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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 5 cut(s) | 1625, 2982, 4266, 4298, 4352 |
| Acc36I | ACCTGC | 1 cut(s) | 990 |
| AccB1I | GGYRCC | 1 cut(s) | 435 |
| AciI | CCGC | 7 cut(s) | 1877, 1926, 1966, 1997, 2129, 3339, 3471 |
| AclI | AACGTT | 1 cut(s) | 474 |
| AclWI | GGATC | 3 cut(s) | 811, 1137, 3934 |
| AdeI | CACNNNGTG | 1 cut(s) | 2814 |
| AfaI | GTAC | 3 cut(s) | 449, 3249, 3919 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 877, 1718, 1876, 3165 |
| AflII | CTTAAG | 2 cut(s) | 634, 1430 |
| AflIII | ACRYGT | 3 cut(s) | 651, 1378, 1842 |
| AhlI | ACTAGT | 1 cut(s) | 1591 |
| AjnI | CCWGG | 1 cut(s) | 599 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3299, 3331 |
| Alw26I | GTCTC | 1 cut(s) | 199 |
| AlwI | GGATC | 3 cut(s) | 811, 1137, 3934 |
| AoxI | GGCC | 4 cut(s) | 406, 2186, 3258, 3632 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1043, 1075, 1550, 1582 |
| AseI | ATTAAT | 2 cut(s) | 3893, 3897 |
| AspA2I | CCTAGG | 2 cut(s) | 2242, 3922 |
| AspS9I | GGNCC | 7 cut(s) | 388, 407, 950, 2186, 2504, 3258, 3632 |
| AsuC2I | CCSGG | 1 cut(s) | 1143 |
| AsuHPI | GGTGA | 7 cut(s) | 134, 1996, 3839, 3854, 3921, 4044, 4269 |
| AsuNHI | GCTAGC | 2 cut(s) | 1354, 2738 |
| AvaII | GGWCC | 3 cut(s) | 388, 950, 2504 |
| AvrII | CCTAGG | 2 cut(s) | 2242, 3922 |
| AxyI | CCTNAGG | 2 cut(s) | 771, 837 |
| BaeGI | GKGCMC | 1 cut(s) | 2810 |
| BanI | GGYRCC | 1 cut(s) | 435 |
| BauI | CACGAG | 2 cut(s) | 607, 2407 |
| BbsI | GAAGAC | 1 cut(s) | 2318 |
| BceAI | ACGGC | 3 cut(s) | 3190, 3199, 3230 |
| BciT130I | CCWGG | 1 cut(s) | 601 |
| BciVI | GTATCC | 1 cut(s) | 606 |
| BcnI | CCSGG | 1 cut(s) | 1143 |
| BcoDI | GTCTC | 1 cut(s) | 199 |
| BcuI | ACTAGT | 1 cut(s) | 1591 |
| BfmI | CTRYAG | 2 cut(s) | 51, 4070 |
| BfrI | CTTAAG | 2 cut(s) | 634, 1430 |
| BfuAI | ACCTGC | 1 cut(s) | 990 |
| BfuI | GTATCC | 1 cut(s) | 606 |
| BlnI | CCTAGG | 2 cut(s) | 2242, 3922 |
| BmcAI | AGTACT | 1 cut(s) | 449 |
| Bme1390I | CCNGG | 2 cut(s) | 601, 1143 |
| Bme18I | GGWCC | 3 cut(s) | 388, 950, 2504 |
| BmgT120I | GGNCC | 7 cut(s) | 388, 407, 950, 2186, 2504, 3258, 3632 |
| BmiI | GGNNCC | 5 cut(s) | 389, 437, 2635, 3153, 3633 |
| BmrFI | CCNGG | 2 cut(s) | 601, 1143 |
| BmsI | GCATC | 4 cut(s) | 1658, 2380, 2908, 4245 |
| BmtI | GCTAGC | 2 cut(s) | 1358, 2742 |
| BpiI | GAAGAC | 1 cut(s) | 2318 |
| Bpu10I | CCTNAGC | 1 cut(s) | 511 |
| BpuMI | CCSGG | 1 cut(s) | 1143 |
| BsaAI | YACGTR | 1 cut(s) | 1496 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3931 |
| BsaJI | CCNNGG | 5 cut(s) | 431, 599, 1142, 2242, 3922 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 877, 1718, 1876, 3165 |
| Bse1I | ACTGG | 2 cut(s) | 747, 1676 |
| Bse21I | CCTNAGG | 2 cut(s) | 771, 837 |
| Bse3DI | GCAATG | 7 cut(s) | 3200, 3209, 3694, 3727, 3760, 3793, 3826 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3931 |
| BseBI | CCWGG | 1 cut(s) | 601 |
| BseDI | CCNNGG | 5 cut(s) | 431, 599, 1142, 2242, 3922 |
| BseJI | GATNNNNATC | 1 cut(s) | 3931 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 877, 1718, 1876, 3165 |
| BseMI | GCAATG | 7 cut(s) | 3200, 3209, 3694, 3727, 3760, 3793, 3826 |
| BseMII | CTCAG | 3 cut(s) | 828, 3360, 3905 |
| BseNI | ACTGG | 2 cut(s) | 747, 1676 |
| BseRI | GAGGAG | 1 cut(s) | 4097 |
| BseSI | GKGCMC | 1 cut(s) | 2810 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1619 |
| BshFI | GGCC | 4 cut(s) | 408, 2188, 3260, 3634 |
| BshNI | GGYRCC | 1 cut(s) | 435 |
| BsiEI | CGRYCG | 1 cut(s) | 1619 |
| BsiSI | CCGG | 1 cut(s) | 1142 |
| BslFI | GGGAC | 3 cut(s) | 436, 3167, 3206 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 877, 1718, 1876, 3165 |
| BsmAI | GTCTC | 1 cut(s) | 199 |
| BsmFI | GGGAC | 3 cut(s) | 436, 3167, 3206 |
| BsmI | GAATGC | 8 cut(s) | 42, 624, 1174, 1356, 1565, 3576, 4319, 4397 |
| BsnI | GGCC | 4 cut(s) | 408, 2188, 3260, 3634 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2810 |
| Bsp143I | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| BspACI | CCGC | 7 cut(s) | 1877, 1926, 1966, 1997, 2129, 3339, 3471 |
| BspANI | GGCC | 4 cut(s) | 408, 2188, 3260, 3634 |
| BspCNI | CTCAG | 3 cut(s) | 829, 3361, 3906 |
| BspHI | TCATGA | 2 cut(s) | 1702, 4158 |
| BspLI | GGNNCC | 5 cut(s) | 389, 437, 2635, 3153, 3633 |
| BspMAI | CTGCAG | 1 cut(s) | 4074 |
| BspMI | ACCTGC | 1 cut(s) | 990 |
| BspOI | GCTAGC | 2 cut(s) | 1358, 2742 |
| BspPI | GGATC | 3 cut(s) | 811, 1137, 3934 |
| BspQI | GCTCTTC | 1 cut(s) | 1859 |
| BspT107I | GGYRCC | 1 cut(s) | 435 |
| BspTI | CTTAAG | 2 cut(s) | 634, 1430 |
| BsrDI | GCAATG | 7 cut(s) | 3200, 3209, 3694, 3727, 3760, 3793, 3826 |
| BsrI | ACTGG | 2 cut(s) | 747, 1676 |
| BssECI | CCNNGG | 5 cut(s) | 431, 599, 1142, 2242, 3922 |
| BssMI | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| BssSI | CACGAG | 2 cut(s) | 607, 2407 |
| BssT1I | CCWWGG | 3 cut(s) | 431, 2242, 3922 |
| Bst2BI | CACGAG | 2 cut(s) | 607, 2407 |
| Bst2UI | CCWGG | 1 cut(s) | 601 |
| Bst4CI | ACNGT | 2 cut(s) | 1030, 2584 |
| Bst6I | CTCTTC | 4 cut(s) | 1859, 3962, 4082, 4394 |
| BstAFI | CTTAAG | 2 cut(s) | 634, 1430 |
| BstBAI | YACGTR | 1 cut(s) | 1496 |
| BstC8I | GCNNGC | 2 cut(s) | 1356, 2740 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3163 |
| BstKTI | GATC | 8 cut(s) | 6, 641, 806, 1132, 1529, 1619, 3929, 4375 |
| BstMAI | GTCTC | 1 cut(s) | 199 |
| BstMBI | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| BstMCI | CGRYCG | 1 cut(s) | 1619 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 966, 1076, 2135, 2520, 3211, 3631 |
| BstNI | CCWGG | 1 cut(s) | 601 |
| BstSCI | CCNGG | 2 cut(s) | 599, 1141 |
| BstSFI | CTRYAG | 2 cut(s) | 51, 4070 |
| BstSLI | GKGCMC | 1 cut(s) | 2810 |
| BstV2I | GAAGAC | 1 cut(s) | 2318 |
| BstX2I | RGATCY | 1 cut(s) | 803 |
| BstYI | RGATCY | 1 cut(s) | 803 |
| Bsu36I | CCTNAGG | 2 cut(s) | 771, 837 |
| BsuI | GTATCC | 1 cut(s) | 606 |
| BsuRI | GGCC | 4 cut(s) | 408, 2188, 3260, 3634 |
| BtgZI | GCGATG | 1 cut(s) | 3647 |
| BveI | ACCTGC | 1 cut(s) | 990 |
| Cac8I | GCNNGC | 2 cut(s) | 1356, 2740 |
| CciI | TCATGA | 2 cut(s) | 1702, 4158 |
| Cfr13I | GGNCC | 7 cut(s) | 388, 407, 950, 2186, 2504, 3258, 3632 |
| Csp6I | GTAC | 3 cut(s) | 448, 3248, 3918 |
| CviQI | GTAC | 3 cut(s) | 448, 3248, 3918 |
| DpnI | GATC | 8 cut(s) | 5, 640, 805, 1131, 1528, 1618, 3928, 4374 |
| DpnII | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| DraI | TTTAAA | 2 cut(s) | 3276, 3285 |
| DraIII | CACNNNGTG | 1 cut(s) | 2814 |
| Eam1104I | CTCTTC | 4 cut(s) | 1859, 3962, 4082, 4394 |
| EarI | CTCTTC | 4 cut(s) | 1859, 3962, 4082, 4394 |
| Eco130I | CCWWGG | 3 cut(s) | 431, 2242, 3922 |
| Eco47I | GGWCC | 3 cut(s) | 388, 950, 2504 |
| Eco81I | CCTNAGG | 2 cut(s) | 771, 837 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3163 |
| EcoO109I | RGGNCCY | 5 cut(s) | 950, 2186, 2504, 3258, 3632 |
| EcoRI | GAATTC | 4 cut(s) | 764, 1602, 2307, 3607 |
| EcoRII | CCWGG | 1 cut(s) | 599 |
| EcoT14I | CCWWGG | 3 cut(s) | 431, 2242, 3922 |
| EcoT22I | ATGCAT | 4 cut(s) | 1664, 3558, 4321, 4399 |
| ErhI | CCWWGG | 3 cut(s) | 431, 2242, 3922 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1413, 1445, 1841, 1873, 2027, 2059 |
| FaqI | GGGAC | 3 cut(s) | 436, 3167, 3206 |
| FauNDI | CATATG | 2 cut(s) | 590, 691 |
| HaeIII | GGCC | 4 cut(s) | 408, 2188, 3260, 3634 |
| HapII | CCGG | 1 cut(s) | 1142 |
| HincII | GTYRAC | 4 cut(s) | 1558, 2055, 2227, 4344 |
| HindII | GTYRAC | 4 cut(s) | 1558, 2055, 2227, 4344 |
| HpaI | GTTAAC | 2 cut(s) | 2055, 2227 |
| HpaII | CCGG | 1 cut(s) | 1142 |
| HphI | GGTGA | 7 cut(s) | 134, 1996, 3839, 3854, 3921, 4044, 4269 |
| Hpy166II | GTNNAC | 8 cut(s) | 715, 1159, 1558, 1752, 2055, 2227, 4125, 4344 |
| Hpy188I | TCNGA | 3 cut(s) | 2722, 3370, 3915 |
| Hpy8I | GTNNAC | 8 cut(s) | 715, 1159, 1558, 1752, 2055, 2227, 4125, 4344 |
| HpyCH4III | ACNGT | 2 cut(s) | 1030, 2584 |
| HpyCH4IV | ACGT | 3 cut(s) | 474, 1495, 1844 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 966, 1076, 2135, 2520, 3211, 3631 |
| HpySE526I | ACGT | 3 cut(s) | 474, 1495, 1844 |
| KspAI | GTTAAC | 2 cut(s) | 2055, 2227 |
| Kzo9I | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| LguI | GCTCTTC | 1 cut(s) | 1859 |
| LweI | GCATC | 4 cut(s) | 1658, 2380, 2908, 4245 |
| MaeII | ACGT | 3 cut(s) | 474, 1495, 1844 |
| MalI | GATC | 8 cut(s) | 5, 640, 805, 1131, 1528, 1618, 3928, 4374 |
| MboI | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| MfeI | CAATTG | 4 cut(s) | 843, 1105, 4192, 4332 |
| MflI | RGATCY | 1 cut(s) | 803 |
| MhlI | GDGCHC | 1 cut(s) | 2810 |
| MlyI | GAGTC | 3 cut(s) | 1203, 2354, 3120 |
| MmeI | TCCRAC | 6 cut(s) | 563, 829, 1887, 2151, 2260, 2931 |
| Mph1103I | ATGCAT | 4 cut(s) | 1664, 3558, 4321, 4399 |
| MslI | CAYNNNNRTG | 5 cut(s) | 902, 1657, 2456, 3214, 3879 |
| MspCI | CTTAAG | 2 cut(s) | 634, 1430 |
| MspI | CCGG | 1 cut(s) | 1142 |
| MspR9I | CCNGG | 2 cut(s) | 601, 1143 |
| MunI | CAATTG | 4 cut(s) | 843, 1105, 4192, 4332 |
| Mva1269I | GAATGC | 8 cut(s) | 42, 624, 1174, 1356, 1565, 3576, 4319, 4397 |
| MvaI | CCWGG | 1 cut(s) | 601 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 966, 1076, 2135, 2520, 3211, 3631 |
| NciI | CCSGG | 1 cut(s) | 1143 |
| NdeI | CATATG | 2 cut(s) | 590, 691 |
| NdeII | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| NheI | GCTAGC | 2 cut(s) | 1354, 2738 |
| NlaIV | GGNNCC | 5 cut(s) | 389, 437, 2635, 3153, 3633 |
| NmuCI | GTSAC | 5 cut(s) | 140, 1381, 3168, 3872, 4286 |
| NsiI | ATGCAT | 4 cut(s) | 1664, 3558, 4321, 4399 |
| PacI | TTAATTAA | 1 cut(s) | 3897 |
| PagI | TCATGA | 2 cut(s) | 1702, 4158 |
| PciI | ACATGT | 2 cut(s) | 651, 1378 |
| PciSI | GCTCTTC | 1 cut(s) | 1859 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1566 |
| PctI | GAATGC | 8 cut(s) | 42, 624, 1174, 1356, 1565, 3576, 4319, 4397 |
| Ple19I | CGATCG | 1 cut(s) | 1619 |
| PleI | GAGTC | 3 cut(s) | 1203, 2354, 3120 |
| PpsI | GAGTC | 3 cut(s) | 1203, 2354, 3120 |
| Ppu21I | YACGTR | 1 cut(s) | 1496 |
| PpuMI | RGGWCCY | 2 cut(s) | 950, 2504 |
| PscI | ACATGT | 2 cut(s) | 651, 1378 |
| PshBI | ATTAAT | 2 cut(s) | 3893, 3897 |
| PsiI | TTATAA | 5 cut(s) | 1625, 2982, 4266, 4298, 4352 |
| Psp1406I | AACGTT | 1 cut(s) | 474 |
| Psp5II | RGGWCCY | 2 cut(s) | 950, 2504 |
| Psp6I | CCWGG | 1 cut(s) | 599 |
| PspGI | CCWGG | 1 cut(s) | 599 |
| PspN4I | GGNNCC | 5 cut(s) | 389, 437, 2635, 3153, 3633 |
| PspPI | GGNCC | 7 cut(s) | 388, 407, 950, 2186, 2504, 3258, 3632 |
| PspPPI | RGGWCCY | 2 cut(s) | 950, 2504 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 587, 619, 1117, 1149 |
| PstI | CTGCAG | 1 cut(s) | 4074 |
| PsuI | RGATCY | 1 cut(s) | 803 |
| PvuI | CGATCG | 1 cut(s) | 1619 |
| RsaI | GTAC | 3 cut(s) | 449, 3249, 3919 |
| RsaNI | GTAC | 3 cut(s) | 448, 3248, 3918 |
| RseI | CAYNNNNRTG | 5 cut(s) | 902, 1657, 2456, 3214, 3879 |
| SapI | GCTCTTC | 1 cut(s) | 1859 |
| Sau3AI | GATC | 8 cut(s) | 3, 638, 803, 1129, 1526, 1616, 3926, 4372 |
| Sau96I | GGNCC | 7 cut(s) | 388, 407, 950, 2186, 2504, 3258, 3632 |
| ScaI | AGTACT | 1 cut(s) | 449 |
| SchI | GAGTC | 3 cut(s) | 1203, 2354, 3120 |
| ScrFI | CCNGG | 2 cut(s) | 601, 1143 |
| SduI | GDGCHC | 1 cut(s) | 2810 |
| SfaNI | GCATC | 4 cut(s) | 1658, 2380, 2908, 4245 |
| SfcI | CTRYAG | 2 cut(s) | 51, 4070 |
| SinI | GGWCC | 3 cut(s) | 388, 950, 2504 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 902, 1657, 2456, 3214, 3879 |
| SmlI | CTYRAG | 2 cut(s) | 634, 1430 |
| SmoI | CTYRAG | 2 cut(s) | 634, 1430 |
| SpeI | ACTAGT | 1 cut(s) | 1591 |
| SsiI | CCGC | 7 cut(s) | 1877, 1926, 1966, 1997, 2129, 3339, 3471 |
| StyD4I | CCNGG | 2 cut(s) | 599, 1141 |
| StyI | CCWWGG | 3 cut(s) | 431, 2242, 3922 |
| TaaI | ACNGT | 2 cut(s) | 1030, 2584 |
| TaiI | ACGT | 3 cut(s) | 477, 1498, 1847 |
| TaqI | TCGA | 3 cut(s) | 1716, 2299, 4253 |
| TatI | WGTACW | 1 cut(s) | 447 |
| TauI | GCSGC | 6 cut(s) | 1880, 1929, 2000, 2132, 3341, 3473 |
| TseFI | GTSAC | 5 cut(s) | 140, 1381, 3168, 3872, 4286 |
| Tsp45I | GTSAC | 5 cut(s) | 140, 1381, 3168, 3872, 4286 |
| Vha464I | CTTAAG | 2 cut(s) | 634, 1430 |
| VpaK11BI | GGWCC | 3 cut(s) | 388, 950, 2504 |
| VspI | ATTAAT | 2 cut(s) | 3893, 3897 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3163 |
| XbaI | TCTAGA | 4 cut(s) | 857, 2078, 3580, 3650 |
| XmaJI | CCTAGG | 2 cut(s) | 2242, 3922 |
| ZrmI | AGTACT | 1 cut(s) | 449 |
| Zsp2I | ATGCAT | 4 cut(s) | 1664, 3558, 4321, 4399 |