Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

5011261 .. 5013410

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCTATTCGCCTTGGGAATGTACCCACCATACTAGTCTCGTCCCCGAAAGCTGCAGAGCTTTTTCTTAAAACCCATGACCCCAATTTCGCGAGCAGGCCGAGAGTCCAGGCCTCAGAGCACCTACCTTACGACACAATGGGCCTGGCATTTGCCGAGTATGACCCATATTGGCACCATGTGAGGAAGCTCTGCACCCTCGAGCTTCTTTGTCCCTCGAAAGCGGAGGCTTTTGCGCCGCTGCGAGGGGAGGAGATAGGGCTATTGGTGCAGTCGCTGAAGAAAGCTGGAGAGGGAGGTGAGGTGGTGGATGTTAGTGACAAGATTTACGGTGTTGTGCAAGCCATTGATGAGGTTCCGTTTCCGGTCGAAGAGAAGAAGAAAACAACTCCGGTTGTTAAGGCTGCTGCTAAGCCTAGAAGAGGTATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

144

Amino Acids

15.85

Weight (kDa)

7.78

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 109	1.4e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	174
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	224, 239
AcuI	CTGAAG	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	245, 422
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	108, 144
AluBI	AGCT	5 cut(s)	53, 61, 190, 205, 287
AluI	AGCT	5 cut(s)	53, 61, 190, 205, 287
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	98, 111, 142
ApeKI	GCWGC	4 cut(s)	53, 241, 404, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	40, 228, 391, 394
BciT130I	CCWGG	2 cut(s)	110, 146
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 417
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	5 cut(s)	54, 239, 242, 405, 408
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	5 cut(s)	55, 240, 243, 406, 409
Bme1390I	CCNGG	2 cut(s)	110, 146
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	176, 357
BmrFI	CCNGG	2 cut(s)	110, 146
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	13
BsaWI	WCCGGW	2 cut(s)	364, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 422
BseBI	CCWGG	2 cut(s)	110, 146
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	245, 422
BseMII	CTCAG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	40, 228, 391, 394
BsgI	GTGCAG	2 cut(s)	178, 290
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	100, 113, 144
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	365, 392
BslFI	GGGAC	2 cut(s)	28, 198
BslI	CCNNNNNNNGG	2 cut(s)	245, 422
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	2 cut(s)	28, 198
BsnI	GGCC	3 cut(s)	100, 113, 144
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	2 cut(s)	224, 239
BspANI	GGCC	3 cut(s)	100, 113, 144
BspCNI	CTCAG	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	176, 357
BspMAI	CTGCAG	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	2 cut(s)	110, 146
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	366, 415
BstC8I	GCNNGC	3 cut(s)	94, 98, 342
BstDEI	CTNAG	2 cut(s)	115, 411
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	2 cut(s)	110, 146
BstSCI	CCNGG	2 cut(s)	108, 144
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	40, 228, 391, 394
BsuRI	GGCC	3 cut(s)	100, 113, 144
BtsCI	GGATG	1 cut(s)	316
BtuMI	TCGCGA	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	94, 98, 342
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	2 cut(s)	77, 179
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	115, 411
DraIII	CACNNNGTG	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	366, 415
EarI	CTCTTC	2 cut(s)	366, 415
Eco130I	CCWWGG	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	108, 144
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	80, 182
FaiI	YATR	7 cut(s)	32, 78, 162, 169, 180, 428, 433
FaqI	GGGAC	2 cut(s)	28, 198
FatI	CATG	2 cut(s)	76, 178
Fnu4HI	GCNGC	5 cut(s)	54, 239, 242, 405, 408
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	5 cut(s)	54, 239, 242, 405, 408
FspBI	CTAG	2 cut(s)	35, 417
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	5 cut(s)	54, 239, 242, 405, 408
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	100, 113, 144
HapII	CCGG	2 cut(s)	365, 392
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	80, 182
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	365, 392
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	4 cut(s)	56, 195, 271, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	115, 411
Hsp92II	CATG	2 cut(s)	80, 182
HspAI	GCGC	1 cut(s)	236
LpnPI	CCDG	8 cut(s)	82, 95, 122, 131, 158, 273, 378, 405
Lsp1109I	GCAGC	4 cut(s)	40, 228, 391, 394
MaeI	CTAG	2 cut(s)	35, 417
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	5 cut(s)	292, 383, 388, 391, 432
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	69, 399
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	2 cut(s)	365, 392
MspR9I	CCNGG	2 cut(s)	110, 146
MvaI	CCWGG	2 cut(s)	110, 146
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	80, 182
NlaIV	GGNNCC	2 cut(s)	176, 357
NmeAIII	GCCGAG	2 cut(s)	126, 181
NmuCI	GTSAC	1 cut(s)	317
NruI	TCGCGA	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	55, 240, 243, 406, 409
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	108, 144
PspGI	CCWGG	2 cut(s)	108, 144
PspN4I	GGNNCC	2 cut(s)	176, 357
PspPI	GGNCC	1 cut(s)	142
PspXI	VCTCGAGB	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	277
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	69, 399
SatI	GCNGC	5 cut(s)	54, 239, 242, 405, 408
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	110, 146
SduI	GDGCHC	1 cut(s)	123
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	1 cut(s)	85
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	2 cut(s)	224, 239
SspMI	CTAG	2 cut(s)	35, 417
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	108, 144
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	3 cut(s)	201, 218, 369
TasI	AATT	1 cut(s)	85
TauI	GCSGC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	69, 399
Tru9I	TTAA	2 cut(s)	69, 399
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	4 cut(s)	53, 241, 404, 407
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	348
XagI	CCTNNNNNAGG	1 cut(s)	420
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	2 cut(s)	35, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.