pycom12426g00200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
OG0000608
Physical Location & Seq
Forward (+)
113330 .. 114527
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00200.5

Sequence Viewer

Length: 840 bp
ATGTGGTTGCCTAAATCACATGTTCTAGAAGCCCTAGACATGTGCCGCACCTTACCTTCCTCTTCTCTCCTAAAATCTGCAAGATTATTCCTTTTCTCCCAAAATCTGCAAGTTTTGCACTTTCCCCTTCTTTTCCTCCCTTGTGCCGCAAGACTTATAAACACTTACCTATTTCTGAAAACAACCCTTGCCGTGCACTTCCTTGGACCATTCCTCTTCCTTGCCGTGCAAGGGGGAGGATTCTTTCCTATTTCTAGAGTCTTTGACTTAATTTCTGATTACCTAAATAACCTAGGTCATTCATTCACCATTCACGCCAGAAATTCATCCCCTCCCTCTAACACATCCATACTTCACCATTCTTCATACTTTCTGCCCAAAAACAACCCTTGCCCCCCAAAACTCACCATAACCCCTTGTGCCGCAGCAACTAGGAGAGGAAGGAAGCCTAAAACGTTTCATGCTTGCAGATTGGAGTGTTTTAGGTGTACTTCGTTCTTGTTTTCAATGTTTACTTTGCTATTACTTTCTAAGTTTGCTGTAATCATGAGTGGTTTGAAATATGAATTGATTTCTTCCAATTGTGATTTGTTAAGTTGTGATTGCAATTCAATTATCTGTTTATTAAAAACTTGTTTTCGTATGTTGATTAGGGATGCATACTTAGTCTTCATGCATAAACTCGATGCTATCACAACCGTGTTAATTGAATTCTTGGCAAGAGTTTCATGCTTTTCATATGTAGCTTTATTGTGCTTTTCACGTAAGGGACTTTTAGAGAATGTTTTGAGTTGTTGTATGCGCATTCCCATCCAATTCAATAACTTAAGGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.63

Weight (kDa)

9.45

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc16I TGCGCA 1 cut(s) 803
AciI CCGC 3 cut(s) 46, 147, 423
AclI AACGTT 1 cut(s) 455
AcsI RAATTY 2 cut(s) 322, 710
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 231
AflII CTTAAG 1 cut(s) 826
AflIII ACRYGT 2 cut(s) 19, 39
AgsI TTSAA 5 cut(s) 507, 559, 612, 710, 820
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 1 cut(s) 746
AluI AGCT 1 cut(s) 746
Alw21I GWGCWC 1 cut(s) 198
Alw44I GTGCAC 1 cut(s) 194
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 2 cut(s) 322, 710
AspA2I CCTAGG 1 cut(s) 292
AspLEI GCGC 1 cut(s) 804
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 298, 347, 397
AvaII GGWCC 1 cut(s) 206
AvrII CCTAGG 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 818
BceAI ACGGC 2 cut(s) 176, 209
BfaI CTAG 5 cut(s) 26, 35, 255, 293, 432
BfrI CTTAAG 1 cut(s) 826
BisI GCNGC 4 cut(s) 46, 147, 423, 426
BlnI CCTAGG 1 cut(s) 292
BlsI GCNGC 4 cut(s) 47, 148, 424, 427
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 2 cut(s) 646, 676
BpiI GAAGAC 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 764
BsaJI CCNNGG 2 cut(s) 202, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 202, 292
BseGI GGATG 4 cut(s) 326, 344, 661, 810
BseLI CCNNNNNNNGG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 198
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 783
BsmI GAATGC 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 198
BspACI CCGC 3 cut(s) 46, 147, 423
BspHI TCATGA 1 cut(s) 546
BspTI CTTAAG 1 cut(s) 826
BssECI CCNNGG 2 cut(s) 202, 292
BssT1I CCWWGG 2 cut(s) 202, 292
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 2 cut(s) 67, 221
BstAFI CTTAAG 1 cut(s) 826
BstAPI GCANNNNNTGC 1 cut(s) 115
BstBAI YACGTR 1 cut(s) 764
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 531, 664
BstF5I GGATG 4 cut(s) 326, 344, 661, 810
BstHHI GCGC 1 cut(s) 804
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNSI RCATGY 2 cut(s) 23, 43
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 661
BtsCI GGATG 4 cut(s) 326, 344, 661, 810
Cac8I GCNNGC 1 cut(s) 466
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 804
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 489
CviAII CATG 6 cut(s) 20, 40, 461, 547, 673, 729
CviJI RGCY 3 cut(s) 32, 448, 746
CviKI_1 RGCY 3 cut(s) 32, 448, 746
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 2 cut(s) 531, 664
Eam1104I CTCTTC 2 cut(s) 67, 221
EarI CTCTTC 2 cut(s) 67, 221
Eco130I CCWWGG 2 cut(s) 202, 292
Eco47I GGWCC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 202, 292
EcoT22I ATGCAT 2 cut(s) 661, 678
ErhI CCWWGG 2 cut(s) 202, 292
FaeI CATG 6 cut(s) 23, 43, 464, 550, 676, 732
FalI AAGNNNNNCTT 1 cut(s) 820
FaqI GGGAC 1 cut(s) 783
FatI CATG 6 cut(s) 19, 39, 460, 546, 672, 728
FauNDI CATATG 1 cut(s) 739
Fnu4HI GCNGC 4 cut(s) 46, 147, 423, 426
FokI GGATG 4 cut(s) 313, 331, 668, 797
Fsp4HI GCNGC 4 cut(s) 46, 147, 423, 426
FspAI RTGCGCAY 1 cut(s) 803
FspBI CTAG 5 cut(s) 26, 35, 255, 293, 432
FspI TGCGCA 1 cut(s) 803
GlaI GCGC 1 cut(s) 803
GluI GCNGC 4 cut(s) 46, 147, 423, 426
HhaI GCGC 1 cut(s) 804
Hin1II CATG 6 cut(s) 23, 43, 464, 550, 676, 732
Hin6I GCGC 1 cut(s) 802
HinP1I GCGC 1 cut(s) 802
HinfI GANTC 2 cut(s) 240, 258
HphI GGTGA 3 cut(s) 298, 347, 397
Hpy166II GTNNAC 3 cut(s) 196, 489, 513
Hpy188I TCNGA 2 cut(s) 177, 277
Hpy188III TCNNGA 3 cut(s) 26, 255, 547
Hpy8I GTNNAC 3 cut(s) 196, 489, 513
HpyAV CCTTC 3 cut(s) 66, 137, 435
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4IV ACGT 2 cut(s) 455, 763
HpyCH4V TGCA 9 cut(s) 80, 109, 118, 196, 229, 468, 606, 659, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 531, 664
HpySE526I ACGT 2 cut(s) 455, 763
Hsp92II CATG 6 cut(s) 23, 43, 464, 550, 676, 732
HspAI GCGC 1 cut(s) 802
LpnPI CCDG 1 cut(s) 331
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 2 cut(s) 646, 676
MaeI CTAG 5 cut(s) 26, 35, 255, 293, 432
MaeII ACGT 2 cut(s) 455, 763
MboII GAAGA 5 cut(s) 54, 208, 354, 567, 661
MfeI CAATTG 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 9 cut(s) 270, 322, 566, 580, 607, 612, 705, 710, 815
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 7 cut(s) 70, 146, 224, 230, 342, 346, 431
Mph1103I ATGCAT 2 cut(s) 661, 678
MseI TTAA 5 cut(s) 269, 593, 626, 704, 827
MslI CAYNNNNRTG 1 cut(s) 698
MspCI CTTAAG 1 cut(s) 826
MunI CAATTG 1 cut(s) 580
Mva1269I GAATGC 1 cut(s) 804
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeI CATATG 1 cut(s) 739
NlaIII CATG 6 cut(s) 23, 43, 464, 550, 676, 732
NsbI TGCGCA 1 cut(s) 803
NsiI ATGCAT 2 cut(s) 661, 678
NspI RCATGY 2 cut(s) 23, 43
OliI CACNNNNGTG 1 cut(s) 698
PagI TCATGA 1 cut(s) 546
PciI ACATGT 2 cut(s) 19, 39
PctI GAATGC 1 cut(s) 804
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 4 cut(s) 47, 148, 424, 427
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 764
PscI ACATGT 2 cut(s) 19, 39
PsiI TTATAA 1 cut(s) 158
Psp1406I AACGTT 1 cut(s) 455
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
RseI CAYNNNNRTG 1 cut(s) 698
SaqAI TTAA 5 cut(s) 269, 593, 626, 704, 827
SatI GCNGC 4 cut(s) 46, 147, 423, 426
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 267
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 646, 676
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
Sse9I AATT 9 cut(s) 270, 322, 566, 580, 607, 612, 705, 710, 815
SsiI CCGC 3 cut(s) 46, 147, 423
SspMI CTAG 5 cut(s) 26, 35, 255, 293, 432
StyI CCWWGG 2 cut(s) 202, 292
TaaI ACNGT 1 cut(s) 700
TaiI ACGT 2 cut(s) 458, 766
TaqI TCGA 1 cut(s) 684
TasI AATT 9 cut(s) 270, 322, 566, 580, 607, 612, 705, 710, 815
TatI WGTACW 1 cut(s) 488
TauI GCSGC 3 cut(s) 48, 149, 425
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 5 cut(s) 269, 593, 626, 704, 827
Tru9I TTAA 5 cut(s) 269, 593, 626, 704, 827
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 8 cut(s) 291, 315, 354, 449, 579, 661, 717, 726
Vha464I CTTAAG 1 cut(s) 826
VneI GTGCAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 2 cut(s) 322, 710
XbaI TCTAGA 2 cut(s) 25, 254
XceI RCATGY 2 cut(s) 23, 43
XmaJI CCTAGG 1 cut(s) 292
XspI CTAG 5 cut(s) 26, 35, 255, 293, 432
Zsp2I ATGCAT 2 cut(s) 661, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.