Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

48140700 .. 48145557

Gene Structure 4858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAACACCTCCAGGGACATGACTTCCAGTTCATACCATTTGGATCTGGTAGAAAAGCGTGTCCGGGTCGATCTGCAATTAGGCCTAACCATAGTTCGGCTAGTTGTGGCGCATTTGGTGCACTGCTTTGACTGGGAGCTACCAGGCTGGTTGCAACTTCAAGACTTTGATATGACCAAGAAAATCAGCATATCTATGATGAAATGCACTCACTTACTTGCCAAGCTGACCTACCGCCTGCATATTCGCCATCTCGCCTCACCGTCACCATCACTTGACTCGGCAGGCCATCAACCACCGAACCCCGAAGTCGCTACACCGTACGAACCCGGATCAAGAGCCGACCAAAATCGGGTCTTGGTCAAACAAGGCCTCCGGTCTCCCCATGCAGCACATATGGCCGTGAAGCCACCGGTTCTCCTTTCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

143

Amino Acids

16.09

Weight (kDa)

9.3

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	2 cut(s)	51, 340
AcoI	YGGCCR	1 cut(s)	399
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	96, 352
AgeI	ACCGGT	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	161, 426
AjnI	CCWGG	2 cut(s)	11, 142
AluBI	AGCT	2 cut(s)	139, 226
AluI	AGCT	2 cut(s)	139, 226
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	384
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	51, 340
AoxI	GGCC	4 cut(s)	82, 286, 370, 399
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	389
AsiGI	ACCGGT	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	2 cut(s)	65, 330
AsuHPI	GGTGA	2 cut(s)	252, 258
BaeGI	GKGCMC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	258, 277, 297
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	2 cut(s)	13, 144
BcnI	CCSGG	2 cut(s)	65, 330
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	2 cut(s)	101, 430
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	4 cut(s)	13, 65, 144, 330
BmrFI	CCNGG	4 cut(s)	13, 65, 144, 330
BmrI	ACTGGG	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	142
BpuMI	CCSGG	2 cut(s)	65, 330
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	2 cut(s)	375, 412
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 402, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 352
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	27, 137
BseBI	CCWGG	2 cut(s)	13, 144
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	96, 352
BseNI	ACTGG	2 cut(s)	27, 137
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	4 cut(s)	84, 288, 372, 401
BshTI	ACCGGT	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	4 cut(s)	64, 330, 376, 413
BsiWI	CGTACG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	96, 352
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	84, 288, 372, 401
Bso31I	GGTCTC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	43, 70, 332
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	4 cut(s)	84, 288, 372, 401
BspPI	GGATC	2 cut(s)	51, 340
BspTNI	GGTCTC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	27, 137
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	43, 70, 332
Bst2UI	CCWGG	2 cut(s)	13, 144
Bst4CI	ACNGT	2 cut(s)	264, 321
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	239, 286
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	46, 73, 335
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	3 cut(s)	43, 70, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 398
BstNI	CCWGG	2 cut(s)	13, 144
BstSCI	CCNGG	4 cut(s)	11, 63, 142, 328
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	84, 288, 372, 401
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	239, 286
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	322
CspAI	ACCGGT	1 cut(s)	412
CviAII	CATG	2 cut(s)	19, 386
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	3 cut(s)	45, 72, 334
DpnII	GATC	3 cut(s)	43, 70, 332
EaeI	YGGCCR	1 cut(s)	399
Eco147I	AGGCCT	2 cut(s)	84, 372
Eco31I	GGTCTC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	11, 142
FaeI	CATG	2 cut(s)	22, 389
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	18, 385
FauNDI	CATATG	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	101, 430
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	4 cut(s)	84, 288, 372, 401
HapII	CCGG	4 cut(s)	64, 330, 376, 413
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	22, 389
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	4 cut(s)	64, 330, 376, 413
HphI	GGTGA	2 cut(s)	252, 258
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	161, 336
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	264, 321
HpyCH4V	TGCA	6 cut(s)	76, 121, 154, 207, 241, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 398
Hsp92II	CATG	2 cut(s)	22, 389
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	43, 70, 332
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	401
MaeI	CTAG	2 cut(s)	101, 430
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	3 cut(s)	45, 72, 334
MboI	GATC	3 cut(s)	43, 70, 332
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	19, 268, 383
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	4 cut(s)	64, 330, 376, 413
MspR9I	CCNGG	4 cut(s)	13, 65, 144, 330
MvaI	CCWGG	2 cut(s)	13, 144
MwoI	GCNNNNNNNGC	2 cut(s)	118, 398
NciI	CCSGG	2 cut(s)	65, 330
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	43, 70, 332
NlaIII	CATG	2 cut(s)	22, 389
NmeAIII	GCCGAG	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	264
PceI	AGGCCT	2 cut(s)	84, 372
Pfl23II	CGTACG	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	11, 142
PspGI	CCWGG	2 cut(s)	11, 142
PspLI	CGTACG	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	43, 70, 332
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	4 cut(s)	13, 65, 144, 330
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	11, 141, 228, 233, 431
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	77
SseBI	AGGCCT	2 cut(s)	84, 372
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	2 cut(s)	101, 430
StuI	AGGCCT	2 cut(s)	84, 372
StyD4I	CCNGG	4 cut(s)	11, 63, 142, 328
TaaI	ACNGT	2 cut(s)	264, 321
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	77
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	17, 21, 215
TspRI	CASTG	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	119
XspI	CTAG	2 cut(s)	101, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.