Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

34664534 .. 34669292

Gene Structure 4759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1214000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCCCATATTGGTGCCATATTCGGAAACTCTGCACGCTTCAACTTTTTGTCCCTCGAAAATCGAGGGTTTTGCTCCTCTAAGAAGGGAGGTGGTAGGGTTGTTGGTGCAGTCCCTGAAGGTAGCTACGGAGGAGCTTTCAACATTAGTGATTATGTGACTTTCCTTAGTCCACTTGATCTCCAGGGATTGACCAAGCGCATGAAGAGAGTTAGCAAGACTGTCGACCAACTACTCGAAAAGATAATTCAGAATCATGAACAAGTTTCCAGAAGTGAACAGGTACACGGCAATCATCATAAGGACTTTGTAGACGTGCTGTTTTCATTAATCAACCAACCATTAAACCCCAACGATGAGGAAGTCTACATGCTCGAACGAACAAATGCCAAAGCCATTTTACTCGACATAATTGCGGGTGCCTTTGACACCTCAGCCACGGCGATTGTCTGGACCCTGGCCGAACTCTTGAGACTGTTGTGCGGAAGCCCGAAAGGTGATGGCCACTTGGCCACAATTCAACAGAGACACCCGAAAGTAATAAAACATTTCCAAGAAGAGCTCCAGAGTGTGATCGGGATGGATCGAATGATGAAAGAAAGTGATTTGCCAAAGCTGGATTACTTGAGCATGCTGGTCAAGGAGAGCTTAATAAATATCTTACACTTAAGGCTACACCCAGTTGCCTCATTACTAGTCCCTCGTGAATTCATGGAGGACATTACAGTTGATGGATATAACATACCCAATAAATCAAGAGCCTTTATCAATATTTGGACCATTGGGAGGGATCCAAGTGTATGGTCAGATAATGTGGAAGAATTCTACCCTGAAAGGTTAATGAATAATAACGTTGACCTACTTGGACATGACTTCCAGCTCAGGTCTGGTCGAAGAGGGTGCCCTGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

305

Amino Acids

34.23

Weight (kDa)

6.42

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	56 - 158	8.5e-11	Cytochrome P450
p450	PF00067	176 - 292	4.3e-25	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	14, 419, 900
AccI	GTMKAC	3 cut(s)	225, 312, 366
AciI	CCGC	2 cut(s)	416, 483
AclI	AACGTT	1 cut(s)	852
AclWI	GGATC	3 cut(s)	591, 785, 798
AcoI	YGGCCR	3 cut(s)	459, 502, 510
AcsI	RAATTY	2 cut(s)	707, 821
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	786
AflII	CTTAAG	1 cut(s)	667
AgsI	TTSAA	3 cut(s)	43, 142, 521
AhlI	ACTAGT	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	183, 456
AluBI	AGCT	6 cut(s)	126, 137, 562, 616, 648, 880
AluI	AGCT	6 cut(s)	126, 137, 562, 616, 648, 880
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	2 cut(s)	466, 520
AlwI	GGATC	3 cut(s)	591, 785, 798
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	4 cut(s)	3, 459, 502, 510
ApoI	RAATTY	2 cut(s)	707, 821
AseI	ATTAAT	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	3 cut(s)	4, 453, 777
AsuHPI	GGTGA	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	453, 777
BaeGI	GKGCMC	1 cut(s)	905
BalI	TGGCCA	2 cut(s)	504, 512
BamHI	GGATCC	1 cut(s)	790
BanI	GGYRCC	3 cut(s)	14, 419, 900
BanII	GRGCYC	1 cut(s)	564
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	494, 574, 725
BceAI	ACGGC	2 cut(s)	304, 456
BcgI	CGANNNNNNTGC	7 cut(s)	54, 88, 205, 239, 395, 429, 882
BciT130I	CCWGG	2 cut(s)	185, 458
BcoDI	GTCTC	2 cut(s)	466, 520
BcuI	ACTAGT	1 cut(s)	694
BfaI	CTAG	1 cut(s)	695
BfrI	CTTAAG	1 cut(s)	667
Bme1390I	CCNGG	2 cut(s)	185, 458
Bme18I	GGWCC	2 cut(s)	453, 777
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	3 cut(s)	4, 453, 777
BmiI	GGNNCC	5 cut(s)	16, 421, 455, 792, 902
BmrFI	CCNGG	2 cut(s)	185, 458
BmrI	ACTGGG	1 cut(s)	674
BmuI	ACTGGG	1 cut(s)	674
BpmI	CTGGAG	2 cut(s)	167, 548
Bpu10I	CCTNAGC	2 cut(s)	433, 881
BpuEI	CTTGAG	2 cut(s)	490, 646
BsaJI	CCNNGG	3 cut(s)	184, 438, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	786
Bse1I	ACTGG	1 cut(s)	680
BseBI	CCWGG	2 cut(s)	185, 458
BseDI	CCNNGG	3 cut(s)	184, 438, 456
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	786
BseMII	CTCAG	2 cut(s)	447, 895
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	2 cut(s)	67, 147
BseSI	GKGCMC	1 cut(s)	905
BsgI	GTGCAG	2 cut(s)	18, 129
BshFI	GGCC	4 cut(s)	5, 461, 504, 512
BshNI	GGYRCC	3 cut(s)	14, 419, 900
BsiHKAI	GWGCWC	1 cut(s)	564
BslFI	GGGAC	3 cut(s)	37, 98, 683
BslI	CCNNNNNNNGG	1 cut(s)	786
BsmAI	GTCTC	2 cut(s)	466, 520
BsmFI	GGGAC	3 cut(s)	37, 98, 683
BsnI	GGCC	4 cut(s)	5, 461, 504, 512
Bsp1286I	GDGCHC	2 cut(s)	564, 905
Bsp143I	GATC	4 cut(s)	178, 573, 583, 790
BspACI	CCGC	2 cut(s)	416, 483
BspANI	GGCC	4 cut(s)	5, 461, 504, 512
BspCNI	CTCAG	2 cut(s)	446, 894
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	5 cut(s)	16, 421, 455, 792, 902
BspPI	GGATC	3 cut(s)	591, 785, 798
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	3 cut(s)	14, 419, 900
BspTI	CTTAAG	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	3 cut(s)	184, 438, 456
BssMI	GATC	4 cut(s)	178, 573, 583, 790
BssSI	CACGAG	1 cut(s)	702
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	185, 458
Bst4CI	ACNGT	3 cut(s)	223, 477, 727
Bst6I	CTCTTC	3 cut(s)	200, 552, 889
BstAFI	CTTAAG	1 cut(s)	667
BstC8I	GCNNGC	2 cut(s)	37, 632
BstDEI	CTNAG	4 cut(s)	81, 167, 433, 881
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	4 cut(s)	181, 576, 586, 793
BstMAI	GTCTC	2 cut(s)	466, 520
BstMBI	GATC	4 cut(s)	178, 573, 583, 790
BstNI	CCWGG	2 cut(s)	185, 458
BstNSI	RCATGY	2 cut(s)	373, 634
BstSCI	CCNGG	2 cut(s)	183, 456
BstSLI	GKGCMC	1 cut(s)	905
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	4 cut(s)	5, 461, 504, 512
BtgI	CCRYGG	1 cut(s)	438
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	37, 632
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	3 cut(s)	4, 453, 777
Csp6I	GTAC	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	6 cut(s)	202, 257, 370, 631, 712, 869
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	4 cut(s)	81, 167, 433, 881
DpnI	GATC	4 cut(s)	180, 575, 585, 792
DpnII	GATC	4 cut(s)	178, 573, 583, 790
EaeI	YGGCCR	3 cut(s)	459, 502, 510
Eam1104I	CTCTTC	3 cut(s)	200, 552, 889
EarI	CTCTTC	3 cut(s)	200, 552, 889
Ecl136II	GAGCTC	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	2 cut(s)	453, 777
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	562
EcoRI	GAATTC	2 cut(s)	707, 821
EcoRII	CCWGG	2 cut(s)	183, 456
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	6 cut(s)	205, 260, 373, 634, 715, 872
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	3 cut(s)	37, 98, 683
FatI	CATG	6 cut(s)	201, 256, 369, 630, 711, 868
FauI	CCCGC	1 cut(s)	409
FblI	GTMKAC	3 cut(s)	225, 312, 366
FokI	GGATG	1 cut(s)	592
FriOI	GRGCYC	1 cut(s)	564
FspBI	CTAG	1 cut(s)	695
GlaI	GCGC	1 cut(s)	200
GsuI	CTGGAG	2 cut(s)	167, 548
HaeIII	GGCC	4 cut(s)	5, 461, 504, 512
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	205, 260, 373, 634, 715, 872
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	2 cut(s)	226, 856
HindII	GTYRAC	2 cut(s)	226, 856
HinfI	GANTC	1 cut(s)	253
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	7 cut(s)	173, 226, 278, 286, 313, 367, 856
Hpy188I	TCNGA	3 cut(s)	26, 252, 808
Hpy188III	TCNNGA	8 cut(s)	257, 270, 451, 469, 565, 577, 704, 756
Hpy8I	GTNNAC	7 cut(s)	173, 226, 278, 286, 313, 367, 856
HpyAV	CCTTC	2 cut(s)	79, 113
HpyCH4III	ACNGT	3 cut(s)	223, 477, 727
HpyCH4IV	ACGT	2 cut(s)	315, 852
HpyCH4V	TGCA	2 cut(s)	35, 110
HpyF3I	CTNAG	4 cut(s)	81, 167, 433, 881
HpySE526I	ACGT	2 cut(s)	315, 852
Hsp92II	CATG	6 cut(s)	205, 260, 373, 634, 715, 872
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	178, 573, 583, 790
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	3 cut(s)	80, 134, 567
MaeI	CTAG	1 cut(s)	695
MaeII	ACGT	2 cut(s)	315, 852
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	180, 575, 585, 792
MboI	GATC	4 cut(s)	178, 573, 583, 790
MboII	GAAGA	4 cut(s)	217, 569, 830, 906
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	2 cut(s)	564, 905
MlsI	TGGCCA	2 cut(s)	504, 512
MluCI	AATT	5 cut(s)	246, 411, 516, 707, 821
MluNI	TGGCCA	2 cut(s)	504, 512
Mox20I	TGGCCA	2 cut(s)	504, 512
MscI	TGGCCA	2 cut(s)	504, 512
MseI	TTAA	5 cut(s)	329, 344, 650, 668, 839
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	2 cut(s)	504, 512
MspCI	CTTAAG	1 cut(s)	667
MspR9I	CCNGG	2 cut(s)	185, 458
MvaI	CCWGG	2 cut(s)	185, 458
NdeII	GATC	4 cut(s)	178, 573, 583, 790
NlaIII	CATG	6 cut(s)	205, 260, 373, 634, 715, 872
NlaIV	GGNNCC	5 cut(s)	16, 421, 455, 792, 902
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	2 cut(s)	373, 634
PaeI	GCATGC	1 cut(s)	634
PagI	TCATGA	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	564
Psp1406I	AACGTT	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	183, 456
PspGI	CCWGG	2 cut(s)	183, 456
PspN4I	GGNNCC	5 cut(s)	16, 421, 455, 792, 902
PspPI	GGNCC	3 cut(s)	4, 453, 777
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	564
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	329, 344, 650, 668, 839
Sau3AI	GATC	4 cut(s)	178, 573, 583, 790
Sau96I	GGNCC	3 cut(s)	4, 453, 777
ScrFI	CCNGG	2 cut(s)	185, 458
SduI	GDGCHC	2 cut(s)	564, 905
SinI	GGWCC	2 cut(s)	453, 777
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	3 cut(s)	469, 625, 667
SmoI	CTYRAG	3 cut(s)	469, 625, 667
SpeI	ACTAGT	1 cut(s)	694
SphI	GCATGC	1 cut(s)	634
Sse9I	AATT	5 cut(s)	246, 411, 516, 707, 821
SsiI	CCGC	2 cut(s)	416, 483
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	1 cut(s)	695
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	183, 456
TaaI	ACNGT	3 cut(s)	223, 477, 727
TaiI	ACGT	2 cut(s)	318, 855
TaqI	TCGA	8 cut(s)	57, 64, 225, 237, 375, 405, 586, 892
TasI	AATT	5 cut(s)	246, 411, 516, 707, 821
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	5 cut(s)	329, 344, 650, 668, 839
Tru9I	TTAA	5 cut(s)	329, 344, 650, 668, 839
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	6 cut(s)	218, 273, 315, 608, 700, 857
TspGWI	ACGGA	1 cut(s)	144
Vha464I	CTTAAG	1 cut(s)	667
VpaK11BI	GGWCC	2 cut(s)	453, 777
VspI	ATTAAT	1 cut(s)	329
XapI	RAATTY	2 cut(s)	707, 821
XceI	RCATGY	2 cut(s)	373, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	884
XmiI	GTMKAC	3 cut(s)	225, 312, 366
XspI	CTAG	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.