAATTGCATGTGGCTGCAATGGATTAAAGAAAGGGGGAAGTGCATGTGCTGAAATGATGGTGTGGAATGGTGGAAAGCCACGACAAGGGATGCATGTGGGTGTTTTGGTGACTGAAATGATTAAGTGGGATGGATATGTGGCTGCAATGATGAATTGGGAGAGCATGTGGGTGGAAATGCATGTGGGTGAATGTGTGGCTGCATGTGTGTATAAAAGGCTAGAATCTGATTCAAAGAGAATGGCATTTGTTTTGAACTTTGTTTCCTCATTTTCCACCTCCAAATCAGTTAAATGGCTCAAATCTGATGTAAATGGTATTTCCACATATGGCATGTGTTTTGAGCGTTTTTTTCTTGTTTTCACAGCTTGCAAATCAGGTCACAAAGCCCTTCCTTTTGCTCCAAACTTAAGCTATCCATTCCAAGTCCAATTTTGCTCCAAAATGCTCCAAAATGCATATTTTTGCTTCCTTAGCCATATGAACCTAAAAACACACGAAAATGGCTCCTATCAAATTCCCCCACACTTAGCTTTTGCTAGTCCTCGAGCAAAACAAAACAAAAGAAACCAAAAACAAAACAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.65

Weight (kDa)

8.11

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 735
AfiI CCNNNNNNNGG 1 cut(s) 305
AflII CTTAAG 1 cut(s) 628
AgsI TTSAA 2 cut(s) 453, 475
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 3 cut(s) 587, 633, 752
AluI AGCT 3 cut(s) 587, 633, 752
Ama87I CYCGRG 1 cut(s) 765
ApeKI GCWGC 3 cut(s) 234, 362, 419
ApoI RAATTY 1 cut(s) 735
AsuHPI GGTGA 3 cut(s) 152, 340, 419
AvaI CYCGRG 1 cut(s) 765
BbvI GCAGC 3 cut(s) 221, 349, 406
BccI CCATC 3 cut(s) 12, 271, 344
BfaI CTAG 2 cut(s) 440, 759
BfrI CTTAAG 1 cut(s) 628
BisI GCNGC 3 cut(s) 235, 363, 420
BlsI GCNGC 3 cut(s) 236, 364, 421
BmeT110I CYCGRG 1 cut(s) 765
BmiI GGNNCC 1 cut(s) 727
BmsI GCATC 2 cut(s) 53, 300
Bpu10I CCTNAGC 1 cut(s) 692
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse3DI GCAATG 4 cut(s) 64, 172, 244, 372
BseGI GGATG 4 cut(s) 10, 68, 315, 355
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 4 cut(s) 64, 172, 244, 372
BseXI GCAGC 3 cut(s) 221, 349, 406
BsiHKCI CYCGRG 1 cut(s) 765
BslI CCNNNNNNNGG 1 cut(s) 305
BsmI GAATGC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 765
BspLI GGNNCC 1 cut(s) 727
BspTI CTTAAG 1 cut(s) 628
BsrDI GCAATG 4 cut(s) 64, 172, 244, 372
Bst6I CTCTTC 1 cut(s) 31
BstAFI CTTAAG 1 cut(s) 628
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 2 cut(s) 692, 748
BstF5I GGATG 4 cut(s) 10, 68, 315, 355
BstMWI GCNNNNNNNGC 2 cut(s) 63, 693
BstV1I GCAGC 3 cut(s) 221, 349, 406
BtsCI GGATG 4 cut(s) 10, 68, 315, 355
Cac8I GCNNGC 1 cut(s) 589
DdeI CTNAG 2 cut(s) 692, 748
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 765
EcoT22I ATGCAT 4 cut(s) 198, 315, 402, 679
FauNDI CATATG 2 cut(s) 547, 699
Fnu4HI GCNGC 3 cut(s) 235, 363, 420
FokI GGATG 4 cut(s) 17, 75, 322, 362
Fsp4HI GCNGC 3 cut(s) 235, 363, 420
FspBI CTAG 2 cut(s) 440, 759
GluI GCNGC 3 cut(s) 235, 363, 420
HinfI GANTC 2 cut(s) 443, 449
HphI GGTGA 3 cut(s) 152, 340, 419
Hpy188I TCNGA 3 cut(s) 28, 448, 526
HpyAV CCTTC 1 cut(s) 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 693
HpyF3I CTNAG 2 cut(s) 692, 748
LmnI GCTCC 4 cut(s) 625, 662, 672, 731
LpnPI CCDG 1 cut(s) 582
Lsp1109I GCAGC 3 cut(s) 221, 349, 406
LweI GCATC 2 cut(s) 53, 300
MaeI CTAG 2 cut(s) 440, 759
MaeIII GTNAC 2 cut(s) 328, 599
MboII GAAGA 1 cut(s) 48
MluCI AATT 4 cut(s) 222, 373, 650, 735
MnlI CCTC 3 cut(s) 496, 508, 774
Mph1103I ATGCAT 4 cut(s) 198, 315, 402, 679
MseI TTAA 5 cut(s) 90, 245, 342, 510, 629
MslI CAYNNNNRTG 5 cut(s) 138, 318, 389, 405, 720
MspCI CTTAAG 1 cut(s) 628
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 63, 693
NdeI CATATG 2 cut(s) 547, 699
NlaIV GGNNCC 1 cut(s) 727
NmuCI GTSAC 2 cut(s) 328, 599
NsiI ATGCAT 4 cut(s) 198, 315, 402, 679
PaeR7I CTCGAG 1 cut(s) 765
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 2 cut(s) 443, 449
PkrI GCNGC 3 cut(s) 236, 364, 421
PspN4I GGNNCC 1 cut(s) 727
PspXI VCTCGAGB 1 cut(s) 765
RseI CAYNNNNRTG 5 cut(s) 138, 318, 389, 405, 720
SaqAI TTAA 5 cut(s) 90, 245, 342, 510, 629
SatI GCNGC 3 cut(s) 235, 363, 420
SetI ASST 6 cut(s) 500, 589, 601, 635, 708, 754
SfaNI GCATC 2 cut(s) 53, 300
Sfr274I CTCGAG 1 cut(s) 765
SlaI CTCGAG 1 cut(s) 765
SmiMI CAYNNNNRTG 5 cut(s) 138, 318, 389, 405, 720
SmlI CTYRAG 2 cut(s) 628, 765
SmoI CTYRAG 2 cut(s) 628, 765
Sse9I AATT 4 cut(s) 222, 373, 650, 735
SspI AATATT 1 cut(s) 216
SspMI CTAG 2 cut(s) 440, 759
TaqI TCGA 1 cut(s) 766
TasI AATT 4 cut(s) 222, 373, 650, 735
TfiI GAWTC 2 cut(s) 443, 449
Tru1I TTAA 5 cut(s) 90, 245, 342, 510, 629
Tru9I TTAA 5 cut(s) 90, 245, 342, 510, 629
TseFI GTSAC 2 cut(s) 328, 599
TseI GCWGC 3 cut(s) 234, 362, 419
Tsp45I GTSAC 2 cut(s) 328, 599
TspDTI ATGAA 5 cut(s) 66, 138, 186, 386, 716
Vha464I CTTAAG 1 cut(s) 628
XapI RAATTY 1 cut(s) 735
XhoI CTCGAG 1 cut(s) 765
XspI CTAG 2 cut(s) 440, 759
Zsp2I ATGCAT 4 cut(s) 198, 315, 402, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.