Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8440383.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1170

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8440383.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtccatccgtctaggcagtgttctgaccatagtagtctcctcccccaaagccgcagagctattcctcaaaactcatgacactaatttcgctagccgccccaaaatccaagcctcagagtacatatcctacggcacaaagggcatggccttttccgaatatggtccctattggcgccatgtaaggaagctctgtacgcttcagcttttctgtccggcaaaaatagaggttttcgcgccgctgagaaaggatgagctgggagtgctgctgagaaaactcaagaaagctgcagaggaaggtggagttgtggatgttagtgggcatattggtgtgatgaatgaggacattacgtacaggatggtgttaggttgtaagagggatgataggtttgatttgaaagccattgttgaggaaacgtttttcttggccggggctttcaatatatctgattttgttccttcccttgctgcacttgatattcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

8.41

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccII	CGCG	1 cut(s)	236
AciI	CCGC	3 cut(s)	54, 97, 239
AclI	AACGTT	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	3 cut(s)	122, 196, 353
AgsI	TTSAA	2 cut(s)	397, 439
AluBI	AGCT	5 cut(s)	61, 190, 205, 256, 287
AluI	AGCT	5 cut(s)	61, 190, 205, 256, 287
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	147, 426
ApeKI	GCWGC	3 cut(s)	265, 287, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	2 cut(s)	177, 238
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	430
AsuNHI	GCTAGC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	252, 274, 454
BccI	CCATC	2 cut(s)	14, 352
BceAI	ACGGC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	14, 93
BfmI	CTRYAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	6 cut(s)	54, 97, 239, 266, 288, 468
BlsI	GCNGC	6 cut(s)	55, 98, 240, 267, 289, 469
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	166, 176
BmrFI	CCNGG	1 cut(s)	430
BmtI	GCTAGC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	5 cut(s)	6, 256, 316, 363, 385
BseMII	CTCAG	3 cut(s)	129, 233, 260
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	252, 274, 454
BseYI	CCCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	149, 428
BshNI	GGYRCC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	215, 429
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	149, 428
BspACI	CCGC	3 cut(s)	54, 97, 239
BspANI	GGCC	2 cut(s)	149, 428
BspCNI	CTCAG	3 cut(s)	128, 234, 261
BspFNI	CGCG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	166, 176
BspMAI	CTGCAG	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	115, 242, 269
BstF5I	GGATG	5 cut(s)	6, 256, 316, 363, 385
BstFNI	CGCG	1 cut(s)	236
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 238
BstMAI	GTCTC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 196, 262
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	288
BstSNI	TACGTA	1 cut(s)	351
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	252, 274, 454
BsuRI	GGCC	2 cut(s)	149, 428
BtsCI	GGATG	5 cut(s)	6, 256, 316, 363, 385
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	94
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	2 cut(s)	177, 238
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	121, 195, 352
CviAII	CATG	3 cut(s)	77, 145, 179
CviQI	GTAC	3 cut(s)	121, 195, 352
DdeI	CTNAG	3 cut(s)	115, 242, 269
DinI	GGCGCC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	426
Eco105I	TACGTA	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	3 cut(s)	80, 148, 182
FaiI	YATR	8 cut(s)	32, 78, 125, 146, 162, 180, 324, 443
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	76, 144, 178
Fnu4HI	GCNGC	6 cut(s)	54, 97, 239, 266, 288, 468
FokI	GGATG	4 cut(s)	263, 323, 370, 392
Fsp4HI	GCNGC	6 cut(s)	54, 97, 239, 266, 288, 468
FspBI	CTAG	2 cut(s)	14, 93
GlaI	GCGC	2 cut(s)	176, 237
GluI	GCNGC	6 cut(s)	54, 97, 239, 266, 288, 468
GsaI	CCCAGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	149, 428
HapII	CCGG	2 cut(s)	215, 429
HhaI	GCGC	2 cut(s)	177, 238
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	80, 148, 182
Hin6I	GCGC	2 cut(s)	175, 236
HinP1I	GCGC	2 cut(s)	175, 236
HpaII	CCGG	2 cut(s)	215, 429
Hpy188I	TCNGA	4 cut(s)	27, 118, 157, 448
Hpy188III	TCNNGA	2 cut(s)	77, 280
HpyAV	CCTTC	2 cut(s)	290, 468
HpyCH4IV	ACGT	2 cut(s)	350, 416
HpyCH4V	TGCA	2 cut(s)	290, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 196, 262
HpyF3I	CTNAG	3 cut(s)	115, 242, 269
HpySE526I	ACGT	2 cut(s)	350, 416
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	80, 148, 182
HspAI	GCGC	2 cut(s)	175, 236
KasI	GGCGCC	1 cut(s)	174
LpnPI	CCDG	4 cut(s)	228, 242, 340, 442
Lsp1109I	GCAGC	3 cut(s)	252, 274, 454
MaeI	CTAG	2 cut(s)	14, 93
MaeII	ACGT	2 cut(s)	350, 416
MluCI	AATT	1 cut(s)	85
Mly113I	GGCGCC	1 cut(s)	175
MnlI	CCTC	8 cut(s)	52, 77, 124, 220, 286, 334, 369, 403
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	215, 429
MspR9I	CCNGG	1 cut(s)	430
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	141, 196, 262
NarI	GGCGCC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	430
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	80, 148, 182
NlaIV	GGNNCC	2 cut(s)	166, 176
PagI	TCATGA	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	55, 98, 240, 267, 289, 469
PluTI	GGCGCC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	416
PspFI	CCCAGC	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	166, 176
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	3 cut(s)	122, 196, 353
RsaNI	GTAC	3 cut(s)	121, 195, 352
RseI	CAYNNNNRTG	1 cut(s)	327
SatI	GCNGC	6 cut(s)	54, 97, 239, 266, 288, 468
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	288
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SnaBI	TACGTA	1 cut(s)	351
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	54, 97, 239
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	2 cut(s)	14, 93
StyD4I	CCNGG	1 cut(s)	428
TaiI	ACGT	2 cut(s)	353, 419
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	3 cut(s)	56, 99, 241
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	3 cut(s)	265, 287, 467
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	164
XspI	CTAG	2 cut(s)	14, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.