Rroxscaffold_3G00269210

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
62125182 .. 62127153
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269210.1

Sequence Viewer

Length: 861 bp
ATGCCAGACAACCTCCCCCATCGAAGCCTCCAACACCTGGCCAAAAAATATGGACACATCATGTCCATCCGTCTAGGCAGTGTTCCGACCGTAGTAGTCTCCTCCCCCAAAGCCGCAGAGCTATTCCTCAAAACTCATGACACTAATTTCGCCAGCCGGCCGGCCCAAAATCCATGCCTCGGAGGCTCGGAGTACATATCCTACGGCACAAAGGGCATGGCCTTTTCCGAATATGGTCCCTATTGGCGCCATGTAAGGAAGCTCTGTACGCTTCAGCTTTTCTGTCCAGCAAAAATAGAGGCTTTCGCGCCGCTGAGAAAGGATGAGCTGGGAGTGCTGCTGAGAAAGCTCAAGAAAGCTGCAGAGGAAGGTGGTGTTGTGGATGTTAGTGAGGATATTGGTGTGATGAATGAGGACATTACGTACAGGATGGTGTTGGGTTGTAAAAGGGATGATCAGTTTGATTTGAAAGCCATTCTCTCTTCAGCCGTCTCACCAGCGCTCCAGCTCCTCCTTTCTCAGCTGCGCGAAACCCTCCATTGTCGCCAGATAAAAAAGCTGTTGTGTACAGAGCTTCCTTACATGGATCCAATTAATAAGGACCATATTCGGAAAAGGCCATACCCTTTGTGCCGTAGGGAGACTATTATGGTAGGAACATTGCCTACAGGAATGGACATGATGGGTGATGGGTCCATATTTTTTGACCTAGTGCTGGAGGCTTCGATAGGGGAGGTTGCCTTAGCATGTGGAGTTGAGGGAGATAATGGGGAATATGGGTCACGACAAGCTCAGGTACTCATTTATACTAATGGATCAGCCCTGGAAATGGACTTTTCAGCTGGGCGTTGTACTTCATAA

Protein Analysis

286

Amino Acids

31.68

Weight (kDa)

7.56

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 153 5.4e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 37
AccII CGCG 2 cut(s) 308, 528
AciI CCGC 2 cut(s) 114, 311
AclWI GGATC 3 cut(s) 581, 594, 823
AcoI YGGCCR 2 cut(s) 39, 158
AcuI CTGAAG 2 cut(s) 257, 468
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 6 cut(s) 194, 268, 425, 568, 798, 853
AfeI AGCGCT 1 cut(s) 501
AfiI CCNNNNNNNGG 4 cut(s) 37, 179, 715, 829
AgsI TTSAA 1 cut(s) 469
AjnI CCWGG 2 cut(s) 36, 822
Alw26I GTCTC 3 cut(s) 103, 496, 635
AlwI GGATC 3 cut(s) 581, 594, 823
Aor51HI AGCGCT 1 cut(s) 501
AoxI GGCC 5 cut(s) 39, 158, 162, 219, 617
ApeKI GCWGC 3 cut(s) 337, 359, 523
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 594
AspLEI GCGC 4 cut(s) 249, 310, 502, 528
AspS9I GGNCC 4 cut(s) 163, 236, 601, 693
AsuHPI GGTGA 2 cut(s) 486, 698
AvaII GGWCC 3 cut(s) 236, 601, 693
BalI TGGCCA 1 cut(s) 41
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 324, 346, 510
BccI CCATC 5 cut(s) 27, 74, 424, 676, 683
BceAI ACGGC 3 cut(s) 220, 473, 618
BciT130I CCWGG 2 cut(s) 38, 824
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 3 cut(s) 103, 496, 635
BfaI CTAG 2 cut(s) 74, 710
BfmI CTRYAG 2 cut(s) 360, 666
BfoI RGCGCY 2 cut(s) 250, 503
BglI GCCNNNNNGGC 1 cut(s) 183
BisI GCNGC 5 cut(s) 114, 311, 338, 360, 524
BlsI GCNGC 5 cut(s) 115, 312, 339, 361, 525
Bme1390I CCNGG 2 cut(s) 38, 824
Bme18I GGWCC 3 cut(s) 236, 601, 693
BmgT120I GGNCC 4 cut(s) 163, 236, 601, 693
BmiI GGNNCC 4 cut(s) 238, 248, 588, 694
BmrFI CCNGG 2 cut(s) 38, 824
BpmI CTGGAG 2 cut(s) 488, 737
Bpu10I CCTNAGC 2 cut(s) 742, 792
BpuEI CTTGAG 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 178, 822
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 179, 715, 829
Bse118I RCCGGY 2 cut(s) 156, 160
Bse3DI GCAATG 1 cut(s) 659
BseBI CCWGG 2 cut(s) 38, 824
BseDI CCNNGG 2 cut(s) 178, 822
BseGI GGATG 5 cut(s) 66, 328, 388, 435, 457
BseLI CCNNNNNNNGG 4 cut(s) 37, 179, 715, 829
BseMI GCAATG 1 cut(s) 659
BseMII CTCAG 4 cut(s) 305, 332, 533, 806
BseRI GAGGAG 2 cut(s) 91, 500
BseX3I CGGCCG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 324, 346, 510
BseYI CCCAGC 2 cut(s) 328, 842
Bsh1236I CGCG 2 cut(s) 308, 528
Bsh1285I CGRYCG 2 cut(s) 90, 161
BshFI GGCC 5 cut(s) 41, 160, 164, 221, 619
BshNI GGYRCC 1 cut(s) 246
BsiEI CGRYCG 2 cut(s) 90, 161
BsiSI CCGG 2 cut(s) 157, 161
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 4 cut(s) 37, 179, 715, 829
BsmAI GTCTC 3 cut(s) 103, 496, 635
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 5 cut(s) 41, 160, 164, 221, 619
Bsp1407I TGTACA 1 cut(s) 566
Bsp143I GATC 3 cut(s) 454, 586, 815
BspACI CCGC 2 cut(s) 114, 311
BspANI GGCC 5 cut(s) 41, 160, 164, 221, 619
BspCNI CTCAG 4 cut(s) 306, 333, 532, 805
BspFNI CGCG 2 cut(s) 308, 528
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 4 cut(s) 238, 248, 588, 694
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 3 cut(s) 581, 594, 823
BspT107I GGYRCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 659
BsrFI RCCGGY 2 cut(s) 156, 160
BsrGI TGTACA 1 cut(s) 566
BssAI RCCGGY 2 cut(s) 156, 160
BssECI CCNNGG 2 cut(s) 178, 822
BssMI GATC 3 cut(s) 454, 586, 815
BssNI GRCGYC 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 38, 824
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 247
BstAUI TGTACA 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 154, 158, 162
BstDEI CTNAG 5 cut(s) 314, 341, 519, 742, 792
BstF5I GGATG 5 cut(s) 66, 328, 388, 435, 457
BstFNI CGCG 2 cut(s) 308, 528
BstH2I RGCGCY 2 cut(s) 250, 503
BstHHI GCGC 4 cut(s) 249, 310, 502, 528
BstKTI GATC 3 cut(s) 457, 589, 818
BstMAI GTCTC 3 cut(s) 103, 496, 635
BstMBI GATC 3 cut(s) 454, 586, 815
BstMCI CGRYCG 2 cut(s) 90, 161
BstMWI GCNNNNNNNGC 5 cut(s) 183, 213, 268, 334, 346
BstNI CCWGG 2 cut(s) 38, 824
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 36, 822
BstSFI CTRYAG 2 cut(s) 360, 666
BstSNI TACGTA 1 cut(s) 423
BstUI CGCG 2 cut(s) 308, 528
BstV1I GCAGC 3 cut(s) 324, 346, 510
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 5 cut(s) 41, 160, 164, 221, 619
BtsCI GGATG 5 cut(s) 66, 328, 388, 435, 457
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 154, 158, 162
CciI TCATGA 1 cut(s) 136
CfoI GCGC 4 cut(s) 249, 310, 502, 528
Cfr10I RCCGGY 2 cut(s) 156, 160
Cfr13I GGNCC 4 cut(s) 163, 236, 601, 693
Csp6I GTAC 6 cut(s) 193, 267, 424, 567, 797, 852
CviAII CATG 8 cut(s) 61, 137, 174, 217, 251, 583, 679, 747
CviQI GTAC 6 cut(s) 193, 267, 424, 567, 797, 852
DdeI CTNAG 5 cut(s) 314, 341, 519, 742, 792
DinI GGCGCC 1 cut(s) 248
DpnI GATC 3 cut(s) 456, 588, 817
DpnII GATC 3 cut(s) 454, 586, 815
EaeI YGGCCR 2 cut(s) 39, 158
EagI CGGCCG 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
EclXI CGGCCG 1 cut(s) 158
Eco105I TACGTA 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 236, 601, 693
Eco47III AGCGCT 1 cut(s) 501
Eco52I CGGCCG 1 cut(s) 158
Eco57I CTGAAG 2 cut(s) 257, 468
EcoRII CCWGG 2 cut(s) 36, 822
EgeI GGCGCC 1 cut(s) 248
EheI GGCGCC 1 cut(s) 248
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 8 cut(s) 64, 140, 177, 220, 254, 586, 682, 750
FaqI GGGAC 1 cut(s) 222
FatI CATG 8 cut(s) 60, 136, 173, 216, 250, 582, 678, 746
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 5 cut(s) 114, 311, 338, 360, 524
FokI GGATG 5 cut(s) 53, 335, 395, 442, 464
FseI GGCCGGCC 1 cut(s) 164
Fsp4HI GCNGC 5 cut(s) 114, 311, 338, 360, 524
FspBI CTAG 2 cut(s) 74, 710
GlaI GCGC 4 cut(s) 248, 309, 501, 527
GluI GCNGC 5 cut(s) 114, 311, 338, 360, 524
GsaI CCCAGC 2 cut(s) 332, 846
GsuI CTGGAG 2 cut(s) 488, 737
HaeII RGCGCY 2 cut(s) 250, 503
HaeIII GGCC 5 cut(s) 41, 160, 164, 221, 619
HapII CCGG 2 cut(s) 157, 161
HhaI GCGC 4 cut(s) 249, 310, 502, 528
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 8 cut(s) 64, 140, 177, 220, 254, 586, 682, 750
Hin6I GCGC 4 cut(s) 247, 308, 500, 526
HinP1I GCGC 4 cut(s) 247, 308, 500, 526
HpaII CCGG 2 cut(s) 157, 161
HphI GGTGA 2 cut(s) 486, 698
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 5 cut(s) 87, 182, 190, 229, 612
Hpy188III TCNNGA 3 cut(s) 137, 352, 783
Hpy8I GTNNAC 1 cut(s) 567
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 213, 268, 334, 346
HpyF3I CTNAG 5 cut(s) 314, 341, 519, 742, 792
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 8 cut(s) 64, 140, 177, 220, 254, 586, 682, 750
HspAI GCGC 4 cut(s) 247, 308, 500, 526
KasI GGCGCC 1 cut(s) 246
KroI GCCGGC 2 cut(s) 156, 160
KroNI GCCGGC 2 cut(s) 158, 162
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 454, 586, 815
LmnI GCTCC 2 cut(s) 507, 513
Lsp1109I GCAGC 3 cut(s) 324, 346, 510
MaeI CTAG 2 cut(s) 74, 710
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 780
MalI GATC 3 cut(s) 456, 588, 817
MboI GATC 3 cut(s) 454, 586, 815
MboII GAAGA 1 cut(s) 474
MflI RGATCY 1 cut(s) 586
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 2 cut(s) 145, 591
MluNI TGGCCA 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 55, 110
Mox20I TGGCCA 1 cut(s) 41
MroNI GCCGGC 2 cut(s) 156, 160
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 3 cut(s) 313, 523, 842
MspI CCGG 2 cut(s) 157, 161
MspR9I CCNGG 2 cut(s) 38, 824
MvaI CCWGG 2 cut(s) 38, 824
MvnI CGCG 2 cut(s) 308, 528
MwoI GCNNNNNNNGC 5 cut(s) 183, 213, 268, 334, 346
NaeI GCCGGC 2 cut(s) 158, 162
NarI GGCGCC 1 cut(s) 247
NdeII GATC 3 cut(s) 454, 586, 815
NgoMIV GCCGGC 2 cut(s) 156, 160
NlaIII CATG 8 cut(s) 64, 140, 177, 220, 254, 586, 682, 750
NlaIV GGNNCC 4 cut(s) 238, 248, 588, 694
NmuCI GTSAC 1 cut(s) 780
NspI RCATGY 1 cut(s) 750
PagI TCATGA 1 cut(s) 136
PdiI GCCGGC 2 cut(s) 158, 162
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 5 cut(s) 115, 312, 339, 361, 525
PluTI GGCGCC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 36, 822
PspFI CCCAGC 2 cut(s) 328, 842
PspGI CCWGG 2 cut(s) 36, 822
PspN4I GGNNCC 4 cut(s) 238, 248, 588, 694
PspPI GGNCC 4 cut(s) 163, 236, 601, 693
PsrI GAACNNNNNNTAC 2 cut(s) 649, 681
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 2 cut(s) 523, 842
RigI GGCCGGCC 1 cut(s) 164
RsaI GTAC 6 cut(s) 194, 268, 425, 568, 798, 853
RsaNI GTAC 6 cut(s) 193, 267, 424, 567, 797, 852
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 5 cut(s) 114, 311, 338, 360, 524
Sau3AI GATC 3 cut(s) 454, 586, 815
Sau96I GGNCC 4 cut(s) 163, 236, 601, 693
ScrFI CCNGG 2 cut(s) 38, 824
SfcI CTRYAG 2 cut(s) 360, 666
SfoI GGCGCC 1 cut(s) 248
SinI GGWCC 3 cut(s) 236, 601, 693
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SnaBI TACGTA 1 cut(s) 423
Sse9I AATT 2 cut(s) 145, 591
SsiI CCGC 2 cut(s) 114, 311
SspDI GGCGCC 1 cut(s) 246
SspMI CTAG 2 cut(s) 74, 710
StyD4I CCNGG 2 cut(s) 36, 822
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 425
TaqI TCGA 2 cut(s) 22, 725
TasI AATT 2 cut(s) 145, 591
TatI WGTACW 3 cut(s) 192, 566, 851
TauI GCSGC 2 cut(s) 116, 313
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 3 cut(s) 337, 359, 523
Tsp45I GTSAC 1 cut(s) 780
TspDTI ATGAA 2 cut(s) 422, 846
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 3 cut(s) 236, 601, 693
VspI ATTAAT 1 cut(s) 594
XceI RCATGY 1 cut(s) 750
XspI CTAG 2 cut(s) 74, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.