Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

54343405 .. 54344091

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATTCCTTTCTCTCAGGGATTGACTAAGCGGTTAAAGAAAGTTAGCAAGATGATCGATCAGCTCCTGGAGAAGATATTAGACGAGCATGAACAAGTTGCCAACACTAAAAGTCGAAAACAAGGCCGGCATGAGGATTTTGTAGACGTGTTGCTTTCGTTAACAAACCAACCGTTGGATCCGAATGATGAGCAAGTACACTTTGTTGATCGACCAAATGCGAAAGCCATCTTACTAGACATGATCATAGCGGCTATTGATACTTCACCCACATCGATTGTTTGGAGCCTTGCTGAGCTCTTGAGGCATCCAAGGATAATGAAGAATCTCCAAGAAGAGCTCCAAAGTGTGGTGGGTATGGATCGAATGGTGGAAGAATCAGATTTGCCCAAGCTTGATTACTTGAGTATGGTGGTGAAGGAGAGCTTCAGACTACACCCAGTTGCACCGTTACTGCTCCCACGTGAATCTATCGAGGACATTACAATCGATGGATATGACATACCCAAAAAGTCTCGGATCTTAGTAAACATCTGGAGCATTGGAAGAGATCCTAATGTTTGGTCGGAAAATGTGGAGGAATTTTATCCTGAAAGGTTCATGAACAACAATATAGACCTCCGAGGACACGACTTCAACTCATCCCATTTGGGTCTGGGCGAAGAGGGTGTCCGGGTATGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

229

Amino Acids

26.22

Weight (kDa)

5.21

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 211	2.6e-54	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	175, 349
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	31, 251
AclWI	GGATC	5 cut(s)	173, 186, 369, 527, 545
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	412
AcvI	CACGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	133, 175, 349
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	637
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	5 cut(s)	64, 298, 340, 394, 426
AluI	AGCT	5 cut(s)	64, 298, 340, 394, 426
Alw21I	GWGCWC	2 cut(s)	300, 342
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	5 cut(s)	173, 186, 369, 527, 545
AlwNI	CAGNNNCTG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	581
ArsI	GACNNNNNNTTYG	2 cut(s)	654, 686
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	258, 427
BamHI	GGATCC	1 cut(s)	178
BanII	GRGCYC	2 cut(s)	300, 342
BbrPI	CACGTG	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	300, 342
BccI	CCATC	2 cut(s)	236, 485
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	68, 674
BmgBI	CACGTC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	180, 287
BmrFI	CCNGG	2 cut(s)	68, 674
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	434
BpmI	CTGGAG	2 cut(s)	89, 556
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	322, 424
BpuMI	CCSGG	1 cut(s)	674
Bsa29I	ATCGAT	3 cut(s)	57, 275, 489
BsaAI	YACGTR	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	311, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 175, 349
Bse118I	RCCGGY	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	3 cut(s)	57, 275, 489
BseDI	CCNNGG	2 cut(s)	311, 622
BseGI	GGATG	2 cut(s)	307, 641
BseLI	CCNNNNNNNGG	3 cut(s)	133, 175, 349
BseMII	CTCAG	2 cut(s)	29, 285
BseNI	ACTGG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	126
BshVI	ATCGAT	3 cut(s)	57, 275, 489
BsiHKAI	GWGCWC	2 cut(s)	300, 342
BsiSI	CCGG	2 cut(s)	127, 673
BslI	CCNNNNNNNGG	3 cut(s)	133, 175, 349
BsmAI	GTCTC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	300, 342
Bsp143I	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	2 cut(s)	31, 251
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	28, 286
BspDI	ATCGAT	3 cut(s)	57, 275, 489
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	180, 287
BspPI	GGATC	5 cut(s)	173, 186, 369, 527, 545
BspQI	GCTCTTC	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	311, 622
BssMI	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	174, 450
Bst6I	CTCTTC	3 cut(s)	330, 541, 657
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	4 cut(s)	15, 27, 294, 523
BstF5I	GGATG	2 cut(s)	307, 641
BstKTI	GATC	8 cut(s)	57, 61, 181, 211, 246, 364, 522, 553
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	66, 672
BstX2I	RGATCY	3 cut(s)	178, 519, 550
BstYI	RGATCY	3 cut(s)	178, 519, 550
Bsu15I	ATCGAT	3 cut(s)	57, 275, 489
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	3 cut(s)	57, 275, 489
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	307, 641
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	126
ClaI	ATCGAT	3 cut(s)	57, 275, 489
Csp6I	GTAC	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	4 cut(s)	89, 131, 241, 601
CviJI	RGCY	9 cut(s)	64, 126, 227, 254, 288, 298, 340, 394, 426
CviKI_1	RGCY	9 cut(s)	64, 126, 227, 254, 288, 298, 340, 394, 426
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	4 cut(s)	15, 27, 294, 523
DpnI	GATC	8 cut(s)	56, 60, 180, 210, 245, 363, 521, 552
DpnII	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
Eam1104I	CTCTTC	3 cut(s)	330, 541, 657
EarI	CTCTTC	3 cut(s)	330, 541, 657
Ecl136II	GAGCTC	2 cut(s)	298, 340
Eco130I	CCWWGG	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	300, 342
Eco53kI	GAGCTC	2 cut(s)	298, 340
Eco57I	CTGAAG	1 cut(s)	412
Eco72I	CACGTG	1 cut(s)	464
EcoICRI	GAGCTC	2 cut(s)	298, 340
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	300, 342
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	4 cut(s)	92, 134, 244, 604
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	4 cut(s)	88, 130, 240, 600
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	294, 628
FriOI	GRGCYC	2 cut(s)	300, 342
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	89, 556
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	127, 673
Hin1II	CATG	4 cut(s)	92, 134, 244, 604
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	4 cut(s)	4, 325, 377, 467
HpaI	GTTAAC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	127, 673
HphI	GGTGA	2 cut(s)	258, 427
Hpy166II	GTNNAC	4 cut(s)	145, 162, 199, 529
Hpy188I	TCNGA	6 cut(s)	183, 382, 431, 519, 568, 623
Hpy188III	TCNNGA	4 cut(s)	301, 535, 590, 601
Hpy8I	GTNNAC	4 cut(s)	145, 162, 199, 529
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	2 cut(s)	174, 450
HpyCH4IV	ACGT	2 cut(s)	147, 463
HpyCH4V	TGCA	2 cut(s)	446, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	4 cut(s)	15, 27, 294, 523
HpySE526I	ACGT	2 cut(s)	147, 463
Hsp92II	CATG	4 cut(s)	92, 134, 244, 604
KroI	GCCGGC	1 cut(s)	126
KroNI	GCCGGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	162
Kzo9I	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	5 cut(s)	69, 285, 345, 462, 537
LpnPI	CCDG	8 cut(s)	2, 53, 80, 140, 453, 520, 603, 641
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	147, 463
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	8 cut(s)	56, 60, 180, 210, 245, 363, 521, 552
MboI	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
MboII	GAAGA	6 cut(s)	85, 334, 347, 386, 558, 674
MflI	RGATCY	3 cut(s)	178, 519, 550
MhlI	GDGCHC	2 cut(s)	300, 342
MluCI	AATT	2 cut(s)	581, 682
MmeI	TCCRAC	2 cut(s)	156, 546
MnlI	CCTC	7 cut(s)	127, 297, 469, 571, 617, 629, 658
MroNI	GCCGGC	1 cut(s)	126
MseI	TTAA	2 cut(s)	35, 161
MspI	CCGG	2 cut(s)	127, 673
MspR9I	CCNGG	2 cut(s)	68, 674
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	304
NaeI	GCCGGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	674
NdeII	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
NgoMIV	GCCGGC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	92, 134, 244, 604
NlaIV	GGNNCC	2 cut(s)	180, 287
PagI	TCATGA	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	128
PfeI	GAWTC	4 cut(s)	4, 325, 377, 467
PflMI	CCANNNNNTGG	2 cut(s)	175, 349
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	253
PmaCI	CACGTG	1 cut(s)	464
PmlI	CACGTG	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	464
Psp124BI	GAGCTC	2 cut(s)	300, 342
Psp6I	CCWGG	1 cut(s)	66
PspCI	CACGTG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	180, 287
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	3 cut(s)	178, 519, 550
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SacI	GAGCTC	2 cut(s)	300, 342
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	35, 161
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	8 cut(s)	54, 58, 178, 208, 243, 361, 519, 550
ScrFI	CCNGG	2 cut(s)	68, 674
SduI	GDGCHC	2 cut(s)	300, 342
SetI	ASST	9 cut(s)	66, 150, 300, 342, 396, 428, 466, 599, 621
SfaNI	GCATC	1 cut(s)	316
SmlI	CTYRAG	2 cut(s)	301, 403
SmoI	CTYRAG	2 cut(s)	301, 403
Sse9I	AATT	2 cut(s)	581, 682
SsiI	CCGC	2 cut(s)	31, 251
SspMI	CTAG	1 cut(s)	236
SstI	GAGCTC	2 cut(s)	300, 342
StyD4I	CCNGG	2 cut(s)	66, 672
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	174, 450
TaiI	ACGT	2 cut(s)	150, 466
TaqI	TCGA	7 cut(s)	57, 115, 211, 275, 364, 474, 489
TasI	AATT	2 cut(s)	581, 682
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	4 cut(s)	4, 325, 377, 467
Tru1I	TTAA	2 cut(s)	35, 161
Tru9I	TTAA	2 cut(s)	35, 161
TspDTI	ATGAA	4 cut(s)	105, 335, 589, 617
Van91I	CCANNNNNTGG	2 cut(s)	175, 349
XapI	RAATTY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.