Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

43370915 .. 43371408

Gene Structure 494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGATATTAGTGATAAAATTGGTGTGCTTATTGAGGATATAATGTATAGGATGATAGTGGGTCGCAAAAAGAATGATTGGTTTGATATGAACGAGATTATTAAGGAGGCTATATCATTGTTTAGAGCATTCAACATAGCTGATTATGTGCCATTCCTCAGTCCATTTGATTTTCAGATATATGGATTGACCAAGAGCTTAAAGAAAGATAGCAAAAGAATCGATCAACTCTTGGAGAAGATAATTGAGGAGCATGAAGCTAACACTAGGAGGGGAAACATGGCTAGCATGAGGACTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

100

Amino Acids

11.79

Weight (kDa)

6.58

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	3 cut(s)	140, 198, 260
AluI	AGCT	3 cut(s)	140, 198, 260
AsuNHI	GCTAGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BfaI	CTAG	2 cut(s)	267, 285
BmtI	GCTAGC	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	288
BssMI	GATC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	222
CviAII	CATG	3 cut(s)	254, 280, 289
CviJI	RGCY	5 cut(s)	110, 140, 198, 260, 284
CviKI_1	RGCY	5 cut(s)	110, 140, 198, 260, 284
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
FaeI	CATG	3 cut(s)	257, 283, 292
FatI	CATG	3 cut(s)	253, 279, 288
FokI	GGATG	1 cut(s)	64
FspBI	CTAG	2 cut(s)	267, 285
Hin1II	CATG	3 cut(s)	257, 283, 292
HinfI	GANTC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	257, 283, 292
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	267, 285
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	250
MluCI	AATT	2 cut(s)	18, 243
MnlI	CCTC	6 cut(s)	28, 100, 167, 241, 264, 285
MseI	TTAA	2 cut(s)	102, 200
Mva1269I	GAATGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	223
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	257, 283, 292
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	102, 200
Sau3AI	GATC	1 cut(s)	223
SetI	ASST	3 cut(s)	142, 200, 262
SgeI	CNNG	7 cut(s)	106, 205, 244, 266, 279, 292, 297
Sse9I	AATT	2 cut(s)	18, 243
SspMI	CTAG	2 cut(s)	267, 285
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	18, 243
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	102, 200
Tru9I	TTAA	2 cut(s)	102, 200
TspDTI	ATGAA	2 cut(s)	104, 270
XspI	CTAG	2 cut(s)	267, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.