pycom12426g00120

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012426
Physical Location & Seq
Forward (+)
60790 .. 62131
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12426g00120.3

Sequence Viewer

Length: 933 bp
ATGCAATTGGAAATCGTTTTATTATGCAAGTGTAACATGTATGGAGATGAACCCCTTAGCTATTCTATCATCCATTCATTCCATTTCATCAATTTCATATTTACATTCTGTCTATTAGAAAGTGTATTAGTTTGTGTTTATAAGTGTTTTGATTCAATTTGTTTCACAAATTCGTCCAAATTCACCAAAGTGCTCAAAACTGCCCAGAAAGTTCTTTTGGTTTGTTTTAGTTGTTTTAAACTTTATTTTACGTTTTTGAATCAGTTTCCAAGTGATTTGCAATCCCTTCTAATCCCCGAGGGTTTAATTTGTGCACGTATAAATCTCGCATCAACTAGGATAGTGCAAGGGATCTTGGTTTGTGTCCTAAAATACATATGGTTAAACCAAAATAGGAAACCTTGGCTTAACTTTCCTACTTCAAGTAGGAAACCTTCTTTGACTAGGAATCCTTCTTTGATTAGGAATCCTTCTTTGACTAGGAATCCTTCTTTGATTAGGAATCTTACTTTGATTAGAAATCCTTCTTTGATTAGGAATCCTTCTTTGATTAGGAATCCTACTTTGATTAGGAATCCTAACATCTTTAAGTCTTCAATTTCGTTCATTCCTTTTGCTCCAAGCATATGCTATCCATTCCAAGCCCAATTTTGCTCCAAAATGCACCTTTTTGCTTCCTTAAAATGTACGAAAACAAGCCAACGAAATTTTGCTAGTCCTCGAGCAAAACAAAACAAAAGAAACAAAAAGAACACAACCAAAACAAAACAAAAGAAACAAAAAGAACACAACCAAAACAAAACAAAACACATTCTAAACCTTCCAACATGTACCTCAGGGATTTCCAACGAACATGACACATTAAAGAATATCATTCCCACGTTCACATTTAATCAATTAAAACAATGTTTTGAATGTAGTAACATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.77

Weight (kDa)

9.95

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 3 cut(s) 169, 179, 706
AfaI GTAC 2 cut(s) 688, 832
AflIII ACRYGT 2 cut(s) 36, 827
AgsI TTSAA 5 cut(s) 156, 259, 423, 597, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 2 cut(s) 195, 316
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 1 cut(s) 359
Ama87I CYCGRG 2 cut(s) 296, 720
ApaLI GTGCAC 1 cut(s) 312
ApoI RAATTY 3 cut(s) 169, 179, 706
Asp700I GAANNNNTTC 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 2 cut(s) 296, 720
AxyI CCTNAGG 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 316
BarI GAAGNNNNNNTAC 2 cut(s) 418, 450
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 2 cut(s) 195, 316
BfaI CTAG 4 cut(s) 336, 444, 480, 714
BmeT110I CYCGRG 2 cut(s) 296, 720
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 297, 401
Bse21I CCTNAGG 1 cut(s) 835
BseDI CCNNGG 2 cut(s) 297, 401
BseGI GGATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 849
BseSI GKGCMC 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 195, 316
BsiHKCI CYCGRG 2 cut(s) 296, 720
BsoBI CYCGRG 2 cut(s) 296, 720
Bsp1286I GDGCHC 2 cut(s) 195, 316
Bsp143I GATC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 848
BspPI GGATC 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 297, 401
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 56, 835, 930
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstNSI RCATGY 3 cut(s) 40, 831, 928
BstSLI GKGCMC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 835
BtsCI GGATG 1 cut(s) 69
Csp6I GTAC 2 cut(s) 687, 831
CviAII CATG 4 cut(s) 37, 828, 854, 925
CviJI RGCY 4 cut(s) 60, 406, 644, 699
CviKI_1 RGCY 4 cut(s) 60, 406, 644, 699
CviQI GTAC 2 cut(s) 687, 831
DdeI CTNAG 3 cut(s) 56, 835, 930
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
DraI TTTAAA 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 401
Eco81I CCTNAGG 1 cut(s) 835
Eco88I CYCGRG 2 cut(s) 296, 720
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 4 cut(s) 40, 831, 857, 928
FatI CATG 4 cut(s) 36, 827, 853, 924
FauNDI CATATG 2 cut(s) 377, 626
FokI GGATG 1 cut(s) 56
FspBI CTAG 4 cut(s) 336, 444, 480, 714
Hin1II CATG 4 cut(s) 40, 831, 857, 928
HinfI GANTC 9 cut(s) 152, 259, 448, 466, 484, 502, 538, 556, 574
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 314, 885
Hpy8I GTNNAC 2 cut(s) 314, 885
HpyAV CCTTC 8 cut(s) 296, 444, 462, 480, 498, 534, 552, 830
HpyCH4IV ACGT 3 cut(s) 251, 316, 881
HpyCH4V TGCA 6 cut(s) 4, 27, 280, 314, 346, 664
HpyF3I CTNAG 3 cut(s) 56, 835, 930
HpySE526I ACGT 3 cut(s) 251, 316, 881
Hsp92II CATG 4 cut(s) 40, 831, 857, 928
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 622, 659
LpnPI CCDG 2 cut(s) 218, 822
LweI GCATC 1 cut(s) 338
MaeI CTAG 4 cut(s) 336, 444, 480, 714
MaeII ACGT 3 cut(s) 251, 316, 881
MaeIII GTNAC 2 cut(s) 32, 920
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 1 cut(s) 585
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 2 cut(s) 195, 316
MmeI TCCRAC 2 cut(s) 848, 870
MnlI CCTC 3 cut(s) 292, 729, 844
MroXI GAANNNNTTC 1 cut(s) 523
MseI TTAA 9 cut(s) 237, 305, 383, 408, 588, 680, 863, 891, 899
MslI CAYNNNNRTG 1 cut(s) 188
MunI CAATTG 1 cut(s) 5
NdeI CATATG 2 cut(s) 377, 626
NdeII GATC 1 cut(s) 351
NlaIII CATG 4 cut(s) 40, 831, 857, 928
NspI RCATGY 3 cut(s) 40, 831, 928
OliI CACNNNNGTG 1 cut(s) 188
PaeR7I CTCGAG 1 cut(s) 720
PciI ACATGT 2 cut(s) 36, 827
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 9 cut(s) 152, 259, 448, 466, 484, 502, 538, 556, 574
Ppu21I YACGTR 1 cut(s) 317
PscI ACATGT 2 cut(s) 36, 827
PsiI TTATAA 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 720
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 2 cut(s) 688, 832
RsaNI GTAC 2 cut(s) 687, 831
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 9 cut(s) 237, 305, 383, 408, 588, 680, 863, 891, 899
Sau3AI GATC 1 cut(s) 351
SduI GDGCHC 2 cut(s) 195, 316
SetI ASST 9 cut(s) 62, 254, 319, 403, 436, 669, 822, 836, 884
SfaNI GCATC 1 cut(s) 338
Sfr274I CTCGAG 1 cut(s) 720
SlaI CTCGAG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
SspMI CTAG 4 cut(s) 336, 444, 480, 714
StyI CCWWGG 1 cut(s) 401
TaiI ACGT 3 cut(s) 254, 319, 884
TaqI TCGA 1 cut(s) 721
TfiI GAWTC 9 cut(s) 152, 259, 448, 466, 484, 502, 538, 556, 574
Tru1I TTAA 9 cut(s) 237, 305, 383, 408, 588, 680, 863, 891, 899
Tru9I TTAA 9 cut(s) 237, 305, 383, 408, 588, 680, 863, 891, 899
TspDTI ATGAA 5 cut(s) 63, 66, 76, 85, 595
VneI GTGCAC 1 cut(s) 312
XapI RAATTY 3 cut(s) 169, 179, 706
XceI RCATGY 3 cut(s) 40, 831, 928
XhoI CTCGAG 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 523
XspI CTAG 4 cut(s) 336, 444, 480, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.