pycom01g01270

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
1200742 .. 1202372
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01270.2

Sequence Viewer

Length: 984 bp
ATGGCATGCACGGCTAGGCTTCCTTTCCTCTTCCTTGCTGCGGCACAAGTTGTGGGTGGTGGATTTGGGGGTTTTGAATGGTGTTGTGTATGGAGGTGTATGGAGTGGATGGAGGATGAAGAATGGAGGCTAGGGTGTTGCGGCAAGGTGTTTGGTGGTACGAATTTTTGGCTGATTTTATGTTTATATAGGATTAGGGCCCTAGGGTTCAGCACAAGCAAGTTAAATCCACTTAGGAGAGGGTTTGGCCCAATTAGTTTCATAAAAGGATTTAATCCAAAAGGAAAAAGGTTTAGGAAATTCGTCCAAAATTGGGCCTTCTGGAAACTAGGTGTTTTGTGGCTGATTTTGGGTTTTCTAGAAGAGATAAAAGGGGGAAGGGTGTTTTTAGGTCCACTTGCAGCTAGGATTAAGAAGAAAAGGTTGGATAAGGTTTTGGATAATGTTTCCGCTTTTGAGCTGATTCCTTATCCTCTTTATACAAGCTATCCACTTAGTGTCCAAAATTGCTCCAAAATGCACTTTCTTGGTACTTTAACCCATAGGACTTACAAACACACGAAATTGAGTTGCTCCTATCACACACTTGCATACAAATTGATTTCCAGTTGTTTTCCAATAAACCATGAACCTCAACACCCCAAATTGATCATGGAATACGCATCGGCAACCAAATTACTCTTCAATACATTAAGCTTTGTGAAAATCATAAGCATTGACAAGACATTCGTAACTATGAAAAGCATGATACTCCTACCAGGAATTTACTTAACACGATTTAAAACTCCCTTATATTCTAGCATCAAATTCATGTATTTCTTAATCAAACAGTTAAGTAAATTGTATTCACGATTTATGAAATCACAACTGAAAGCAATCAATTCATATTGCAAATATAATCATGGTTTCAAAAAACACTCTAGGTGGCTCCTCCTTCCTTCCTTGCTGCGGCACAATGGGGATTTTCTGAATTTAGGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

37.88

Weight (kDa)

9.96

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 41, 141, 450, 949
AcsI RAATTY 5 cut(s) 163, 299, 762, 806, 970
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 2 cut(s) 160, 532
AfiI CCNNNNNNNGG 3 cut(s) 40, 313, 948
AgsI TTSAA 3 cut(s) 77, 685, 910
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 665, 697
AluBI AGCT 4 cut(s) 404, 460, 486, 696
AluI AGCT 4 cut(s) 404, 460, 486, 696
AoxI GGCC 3 cut(s) 198, 247, 315
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 38, 401, 946
ApoI RAATTY 5 cut(s) 163, 299, 762, 806, 970
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AspA2I CCTAGG 1 cut(s) 202
AspS9I GGNCC 5 cut(s) 198, 199, 248, 315, 392
AvaII GGWCC 1 cut(s) 392
AvrII CCTAGG 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 25, 413, 933
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 759
BclI TGATCA 1 cut(s) 648
BfaI CTAG 8 cut(s) 15, 131, 203, 329, 359, 405, 798, 921
BisI GCNGC 6 cut(s) 39, 42, 142, 402, 947, 950
BlnI CCTAGG 1 cut(s) 202
BlsI GCNGC 6 cut(s) 40, 43, 143, 403, 948, 951
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 5 cut(s) 198, 199, 248, 315, 392
BmiI GGNNCC 2 cut(s) 200, 929
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 671, 810
BsaJI CCNNGG 1 cut(s) 202
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 313, 948
Bse1I ACTGG 1 cut(s) 606
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 114, 121
BseLI CCNNNNNNNGG 3 cut(s) 40, 313, 948
BseNI ACTGG 1 cut(s) 606
BseRI GAGGAG 1 cut(s) 920
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 3 cut(s) 25, 413, 933
BshFI GGCC 3 cut(s) 200, 249, 317
BslI CCNNNNNNNGG 3 cut(s) 40, 313, 948
BsnI GGCC 3 cut(s) 200, 249, 317
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 648
BspACI CCGC 4 cut(s) 41, 141, 450, 949
BspANI GGCC 3 cut(s) 200, 249, 317
BspLI GGNNCC 2 cut(s) 200, 929
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 648
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 3 cut(s) 35, 357, 686
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 233, 494
BstF5I GGATG 2 cut(s) 114, 121
BstKTI GATC 1 cut(s) 651
BstMBI GATC 1 cut(s) 648
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 757
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 25, 413, 933
BsuRI GGCC 3 cut(s) 200, 249, 317
BtsCI GGATG 2 cut(s) 114, 121
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 5 cut(s) 198, 199, 248, 315, 392
Csp6I GTAC 2 cut(s) 159, 531
CviAII CATG 6 cut(s) 6, 626, 652, 745, 811, 902
CviQI GTAC 2 cut(s) 159, 531
DdeI CTNAG 2 cut(s) 233, 494
DpnI GATC 1 cut(s) 650
DpnII GATC 1 cut(s) 648
DraI TTTAAA 1 cut(s) 781
DraIII CACNNNGTG 1 cut(s) 497
Eam1104I CTCTTC 3 cut(s) 35, 357, 686
EarI CTCTTC 3 cut(s) 35, 357, 686
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 198, 199
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 6 cut(s) 9, 629, 655, 748, 814, 905
FatI CATG 6 cut(s) 5, 625, 651, 744, 810, 901
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 6 cut(s) 39, 42, 142, 402, 947, 950
FokI GGATG 2 cut(s) 121, 128
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 6 cut(s) 39, 42, 142, 402, 947, 950
FspBI CTAG 8 cut(s) 15, 131, 203, 329, 359, 405, 798, 921
GluI GCNGC 6 cut(s) 39, 42, 142, 402, 947, 950
HaeIII GGCC 3 cut(s) 200, 249, 317
Hin1II CATG 6 cut(s) 9, 629, 655, 748, 814, 905
HindIII AAGCTT 1 cut(s) 694
HinfI GANTC 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 969
Hpy188III TCNNGA 4 cut(s) 322, 359, 849, 981
Hpy8I GTNNAC 1 cut(s) 395
HpyAV CCTTC 4 cut(s) 328, 372, 944, 948
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4V TGCA 5 cut(s) 9, 401, 520, 590, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 233, 494
Hsp92II CATG 6 cut(s) 9, 629, 655, 748, 814, 905
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 1 cut(s) 648
LmnI GCTCC 3 cut(s) 515, 578, 933
LpnPI CCDG 4 cut(s) 307, 619, 744, 771
Lsp1109I GCAGC 3 cut(s) 25, 413, 933
LweI GCATC 2 cut(s) 671, 810
MaeI CTAG 8 cut(s) 15, 131, 203, 329, 359, 405, 798, 921
MaeIII GTNAC 1 cut(s) 730
MalI GATC 1 cut(s) 650
MboI GATC 1 cut(s) 648
MboII GAAGA 5 cut(s) 22, 131, 374, 427, 673
MhlI GDGCHC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 8 cut(s) 38, 87, 106, 120, 233, 483, 642, 941
MseI TTAA 9 cut(s) 224, 273, 411, 536, 692, 770, 780, 821, 833
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 648
NlaIII CATG 6 cut(s) 9, 629, 655, 748, 814, 905
NlaIV GGNNCC 2 cut(s) 200, 929
NspI RCATGY 1 cut(s) 9
PaeI GCATGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 6 cut(s) 40, 43, 143, 403, 948, 951
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 2 cut(s) 200, 929
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 5 cut(s) 198, 199, 248, 315, 392
RsaI GTAC 2 cut(s) 160, 532
RsaNI GTAC 2 cut(s) 159, 531
SaqAI TTAA 9 cut(s) 224, 273, 411, 536, 692, 770, 780, 821, 833
SatI GCNGC 6 cut(s) 39, 42, 142, 402, 947, 950
Sau3AI GATC 1 cut(s) 648
Sau96I GGNCC 5 cut(s) 198, 199, 248, 315, 392
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 2 cut(s) 671, 810
SinI GGWCC 1 cut(s) 392
SphI GCATGC 1 cut(s) 9
SsiI CCGC 4 cut(s) 41, 141, 450, 949
SspMI CTAG 8 cut(s) 15, 131, 203, 329, 359, 405, 798, 921
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 831
TauI GCSGC 3 cut(s) 44, 144, 952
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 9 cut(s) 224, 273, 411, 536, 692, 770, 780, 821, 833
Tru9I TTAA 9 cut(s) 224, 273, 411, 536, 692, 770, 780, 821, 833
TseI GCWGC 3 cut(s) 38, 401, 946
TspDTI ATGAA 7 cut(s) 132, 250, 642, 752, 799, 872, 873
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 5 cut(s) 163, 299, 762, 806, 970
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XmaJI CCTAGG 1 cut(s) 202
XspI CTAG 8 cut(s) 15, 131, 203, 329, 359, 405, 798, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.