Rorug06G0466500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
59091134 .. 59091912
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0466500.1

Sequence Viewer

Length: 480 bp
ATGGAAGCTGATAAGATTGATGCATTGCCCGGACAACCAGCTGAAGGTGTTGATTTTAATCAGTATGCATGGGAGCTATGTGCCTATGTTACAGTTGATCCTAGCGCTGGGAGAGCATTGTTCTACTACTATTTTGTGGAGTCACCCCAAAATTCTTCAACCAAACCTTTGGTGTTGTGGTTAAATGGAGGACCAGGATGCTCATCTCTTGGGTATGGAGCCATGGAAGAGATAGGACCTTCCAGGGTCAACAGTGATGGAAAGACACTCTTCCAAAATGACTTTGCTTGGAATAATGGTAAACACAATTTTTTGTTTTTGTTCTTGGAACAACAACAATTAAGCAAAGGCGAATGTGCTCTTCTTGGAGTCTCCGGCAGGAGTTGGCTTCTCATAACTGACTATAAAGTGGGTGACAACAAAACGGCTTGGGACTCTTATACATTTCTTGTAAACTGGTTAGAGAGATTTCCAGTATAA

Protein Analysis

159

Amino Acids

17.81

Weight (kDa)

4.57

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 18 - 158 9.7e-32 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 63
AfeI AGCGCT 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 44, 107
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 2 cut(s) 193, 242
AluBI AGCT 3 cut(s) 8, 41, 76
AluI AGCT 3 cut(s) 8, 41, 76
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 106
ApoI RAATTY 1 cut(s) 151
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 191, 236
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 135, 425
AvaII GGWCC 2 cut(s) 191, 236
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 441
BciT130I CCWGG 2 cut(s) 195, 244
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 108
Bme1390I CCNGG 3 cut(s) 30, 195, 244
Bme18I GGWCC 2 cut(s) 191, 236
BmgT120I GGNCC 2 cut(s) 191, 236
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 3 cut(s) 30, 195, 244
BmsI GCATC 2 cut(s) 10, 188
BpuMI CCSGG 1 cut(s) 30
BsaBI GATNNNNATC 2 cut(s) 57, 202
BsaJI CCNNGG 2 cut(s) 222, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 107
Bse1I ACTGG 2 cut(s) 461, 473
Bse3DI GCAATG 1 cut(s) 23
Bse8I GATNNNNATC 2 cut(s) 57, 202
BseBI CCWGG 2 cut(s) 195, 244
BseDI CCNNGG 2 cut(s) 222, 243
BseGI GGATG 1 cut(s) 203
BseJI GATNNNNATC 2 cut(s) 57, 202
BseLI CCNNNNNNNGG 2 cut(s) 44, 107
BseMI GCAATG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 461, 473
BseYI CCCAGC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 2 cut(s) 30, 375
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 44, 107
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 23
BsrI ACTGG 2 cut(s) 461, 473
BssECI CCNNGG 2 cut(s) 222, 243
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 195, 244
Bst4CI ACNGT 2 cut(s) 94, 254
Bst6I CTCTTC 3 cut(s) 222, 275, 366
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 195, 244
BstSCI CCNGG 3 cut(s) 28, 193, 242
BstXI CCANNNNNNTGG 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 259
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 191, 236
CviAII CATG 2 cut(s) 69, 223
CviJI RGCY 6 cut(s) 8, 41, 76, 221, 388, 428
CviKI_1 RGCY 6 cut(s) 8, 41, 76, 221, 388, 428
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 222, 275, 366
EarI CTCTTC 3 cut(s) 222, 275, 366
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 191, 236
Eco47III AGCGCT 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 193, 242
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 2 cut(s) 25, 70
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 72, 226
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 1 cut(s) 446
FatI CATG 2 cut(s) 68, 222
FokI GGATG 1 cut(s) 210
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 106
GsaI CCCAGC 1 cut(s) 111
HaeII RGCGCY 1 cut(s) 108
HapII CCGG 2 cut(s) 30, 375
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 72, 226
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 3 cut(s) 140, 369, 434
HpaII CCGG 2 cut(s) 30, 375
HphI GGTGA 2 cut(s) 135, 425
Hpy166II GTNNAC 3 cut(s) 250, 302, 454
Hpy8I GTNNAC 3 cut(s) 250, 302, 454
HpyAV CCTTC 2 cut(s) 38, 249
HpyCH4III ACNGT 2 cut(s) 94, 254
HpyCH4V TGCA 2 cut(s) 23, 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 72, 226
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 73, 218
LweI GCATC 2 cut(s) 10, 188
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 88, 141, 413
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 147, 239, 262, 353
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 3 cut(s) 151, 307, 338
MlyI GAGTC 3 cut(s) 149, 378, 428
MnlI CCTC 1 cut(s) 182
Mph1103I ATGCAT 2 cut(s) 25, 70
MseI TTAA 3 cut(s) 57, 182, 341
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 2 cut(s) 30, 375
MspR9I CCNGG 3 cut(s) 30, 195, 244
MvaI CCWGG 2 cut(s) 195, 244
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 72, 226
NlaIV GGNNCC 1 cut(s) 220
NmuCI GTSAC 2 cut(s) 141, 413
NsiI ATGCAT 2 cut(s) 25, 70
PciSI GCTCTTC 1 cut(s) 366
PleI GAGTC 3 cut(s) 148, 377, 428
PpsI GAGTC 3 cut(s) 148, 377, 428
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 2 cut(s) 193, 242
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 2 cut(s) 193, 242
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 191, 236
PspPPI RGGWCCY 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 57, 182, 341
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 191, 236
SchI GAGTC 3 cut(s) 149, 378, 428
ScrFI CCNGG 3 cut(s) 30, 195, 244
SduI GDGCHC 1 cut(s) 361
SetI ASST 6 cut(s) 10, 43, 49, 78, 169, 241
SfaNI GCATC 2 cut(s) 10, 188
SinI GGWCC 2 cut(s) 191, 236
Sse9I AATT 3 cut(s) 151, 307, 338
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 28, 193, 242
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 94, 254
TasI AATT 3 cut(s) 151, 307, 338
Tru1I TTAA 3 cut(s) 57, 182, 341
Tru9I TTAA 3 cut(s) 57, 182, 341
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 141, 413
Tsp45I GTSAC 2 cut(s) 141, 413
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 191, 236
XapI RAATTY 1 cut(s) 151
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 2 cut(s) 25, 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.