Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

43561953 .. 43562342

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCAGAAAGAATGAGTCCTTCAACAATAATGACCATCCTCCTGGTTCTACTCACATGCCTTTGGTCACTCATCTTTGCCTCCTCAAAATCAAAACACAGAAAACTACCACCCGGCCCTCGGTCACTGCCAATAACGGGAAACCTCCATATGCTAGTCAACCTCCCCCATCGAAGCCTCCAACAATTGGCCAAAAAATATGGACACATTATGTCCATTCGTCTAGGCAATGTTTCTACCATAGTAGTCTCCTCCCCACAAGCCGCAGAGCTATTCCTCAAAACTCATGACACTAATTTCGCCAATCGGCCCAAAATCCAAGCCTCAGAGTACCTGGCCTATGGCACAAAGGGCATGGCCTTATCCACTGGGCATGACTACCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

129

Amino Acids

14.34

Weight (kDa)

10.14

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 126	1.4e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	187
AciI	CCGC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	189
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	120, 137, 187
AgsI	TTSAA	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	42, 333
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	253
AoxI	GGCC	5 cut(s)	115, 189, 308, 336, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	2 cut(s)	116, 309
AsuC2I	CCSGG	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	191
BccI	CCATC	2 cut(s)	44, 177
BciT130I	CCWGG	2 cut(s)	44, 335
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	2 cut(s)	155, 224
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	3 cut(s)	44, 114, 335
BmgT120I	GGNCC	2 cut(s)	116, 309
BmrFI	CCNGG	3 cut(s)	44, 114, 335
BmrI	ACTGGG	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 137, 187
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	44, 335
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	120, 137, 187
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	73, 241
BshFI	GGCC	5 cut(s)	117, 191, 310, 338, 359
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	120, 137, 187
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	5 cut(s)	117, 191, 310, 338, 359
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	5 cut(s)	117, 191, 310, 338, 359
BspCNI	CTCAG	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	44, 335
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNI	CCWGG	2 cut(s)	44, 335
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	42, 112, 333
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	5 cut(s)	117, 191, 310, 338, 359
BtsCI	GGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	125, 366
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	116, 309
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	57, 287, 355, 374
CviJI	RGCY	9 cut(s)	117, 177, 191, 263, 271, 310, 323, 338, 359
CviKI_1	RGCY	9 cut(s)	117, 177, 191, 263, 271, 310, 323, 338, 359
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	42, 333
FaeI	CATG	4 cut(s)	60, 290, 358, 377
FatI	CATG	4 cut(s)	56, 286, 354, 373
FauNDI	CATATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	155, 224
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	5 cut(s)	117, 191, 310, 338, 359
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	4 cut(s)	60, 290, 358, 377
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	60, 290, 358, 377
LpnPI	CCDG	7 cut(s)	18, 29, 56, 127, 320, 347, 354
MaeI	CTAG	2 cut(s)	155, 224
MaeIII	GTNAC	2 cut(s)	66, 123
MfeI	CAATTG	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	2 cut(s)	185, 295
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	205
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	191
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	3 cut(s)	44, 114, 335
MunI	CAATTG	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	44, 335
MwoI	GCNNNNNNNGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	150
NlaIII	CATG	4 cut(s)	60, 290, 358, 377
NmuCI	GTSAC	2 cut(s)	66, 123
NspI	RCATGY	1 cut(s)	60
PagI	TCATGA	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	42, 333
PspGI	CCWGG	2 cut(s)	42, 333
PspPI	GGNCC	2 cut(s)	116, 309
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	116, 309
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	44, 114, 335
SetI	ASST	4 cut(s)	147, 165, 273, 336
Sse9I	AATT	2 cut(s)	185, 295
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	2 cut(s)	155, 224
StyD4I	CCNGG	3 cut(s)	42, 112, 333
TaqI	TCGA	1 cut(s)	172
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	185, 295
TauI	GCSGC	1 cut(s)	266
TscAI	CASTG	2 cut(s)	132, 373
TseFI	GTSAC	2 cut(s)	66, 123
Tsp45I	GTSAC	2 cut(s)	66, 123
TspRI	CASTG	2 cut(s)	132, 373
Van91I	CCANNNNNTGG	1 cut(s)	187
XceI	RCATGY	1 cut(s)	60
XspI	CTAG	2 cut(s)	155, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.