Rorug06G0466300

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
59081602 .. 59082431
830 bp
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UTR
Exon/CDS
Intron
Rorug06G0466300.1

Sequence Viewer

Length: 348 bp
ATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCTGGCTTCTCCTCCTATTAGATTTAACAAAGAAGAAATATTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATTCTAGCAAATTCAGATGGAATTAGGTTACTGAGAACAGTGGATGCTTCTAGAGCTGCTTATGTGGCTGTTGTGAAGGTCTCAGCAGTAGGAACATTTGGATTATCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGCAGCTCCAATGCCAGGCATGGTTGGACTGGCATTTCCAAATCAGAACACTGCTGATGAACAACTTATGGTGAAGGAATATTAA

Protein Analysis

115

Amino Acids

12.02

Weight (kDa)

4.69

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000282)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 123, 133
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 278
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 95, 179, 269
AluI AGCT 3 cut(s) 95, 179, 269
Alw26I GTCTC 2 cut(s) 103, 208
ApeKI GCWGC 2 cut(s) 179, 266
ApoI RAATTY 2 cut(s) 123, 133
AsuHPI GGTGA 1 cut(s) 346
BbvI GCAGC 2 cut(s) 166, 278
BccI CCATC 2 cut(s) 32, 134
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 103, 208
BfaI CTAG 2 cut(s) 128, 174
BisI GCNGC 2 cut(s) 180, 267
BlsI GCNGC 2 cut(s) 181, 268
Bme1390I CCNGG 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 22, 157
BsaI GGTCTC 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 2 cut(s) 146, 219
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 166, 278
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 2 cut(s) 103, 208
Bso31I GGTCTC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 147, 218
BspTNI GGTCTC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 297
BssMI GATC 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 163, 241
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 155, 205
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 2 cut(s) 103, 208
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 176, 188
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 166, 278
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 168, 312
Cac8I GCNNGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 27
CviAII CATG 1 cut(s) 283
CviJI RGCY 5 cut(s) 53, 95, 179, 191, 269
CviKI_1 RGCY 5 cut(s) 53, 95, 179, 191, 269
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 155, 205
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 286
FaiI YATR 3 cut(s) 186, 284, 332
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 180, 267
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 180, 267
FspBI CTAG 2 cut(s) 128, 174
GluI GCNGC 2 cut(s) 180, 267
Hin1II CATG 1 cut(s) 286
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HpaI GTTAAC 1 cut(s) 13
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 13, 44
Hpy188I TCNGA 2 cut(s) 139, 309
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 2 cut(s) 13, 44
HpyAV CCTTC 2 cut(s) 193, 331
HpyCH4III ACNGT 2 cut(s) 163, 241
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 188
HpyF3I CTNAG 2 cut(s) 155, 205
Hsp92II CATG 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 35, 234, 264, 278, 291
Lsp1109I GCAGC 2 cut(s) 166, 278
LweI GCATC 2 cut(s) 22, 157
MaeI CTAG 2 cut(s) 128, 174
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 92
MluCI AATT 3 cut(s) 123, 133, 144
MmeI TCCRAC 2 cut(s) 223, 268
MnlI CCTC 1 cut(s) 69
MseI TTAA 4 cut(s) 12, 72, 120, 346
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 176, 188
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 286
PkrI GCNGC 2 cut(s) 181, 268
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 12, 72, 120, 346
SatI GCNGC 2 cut(s) 180, 267
Sau3AI GATC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 279
SetI ASST 6 cut(s) 18, 97, 152, 181, 204, 271
SfaNI GCATC 2 cut(s) 22, 157
Sse9I AATT 3 cut(s) 123, 133, 144
SspI AATATT 2 cut(s) 87, 344
SspMI CTAG 2 cut(s) 128, 174
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 163, 241
TaqI TCGA 1 cut(s) 262
TasI AATT 3 cut(s) 123, 133, 144
TatI WGTACW 1 cut(s) 26
Tru1I TTAA 4 cut(s) 12, 72, 120, 346
Tru9I TTAA 4 cut(s) 12, 72, 120, 346
TscAI CASTG 2 cut(s) 168, 319
TseI GCWGC 2 cut(s) 179, 266
TspDTI ATGAA 1 cut(s) 336
TspRI CASTG 2 cut(s) 168, 319
XapI RAATTY 2 cut(s) 123, 133
XbaI TCTAGA 1 cut(s) 173
XspI CTAG 2 cut(s) 128, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.