pycom01g02250

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
1856613 .. 1857497
885 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02250.5

Sequence Viewer

Length: 498 bp
ATGCATAACAAAGATACATATCAAAAGTCATTAAGTTTTGTGAGAACTATAAGCATTGACAAGGCATTCATCACTATGAAACGCTTGAGACTCATACCAATGATTTACTTAACGCGATTTTATGCATGCAAATTAAGTGTTAACCCCCAACCCACATACATAAACCATCATATAAAACATATAATCATGGCTTCGAATTCACCTCCAACTAAAAGGAAGTTAGTTCCTCATAATACACCTAGAAACACTCTAGGTGGCTCGTCCTTCCTTCCTTGCTGCGCACAATGGGGATTTGTTTGGGGTAGAGGGTGGTGGTTTTTGAGTGTTGTGGCATCATGTATTTATAGGGTGAAGGGGAGCACCAAAGAACATGAACACTTTCAATCAGATTCCAATGAGGACAACGAATGGTCCTTGTGGCAAATTCTTGAACTTCTAGAAGGGTTACAATTGGTGAAAATGAATAAGATAAGGTTGGATAAGGTTTGGATAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.4

Weight (kDa)

9.85

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 280
AccII CGCG 1 cut(s) 115
AcsI RAATTY 2 cut(s) 196, 423
AgsI TTSAA 2 cut(s) 383, 431
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 2 cut(s) 196, 423
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 411
AsuHPI GGTGA 3 cut(s) 192, 361, 466
AsuII TTCGAA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 3 cut(s) 240, 251, 437
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 411
BmsI GCATC 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 362
BspFNI CGCG 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 127
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 129
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 127
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 411
CviAII CATG 4 cut(s) 126, 187, 336, 371
CviJI RGCY 2 cut(s) 191, 258
CviKI_1 RGCY 2 cut(s) 191, 258
Eco47I GGWCC 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 196
EcoT22I ATGCAT 2 cut(s) 6, 127
FaeI CATG 4 cut(s) 129, 190, 339, 374
FatI CATG 4 cut(s) 125, 186, 335, 370
Fnu4HI GCNGC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 3 cut(s) 240, 251, 437
FspI TGCGCA 1 cut(s) 280
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 281
Hin1II CATG 4 cut(s) 129, 190, 339, 374
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 90, 389
HpaI GTTAAC 1 cut(s) 142
HphI GGTGA 3 cut(s) 192, 361, 466
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 428, 437
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 4 cut(s) 274, 278, 346, 434
HpyCH4V TGCA 3 cut(s) 4, 125, 129
Hsp92II CATG 4 cut(s) 129, 190, 339, 374
HspAI GCGC 1 cut(s) 279
KspAI GTTAAC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 357
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 341
MaeI CTAG 3 cut(s) 240, 251, 437
MaeIII GTNAC 1 cut(s) 444
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 4 cut(s) 131, 196, 423, 449
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 230, 456
MnlI CCTC 4 cut(s) 213, 237, 299, 391
Mph1103I ATGCAT 2 cut(s) 6, 127
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 4 cut(s) 32, 110, 134, 141
MslI CAYNNNNRTG 2 cut(s) 74, 98
MunI CAATTG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 65
MvnI CGCG 1 cut(s) 115
NlaIII CATG 4 cut(s) 129, 190, 339, 374
NsbI TGCGCA 1 cut(s) 280
NsiI ATGCAT 2 cut(s) 6, 127
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 194
PaeI GCATGC 1 cut(s) 129
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 411
RseI CAYNNNNRTG 2 cut(s) 74, 98
SaqAI TTAA 4 cut(s) 32, 110, 134, 141
SatI GCNGC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 411
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 362
SetI ASST 5 cut(s) 205, 241, 256, 476, 486
SfaNI GCATC 1 cut(s) 341
SfuI TTCGAA 1 cut(s) 194
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 74, 98
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SphI GCATGC 1 cut(s) 129
Sse9I AATT 4 cut(s) 131, 196, 423, 449
SspMI CTAG 3 cut(s) 240, 251, 437
TaqI TCGA 1 cut(s) 194
TasI AATT 4 cut(s) 131, 196, 423, 449
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 4 cut(s) 32, 110, 134, 141
Tru9I TTAA 4 cut(s) 32, 110, 134, 141
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 4 cut(s) 58, 92, 387, 476
VpaK11BI GGWCC 1 cut(s) 411
XapI RAATTY 2 cut(s) 196, 423
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 3 cut(s) 240, 251, 437
Zsp2I ATGCAT 2 cut(s) 6, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.