RLG00000004935

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
63796762 .. 63797391
630 bp
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UTR
Exon/CDS
Intron
RLM00000004935

Sequence Viewer

Length: 603 bp
ATGACCCATATTTCCCATTATCTCTCTCAACTCCACACGAAACAAAAAGCCAGAAATAATGAGTCCTTCAAGAATAATAGTCATCCTCCTGGTTGTCCTCACATGCCTTTGGTCACTCGTCTCTGCCTCCTCAAAATCAAAAGTTCAAAACACGAAAAAACTACCACCCGGCCCTCAGTCACTGCCAATAATCGGAAACATCCACATGCTAAAGCAACCTCCCCTATCGAAGCCTCCAACACTTGGACAAAAAATATAGACCCATCACCCATCATGCCCATTCGTCTAGGCAATGTTCCTACCATAATAGTCTCCTCCCCAAAAGCCGCAGAGTTATTCCTCAAAGCTCACGACACTAATTTCGCCAGTCGGTCCAAAATCCAAGCATCGGAGTACATACCCTACGGCATAAAGGGCATGGCCTTTTCTGAATATGGTCATTATTGGTGCCATGTAAGGAAGCTCTGTACGCAACAGCTTTTTTGTCTGGTGAAAATGGAGGGTTTCGCGCTGCTGAGAAAGGAGGAGCTGGGAGCTCTGGTGAGAAGGCTAAAGAGAGTTGCAGAGGAAGGTGGAGTTGTGGATGTTAGAATATTGGTGTGA

Protein Analysis

201

Amino Acids

22.56

Weight (kDa)

9.92

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 197 1.6e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 447
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 1 cut(s) 509
AciI CCGC 1 cut(s) 327
AfaI GTAC 2 cut(s) 395, 469
AfiI CCNNNNNNNGG 3 cut(s) 192, 243, 388
AgsI TTSAA 2 cut(s) 70, 147
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 5 cut(s) 347, 463, 478, 529, 536
AluI AGCT 5 cut(s) 347, 463, 478, 529, 536
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 2 cut(s) 125, 316
AlwNI CAGNNNCTG 1 cut(s) 182
AoxI GGCC 2 cut(s) 170, 420
ApeKI GCWGC 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 2 cut(s) 171, 372
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 258, 502, 553
AvaII GGWCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 538
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 498
BccI CCATC 2 cut(s) 271, 278
BceAI ACGGC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 125, 316
BfaI CTAG 1 cut(s) 287
BisI GCNGC 2 cut(s) 327, 512
BlsI GCNGC 2 cut(s) 328, 513
Bme1390I CCNGG 2 cut(s) 90, 169
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 171, 372
BmiI GGNNCC 1 cut(s) 449
BmrFI CCNGG 2 cut(s) 90, 169
BmsI GCATC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 243, 388
Bse1I ACTGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 90
BseGI GGATG 3 cut(s) 82, 199, 589
BseLI CCNNNNNNNGG 3 cut(s) 192, 243, 388
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 189, 506
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 3 cut(s) 119, 304, 539
BseXI GCAGC 1 cut(s) 498
BseYI CCCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 2 cut(s) 172, 422
BshNI GGYRCC 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 192, 243, 388
BsmAI GTCTC 2 cut(s) 125, 316
BsmBI CGTCTC 1 cut(s) 125
BsnI GGCC 2 cut(s) 172, 422
Bsp1286I GDGCHC 1 cut(s) 538
BspACI CCGC 1 cut(s) 327
BspANI GGCC 2 cut(s) 172, 422
BspCNI CTCAG 2 cut(s) 188, 507
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 175, 515
BstF5I GGATG 3 cut(s) 82, 199, 589
BstFNI CGCG 1 cut(s) 509
BstHHI GCGC 1 cut(s) 511
BstMAI GTCTC 2 cut(s) 125, 316
BstMWI GCNNNNNNNGC 2 cut(s) 414, 469
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 2 cut(s) 106, 209
BstSCI CCNGG 2 cut(s) 88, 167
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 498
BsuRI GGCC 2 cut(s) 172, 422
BtsCI GGATG 3 cut(s) 82, 199, 589
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 171, 372
Csp6I GTAC 2 cut(s) 394, 468
CviAII CATG 5 cut(s) 103, 206, 274, 418, 452
CviQI GTAC 2 cut(s) 394, 468
DdeI CTNAG 2 cut(s) 175, 515
Ecl136II GAGCTC 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 5 cut(s) 106, 209, 277, 421, 455
FatI CATG 5 cut(s) 102, 205, 273, 417, 451
Fnu4HI GCNGC 2 cut(s) 327, 512
FokI GGATG 3 cut(s) 69, 186, 596
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 327, 512
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 510
GluI GCNGC 2 cut(s) 327, 512
GsaI CCCAGC 1 cut(s) 533
HaeIII GGCC 2 cut(s) 172, 422
HapII CCGG 1 cut(s) 169
HhaI GCGC 1 cut(s) 511
Hin1II CATG 5 cut(s) 106, 209, 277, 421, 455
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 169
HphI GGTGA 3 cut(s) 258, 502, 553
Hpy188I TCNGA 3 cut(s) 195, 391, 430
Hpy188III TCNNGA 2 cut(s) 70, 350
HpyAV CCTTC 3 cut(s) 76, 540, 563
HpyCH4V TGCA 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 414, 469
HpyF3I CTNAG 2 cut(s) 175, 515
Hsp92II CATG 5 cut(s) 106, 209, 277, 421, 455
HspAI GCGC 1 cut(s) 509
LmnI GCTCC 2 cut(s) 526, 533
LpnPI CCDG 8 cut(s) 64, 75, 102, 182, 379, 473, 515, 524
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 1 cut(s) 395
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 112, 178
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 90, 169
MvaI CCWGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 414, 469
NciI CCSGG 1 cut(s) 169
NlaIII CATG 5 cut(s) 106, 209, 277, 421, 455
NlaIV GGNNCC 1 cut(s) 449
NmuCI GTSAC 2 cut(s) 112, 178
NspI RCATGY 2 cut(s) 106, 209
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 2 cut(s) 328, 513
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 449
PspPI GGNCC 2 cut(s) 171, 372
PstNI CAGNNNCTG 1 cut(s) 182
RsaI GTAC 2 cut(s) 395, 469
RsaNI GTAC 2 cut(s) 394, 468
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 538
SatI GCNGC 2 cut(s) 327, 512
Sau96I GGNCC 2 cut(s) 171, 372
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 2 cut(s) 90, 169
SduI GDGCHC 1 cut(s) 538
SetI ASST 7 cut(s) 221, 349, 465, 480, 531, 538, 574
SfaNI GCATC 1 cut(s) 395
SinI GGWCC 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 1 cut(s) 358
SsiI CCGC 1 cut(s) 327
SspI AATATT 1 cut(s) 594
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 2 cut(s) 88, 167
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 360
TasI AATT 1 cut(s) 358
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 329
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 112, 178
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 2 cut(s) 112, 178
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 372
XceI RCATGY 2 cut(s) 106, 209
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.