pycom1256g00170

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001256
Physical Location & Seq
Forward (+)
127029 .. 130009
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1256g00170.17

Sequence Viewer

Length: 1995 bp
ATGAAAGCACATGATACTTATGCCAAGAATTTCCTTAACATGATTGTGACTAACAACCTTTACTACTTATCACCAAATTTATGCATGCAAATTAAGTGTGCACTCTCAACCCACATACACAAACAAGAAATCACAACTGGAAGTAATCAAATCATAATACTCACAAAACAAAGATTCTTGAATTTAAACATTGAAAACACAAGAAAGATTACACCTAAAACGTTCCAGCAATTCCAATACGAATGGCATGCACGTCCAAGGGCCCTCCTCCTTCTTCCTTGCTGCGGCACTTGGTGTGGTTGGTGGATGGCTGATTATGGTGAAGGGTTGCGGCATGTTGTAGATGGATGTGAATGGAGTATAATAGCACACAAATTAAACCCTCTTTTTGACAATTGTAGTATAGATATAACTAATGAAAATCGACTCAAAGATGTAAAAATATGCTTTAAAACACTTAAACACACTCAAAAGACTCTAACTAAACTTACTCTAAGACTCTATTTGGACGAAAATACACTTAGTTTTGATTCAAAAGACTTAAAAAGACACTTTTGGACAGATTTAGAACAAGTAAGAAAAGGGGGTTTGATTTTGGACGAATTGAAAAGAAAAACAAAAAAACCAATGGATGATGAACTAGCCAAGGGATACTTCTCCACACATGATACATTCAAACATAAATTGATTTCCAGTTTTATTGGATTGGATGACATCATACGACAACCCAAAGCATTCTTCAAAAGTCCCCTACATGACATCATAATAGAGATACAATCAAAGATCATTACATTCAATGGAAATCATAAGAATTTACTTAACATGATTGTGAAAACAACCGTAACTACTTATTCTAGCACCAAATTCAAGCATTTATCCATCAAACGGTTAAGTAAATTGCATTCACAATTTATGAAATCACAACTGGAATTTATCAACTCATATTATAAACGTAATCATGGTTTCAAAATTACACCTAAAAACGTTTCAACACTTCAACTCGAATGCATAAACGTCCAAGGCTTCGTCTTCCTTCTCCTCCTCCTTGCTAAGTCATGGCACAAGAGTCTAGGGAAGGTAGGGTGGTGCGGCAAGGGTTATGGGCGGTGTATGGAGGCTTGGATGAAGGTTTGGAAGTATGGGAATGGTGGAAAGTTGGATGGAAGGCTGCGGCAAAGGATTGGGTGCGGCATAGGGTATTTATATGGAAGAAAGAATCCTAAGGCTTTATTACTTAGTTTAGGGAAAGAAATAACTCCAAATCCTTCAAGAATAGGAAACACAAAGTCAGAAAATCCAAAGGAAAGGCAAAACTCACGGCAAAGGAGTGCAAGAAAGGGAATGCTCTTTATTTTTGAAATTAGGCAAGGATTTTGGTTTAGAAAAGGGTATGTGAATTATGGAAAGAAGGCCCTCCCTTGCACGGCAAGGAAGGGAAATACTAAGGGGATACACGGCAAGGATTTTGGTTTGCAAGGAAACATTGTCTTGTGTCCTAGAATAGGTAGAATAAACCAAAATAGGAAACCTTGGCTTAACTTTCCTACTTCAAGTAGGAAACCTTCTTTGACTAGGATTCCTCATTTGATTAGGAATCCTCTTGTGATTAGGAATCCTAACTCCTTTAGGTCTTCAATTTCGTCCATTCGTTTTGCTCCAAGCATAAGCTATCCATTCCAAGTCCAATTTTGCTCCAAAATGCTCCAAAATGCATCTTTTTGCTTCCTTAGCCATGGGAACCTAAAAACACACGAAAATGGCTTAAACTACCAAAACAACTATGAACTAACAACATATATGCATGAAAACAAGCTAAGTAAGTCGCCTAAATATCAAAACAAAACAAAAGAAACCAAAAACAAACCAAAACACATTCTAAACCTTCCAACATGTACCTCAGGGATTTCAAACGATCATGACACAATAAAGAACATCATTCCCACGTTCACATTTAATCAATTAAAACAATGTTTTGAATGTAGTAACATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

665

Amino Acids

76.89

Weight (kDa)

9.95

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AciI CCGC 6 cut(s) 285, 331, 1089, 1105, 1171, 1188
AclI AACGTT 2 cut(s) 221, 984
AcsI RAATTY 6 cut(s) 28, 76, 181, 811, 863, 929
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 1 cut(s) 1894
AfiI CCNNNNNNNGG 4 cut(s) 284, 885, 1423, 1502
AflIII ACRYGT 1 cut(s) 1889
AjiI CACGTC 1 cut(s) 254
AjuI GAANNNNNNNTTGG 4 cut(s) 638, 670, 722, 754
AluBI AGCT 2 cut(s) 1668, 1813
AluI AGCT 2 cut(s) 1668, 1813
Alw21I GWGCWC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 99
AoxI GGCC 2 cut(s) 261, 1410
ApaI GGGCCC 1 cut(s) 265
ApaLI GTGCAC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 282, 1168
ApoI RAATTY 6 cut(s) 28, 76, 181, 811, 863, 929
AspS9I GGNCC 3 cut(s) 261, 262, 1411
AsuHPI GGTGA 2 cut(s) 63, 332
AxyI CCTNAGG 2 cut(s) 1221, 1897
BaeGI GKGCMC 2 cut(s) 103, 265
BanII GRGCYC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 1546, 1578
BbsI GAAGAC 2 cut(s) 1021, 1623
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 269, 1155
BccI CCATC 4 cut(s) 301, 338, 887, 1154
BceAI ACGGC 3 cut(s) 1334, 1440, 1471
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciVI GTATCC 2 cut(s) 644, 1443
BfaI CTAG 5 cut(s) 641, 855, 1070, 1497, 1572
BfuI GTATCC 2 cut(s) 644, 1443
BisI GCNGC 7 cut(s) 283, 286, 332, 1090, 1169, 1172, 1189
BlsI GCNGC 7 cut(s) 284, 287, 333, 1091, 1170, 1173, 1190
BmgBI CACGTC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 261, 262, 1411
BmiI GGNNCC 2 cut(s) 263, 1739
BmsI GCATC 1 cut(s) 1721
BpiI GAAGAC 2 cut(s) 1021, 1623
Bpu10I CCTNAGC 1 cut(s) 1727
BsaJI CCNNGG 5 cut(s) 257, 645, 1018, 1529, 1732
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 885, 1423, 1502
Bse1I ACTGG 3 cut(s) 142, 693, 930
Bse21I CCTNAGG 2 cut(s) 1221, 1897
BseDI CCNNGG 5 cut(s) 257, 645, 1018, 1529, 1732
BseGI GGATG 6 cut(s) 312, 353, 637, 715, 1128, 1165
BseLI CCNNNNNNNGG 4 cut(s) 284, 885, 1423, 1502
BseMII CTCAG 1 cut(s) 1911
BseNI ACTGG 3 cut(s) 142, 693, 930
BseRI GAGGAG 3 cut(s) 257, 1028, 1031
BseSI GKGCMC 2 cut(s) 103, 265
BseXI GCAGC 2 cut(s) 269, 1155
BshFI GGCC 2 cut(s) 263, 1412
BsiHKAI GWGCWC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 4 cut(s) 284, 885, 1423, 1502
BsmFI GGGAC 1 cut(s) 732
BsmI GAATGC 4 cut(s) 734, 901, 1010, 1347
BsnI GGCC 2 cut(s) 263, 1412
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 103, 265
Bsp143I GATC 2 cut(s) 783, 1912
Bsp19I CCATGG 1 cut(s) 1732
BspACI CCGC 6 cut(s) 285, 331, 1089, 1105, 1171, 1188
BspANI GGCC 2 cut(s) 263, 1412
BspCNI CTCAG 1 cut(s) 1910
BspHI TCATGA 1 cut(s) 1915
BspLI GGNNCC 2 cut(s) 263, 1739
BsrI ACTGG 3 cut(s) 142, 693, 930
BssECI CCNNGG 5 cut(s) 257, 645, 1018, 1529, 1732
BssMI GATC 2 cut(s) 783, 1912
BssT1I CCWWGG 5 cut(s) 257, 645, 1018, 1529, 1732
Bst4CI ACNGT 2 cut(s) 841, 888
BstC8I GCNNGC 2 cut(s) 86, 249
BstDSI CCRYGG 1 cut(s) 1732
BstENI CCTNNNNNAGG 1 cut(s) 1500
BstF5I GGATG 6 cut(s) 312, 353, 637, 715, 1128, 1165
BstKTI GATC 2 cut(s) 786, 1915
BstMBI GATC 2 cut(s) 783, 1912
BstMWI GCNNNNNNNGC 1 cut(s) 1728
BstNSI RCATGY 5 cut(s) 88, 251, 338, 1893, 1990
BstSLI GKGCMC 2 cut(s) 103, 265
BstV1I GCAGC 2 cut(s) 269, 1155
BstV2I GAAGAC 2 cut(s) 1021, 1623
Bsu36I CCTNAGG 2 cut(s) 1221, 1897
BsuI GTATCC 2 cut(s) 644, 1443
BsuRI GGCC 2 cut(s) 263, 1412
BtgI CCRYGG 1 cut(s) 1732
BtrI CACGTC 1 cut(s) 254
BtsCI GGATG 6 cut(s) 312, 353, 637, 715, 1128, 1165
Cac8I GCNNGC 2 cut(s) 86, 249
CciI TCATGA 1 cut(s) 1915
Cfr13I GGNCC 3 cut(s) 261, 262, 1411
Csp6I GTAC 1 cut(s) 1893
CviQI GTAC 1 cut(s) 1893
DpnI GATC 2 cut(s) 785, 1914
DpnII GATC 2 cut(s) 783, 1912
DraI TTTAAA 2 cut(s) 186, 451
DraIII CACNNNGTG 1 cut(s) 294
Eco130I CCWWGG 5 cut(s) 257, 645, 1018, 1529, 1732
Eco24I GRGCYC 1 cut(s) 265
Eco81I CCTNAGG 2 cut(s) 1221, 1897
EcoNI CCTNNNNNAGG 1 cut(s) 1500
EcoO109I RGGNCCY 3 cut(s) 261, 262, 1411
EcoT14I CCWWGG 5 cut(s) 257, 645, 1018, 1529, 1732
EcoT22I ATGCAT 4 cut(s) 86, 1010, 1714, 1803
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 5 cut(s) 257, 645, 1018, 1529, 1732
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FaqI GGGAC 1 cut(s) 732
Fnu4HI GCNGC 7 cut(s) 283, 286, 332, 1090, 1169, 1172, 1189
FokI GGATG 6 cut(s) 319, 360, 644, 722, 1135, 1172
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 7 cut(s) 283, 286, 332, 1090, 1169, 1172, 1189
FspBI CTAG 5 cut(s) 641, 855, 1070, 1497, 1572
GluI GCNGC 7 cut(s) 283, 286, 332, 1090, 1169, 1172, 1189
HaeIII GGCC 2 cut(s) 263, 1412
HphI GGTGA 2 cut(s) 63, 332
Hpy166II GTNNAC 2 cut(s) 101, 1947
Hpy188I TCNGA 1 cut(s) 1291
Hpy188III TCNNGA 3 cut(s) 178, 1269, 1916
Hpy8I GTNNAC 2 cut(s) 101, 1947
HpyCH4III ACNGT 2 cut(s) 841, 888
HpyCH4IV ACGT 6 cut(s) 221, 253, 952, 984, 1014, 1943
HpyF10VI GCNNNNNNNGC 1 cut(s) 1728
HpySE526I ACGT 6 cut(s) 221, 253, 952, 984, 1014, 1943
Kzo9I GATC 2 cut(s) 783, 1912
LmnI GCTCC 3 cut(s) 1660, 1697, 1707
LpnPI CCDG 5 cut(s) 123, 239, 706, 911, 1884
Lsp1109I GCAGC 2 cut(s) 269, 1155
LweI GCATC 1 cut(s) 1721
MaeI CTAG 5 cut(s) 641, 855, 1070, 1497, 1572
MaeII ACGT 6 cut(s) 221, 253, 952, 984, 1014, 1943
MaeIII GTNAC 3 cut(s) 46, 841, 1982
MalI GATC 2 cut(s) 785, 1914
MboI GATC 2 cut(s) 783, 1912
MboII GAAGA 5 cut(s) 266, 730, 1021, 1221, 1623
MfeI CAATTG 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 103, 265
MlyI GAGTC 4 cut(s) 420, 469, 492, 1075
MmeI TCCRAC 2 cut(s) 1137, 1910
Mph1103I ATGCAT 4 cut(s) 86, 1010, 1714, 1803
MslI CAYNNNNRTG 3 cut(s) 44, 827, 1755
MunI CAATTG 1 cut(s) 394
Mva1269I GAATGC 4 cut(s) 734, 901, 1010, 1347
MwoI GCNNNNNNNGC 1 cut(s) 1728
NcoI CCATGG 1 cut(s) 1732
NdeII GATC 2 cut(s) 783, 1912
NlaIV GGNNCC 2 cut(s) 263, 1739
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 4 cut(s) 86, 1010, 1714, 1803
NspI RCATGY 5 cut(s) 88, 251, 338, 1893, 1990
PaeI GCATGC 2 cut(s) 88, 251
PagI TCATGA 1 cut(s) 1915
PciI ACATGT 1 cut(s) 1889
PctI GAATGC 4 cut(s) 734, 901, 1010, 1347
PfeI GAWTC 6 cut(s) 174, 530, 1216, 1576, 1594, 1612
PkrI GCNGC 7 cut(s) 284, 287, 333, 1091, 1170, 1173, 1190
PleI GAGTC 4 cut(s) 420, 469, 492, 1074
PpsI GAGTC 4 cut(s) 420, 469, 492, 1074
PscI ACATGT 1 cut(s) 1889
PsiI TTATAA 1 cut(s) 948
Psp1406I AACGTT 2 cut(s) 221, 984
PspN4I GGNNCC 2 cut(s) 263, 1739
PspOMI GGGCCC 1 cut(s) 261
PspPI GGNCC 3 cut(s) 261, 262, 1411
RsaI GTAC 1 cut(s) 1894
RsaNI GTAC 1 cut(s) 1893
RseI CAYNNNNRTG 3 cut(s) 44, 827, 1755
SatI GCNGC 7 cut(s) 283, 286, 332, 1090, 1169, 1172, 1189
Sau3AI GATC 2 cut(s) 783, 1912
Sau96I GGNCC 3 cut(s) 261, 262, 1411
SchI GAGTC 4 cut(s) 420, 469, 492, 1075
SduI GDGCHC 2 cut(s) 103, 265
SfaNI GCATC 1 cut(s) 1721
SmiMI CAYNNNNRTG 3 cut(s) 44, 827, 1755
SphI GCATGC 2 cut(s) 88, 251
SsiI CCGC 6 cut(s) 285, 331, 1089, 1105, 1171, 1188
SspMI CTAG 5 cut(s) 641, 855, 1070, 1497, 1572
StyI CCWWGG 5 cut(s) 257, 645, 1018, 1529, 1732
TaaI ACNGT 2 cut(s) 841, 888
TaiI ACGT 6 cut(s) 224, 256, 955, 987, 1017, 1946
TaqI TCGA 2 cut(s) 424, 1002
TauI GCSGC 5 cut(s) 288, 334, 1092, 1174, 1191
TfiI GAWTC 6 cut(s) 174, 530, 1216, 1576, 1594, 1612
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 282, 1168
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 7 cut(s) 17, 432, 651, 929, 1139, 1797, 1818
VneI GTGCAC 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 1500
XapI RAATTY 6 cut(s) 28, 76, 181, 811, 863, 929
XceI RCATGY 5 cut(s) 88, 251, 338, 1893, 1990
XspI CTAG 5 cut(s) 641, 855, 1070, 1497, 1572
Zsp2I ATGCAT 4 cut(s) 86, 1010, 1714, 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.