pycom01g01440

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
1363894 .. 1365635
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01440.1

Sequence Viewer

Length: 1215 bp
ATGGACTTGAATAACCCAAATCCACAAGGAAATAGAAGGCTTCTAGAATGCCTTGCAAGGAAAGGGCAGATTAGGGCTTCTAGAAACCCTCTAATGCAAGGAAAACTCACGGCAAGGATGGATAAGGTTTCTAGAACAAGGATAAGGTATCCTAAATGGATAAAGTGCCCTAAATGGATAAGGACTCCTCATTGCACTTGGAAACTTTGCCTATTAGGATTAGGAACCCTTGTCTTCGTCATTCCTTCTTCATCTTGGACTCCTTTTCCTTCTTGGACTTGGAAAACTTCTTTGTTGCTTAGGAAACCTTGTTTGAGTAGGAAACTTTGTTCTTCTAGGAATCCTAATTCAACTAGGAAACCCATTTTAACTAGGAATCCTAATTCAACTAGGAAACCCATTTTAACTAGGAATCCTAATTCAACTAGGAAACCATCTTCCATTAGGGACTTTCCTACTTCGACTAGGAAACCTTGCTCAAGTAGGAATCATCATCTTCAAGTCTTCAATTTTGTCCATCCTCTTGGCTCCAAGCATATGATATCCATTCCAAGCTCTAATTTGCTCCAAAAGGCTCCAAAATGCATCCTTTTGCATATTTTGAAAAACACTATAAATGCACAAGAACAATGGGTGAAACTCGTTTATAAACTAGCATCGAGTTCATGCATGAAAACTAAGTATGCATCCTTAATCAACATACAAGAACAAGTTTTTAATAAACAGATAATTGAATTGCAATCACAACTTAACAAATCACAATTGGAAGAAATCAATTCATATTTCAAACATCCACTCATGATTACAACAAACTTAGAAAGTAATAGCAAAGTAAACATTGAAAACAAGAACGAAGTACACCTAAAACACTCCAATCTGCAAAATGATGTGTTTAGGATAGGGATGGATGTAGGGGACGGCAAGGGTTGTTTTTGGGCAGAAAGTATGAAGAATGGTGAAGTATGGATGAATGAATCCTTTGTGGCTGCAACAAGGAGGTTTATTAATAGGATTTCAGGAATTAAAACCCTAGGTTATTTAGGTAATCAGAAATTAAGAAGAGGAAGGGTCAAAGGAAGTGCACGGCAAGGCTTGCATGAAATAAGTAAGTTGAAATCAGGAATTAGGGGAAAAAGGCTAAGTCTTGCGGCACAAGGGAGGAAAAGAAGGGTAAAGTGCCAAACTTGCAGATTTTGGGAGAAAAGGAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

46.53

Weight (kDa)

10.93

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AciI CCGC 1 cut(s) 1148
AfaI GTAC 1 cut(s) 858
AloI GAACNNNNNNTCC 2 cut(s) 313, 345
AluBI AGCT 1 cut(s) 555
AluI AGCT 1 cut(s) 555
Alw21I GWGCWC 1 cut(s) 1084
Alw44I GTGCAC 1 cut(s) 1080
ApaLI GTGCAC 1 cut(s) 1080
ApeKI GCWGC 1 cut(s) 986
AseI ATTAAT 1 cut(s) 1005
AspA2I CCTAGG 1 cut(s) 1030
AsuHPI GGTGA 2 cut(s) 646, 968
AvrII CCTAGG 1 cut(s) 1030
BaeGI GKGCMC 2 cut(s) 170, 1084
BbsI GAAGAC 2 cut(s) 226, 496
Bbv12I GWGCWC 1 cut(s) 1084
BbvI GCAGC 1 cut(s) 973
BccI CCATC 4 cut(s) 112, 442, 525, 898
BceAI ACGGC 3 cut(s) 126, 934, 1100
BciVI GTATCC 1 cut(s) 159
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 2 cut(s) 987, 1149
BlnI CCTAGG 1 cut(s) 1030
BlsI GCNGC 2 cut(s) 988, 1150
BmiI GGNNCC 3 cut(s) 226, 529, 576
BmsI GCATC 3 cut(s) 594, 665, 695
BpiI GAAGAC 2 cut(s) 226, 496
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 1030
Bse3DI GCAATG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 1030
BseGI GGATG 8 cut(s) 123, 517, 585, 686, 790, 909, 913, 972
BseMI GCAATG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 170, 1084
BseXI GCAGC 1 cut(s) 973
BsiHKAI GWGCWC 1 cut(s) 1084
BslFI GGGAC 2 cut(s) 461, 929
BsmFI GGGAC 2 cut(s) 461, 929
BsmI GAATGC 1 cut(s) 53
Bsp1286I GDGCHC 2 cut(s) 170, 1084
BspACI CCGC 1 cut(s) 1148
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 3 cut(s) 226, 529, 576
BsrDI GCAATG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 1030
BssT1I CCWWGG 1 cut(s) 1030
Bst6I CTCTTC 1 cut(s) 1054
BstAPI GCANNNNNTGC 1 cut(s) 1093
BstC8I GCNNGC 1 cut(s) 1094
BstDEI CTNAG 4 cut(s) 299, 678, 814, 1139
BstF5I GGATG 8 cut(s) 123, 517, 585, 686, 790, 909, 913, 972
BstMWI GCNNNNNNNGC 2 cut(s) 1093, 1185
BstSLI GKGCMC 2 cut(s) 170, 1084
BstV1I GCAGC 1 cut(s) 973
BstV2I GAAGAC 2 cut(s) 226, 496
BstXI CCANNNNNNTGG 1 cut(s) 524
BsuI GTATCC 1 cut(s) 159
BtsCI GGATG 8 cut(s) 123, 517, 585, 686, 790, 909, 913, 972
Cac8I GCNNGC 1 cut(s) 1094
CciI TCATGA 1 cut(s) 798
Csp6I GTAC 1 cut(s) 857
CviAII CATG 4 cut(s) 666, 670, 799, 1097
CviJI RGCY 8 cut(s) 40, 77, 528, 555, 575, 986, 1092, 1138
CviKI_1 RGCY 8 cut(s) 40, 77, 528, 555, 575, 986, 1092, 1138
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 4 cut(s) 299, 678, 814, 1139
Eam1104I CTCTTC 1 cut(s) 1054
EarI CTCTTC 1 cut(s) 1054
Eco130I CCWWGG 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 543
EcoRV GATATC 1 cut(s) 543
EcoT14I CCWWGG 1 cut(s) 1030
EcoT22I ATGCAT 3 cut(s) 587, 671, 688
ErhI CCWWGG 1 cut(s) 1030
FaeI CATG 4 cut(s) 669, 673, 802, 1100
FaqI GGGAC 2 cut(s) 461, 929
FatI CATG 4 cut(s) 665, 669, 798, 1096
FauNDI CATATG 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 987, 1149
FokI GGATG 8 cut(s) 130, 504, 572, 673, 777, 916, 920, 979
Fsp4HI GCNGC 2 cut(s) 987, 1149
GluI GCNGC 2 cut(s) 987, 1149
Hin1II CATG 4 cut(s) 669, 673, 802, 1100
HinfI GANTC 7 cut(s) 184, 259, 340, 376, 412, 487, 974
HphI GGTGA 2 cut(s) 646, 968
Hpy166II GTNNAC 3 cut(s) 835, 859, 1082
Hpy188I TCNGA 1 cut(s) 1050
Hpy188III TCNNGA 6 cut(s) 44, 81, 132, 799, 1017, 1119
Hpy8I GTNNAC 3 cut(s) 835, 859, 1082
HpyAV CCTTC 5 cut(s) 30, 255, 279, 1059, 1161
HpyF10VI GCNNNNNNNGC 2 cut(s) 1093, 1185
HpyF3I CTNAG 4 cut(s) 299, 678, 814, 1139
Hsp92II CATG 4 cut(s) 669, 673, 802, 1100
LmnI GCTCC 3 cut(s) 533, 570, 580
LpnPI CCDG 2 cut(s) 1002, 1104
Lsp1109I GCAGC 1 cut(s) 973
LweI GCATC 3 cut(s) 594, 665, 695
MboII GAAGA 9 cut(s) 226, 240, 324, 429, 488, 496, 779, 961, 1071
MfeI CAATTG 1 cut(s) 761
MhlI GDGCHC 2 cut(s) 170, 1084
MlyI GAGTC 2 cut(s) 178, 253
MnlI CCTC 6 cut(s) 99, 198, 531, 990, 1055, 1152
Mph1103I ATGCAT 3 cut(s) 587, 671, 688
MseI TTAA 8 cut(s) 368, 404, 692, 717, 750, 1005, 1023, 1055
MunI CAATTG 1 cut(s) 761
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 1093, 1185
NdeI CATATG 1 cut(s) 537
NlaIII CATG 4 cut(s) 669, 673, 802, 1100
NlaIV GGNNCC 3 cut(s) 226, 529, 576
NsiI ATGCAT 3 cut(s) 587, 671, 688
PagI TCATGA 1 cut(s) 798
PctI GAATGC 1 cut(s) 53
PfeI GAWTC 5 cut(s) 340, 376, 412, 487, 974
PkrI GCNGC 2 cut(s) 988, 1150
PleI GAGTC 2 cut(s) 178, 253
PpsI GAGTC 2 cut(s) 178, 253
PshBI ATTAAT 1 cut(s) 1005
PsiI TTATAA 1 cut(s) 648
PspN4I GGNNCC 3 cut(s) 226, 529, 576
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
SaqAI TTAA 8 cut(s) 368, 404, 692, 717, 750, 1005, 1023, 1055
SatI GCNGC 2 cut(s) 987, 1149
SchI GAGTC 2 cut(s) 178, 253
SduI GDGCHC 2 cut(s) 170, 1084
SetI ASST 9 cut(s) 129, 149, 310, 475, 557, 864, 1001, 1036, 1045
SfaNI GCATC 3 cut(s) 594, 665, 695
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
SsiI CCGC 1 cut(s) 1148
StyI CCWWGG 1 cut(s) 1030
TaqI TCGA 2 cut(s) 461, 659
TatI WGTACW 1 cut(s) 856
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 5 cut(s) 340, 376, 412, 487, 974
Tru1I TTAA 8 cut(s) 368, 404, 692, 717, 750, 1005, 1023, 1055
Tru9I TTAA 8 cut(s) 368, 404, 692, 717, 750, 1005, 1023, 1055
TseI GCWGC 1 cut(s) 986
TspDTI ATGAA 8 cut(s) 240, 654, 686, 768, 962, 983, 987, 1113
VneI GTGCAC 1 cut(s) 1080
VspI ATTAAT 1 cut(s) 1005
XbaI TCTAGA 3 cut(s) 43, 80, 131
XmaJI CCTAGG 1 cut(s) 1030
Zsp2I ATGCAT 3 cut(s) 587, 671, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.