Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006493.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

86515 .. 86907

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006493.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgaatctatcgatcgaggacattgcaatagatggatacgacatacctaagaagtcgcggatcattgtaaacatctggagcattggaagagatcctagtgtatggtcgaaaaatgttgaggaattttatcctgaaaggttcatgaacaacaatatagaactccggggacatgactttcagctcatcccatttgggtctggccgaagaggttgtccaggtctgcaattagggctaaccacaattcggatagttctggcacagttggtgcactgctttaactgggagctcccaactggcatgcaacctcaagacttggacatggctgagaatttcggtttaagtatgtcaaaagccaaacacttgcttgccaagccaacttaccgtcttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

130

Amino Acids

14.88

Weight (kDa)

6.82

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	68, 86
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	122, 328
AfiI	CCNNNNNNNGG	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	181, 286
AluI	AGCT	2 cut(s)	181, 286
Alw21I	GWGCWC	2 cut(s)	270, 288
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	68, 86
AoxI	GGCC	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	266
ApoI	RAATTY	2 cut(s)	122, 328
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AsuC2I	CCSGG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	270, 288
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	164, 216
BmrFI	CCNGG	2 cut(s)	164, 216
BmrI	ACTGGG	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	284, 298
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	216
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	284, 298
BseSI	GKGCMC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	270, 288
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	270, 288
Bsp143I	GATC	3 cut(s)	12, 60, 91
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	11
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	141
BspPI	GGATC	2 cut(s)	68, 86
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	284, 298
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	12, 60, 91
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	261, 383
Bst6I	CTCTTC	2 cut(s)	82, 199
BstC8I	GCNNGC	2 cut(s)	299, 366
BstDEI	CTNAG	2 cut(s)	48, 324
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	3 cut(s)	15, 63, 94
BstMBI	GATC	3 cut(s)	12, 60, 91
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 370
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	162, 214
BstSLI	GKGCMC	1 cut(s)	270
BstUI	CGCG	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	11
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	2 cut(s)	299, 366
CciI	TCATGA	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	11
CviAII	CATG	4 cut(s)	142, 170, 298, 319
CviJI	RGCY	7 cut(s)	181, 201, 232, 286, 323, 353, 373
CviKI_1	RGCY	7 cut(s)	181, 201, 232, 286, 323, 353, 373
DdeI	CTNAG	2 cut(s)	48, 324
DpnI	GATC	3 cut(s)	14, 62, 93
DpnII	GATC	3 cut(s)	12, 60, 91
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	82, 199
EarI	CTCTTC	2 cut(s)	82, 199
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	4 cut(s)	145, 173, 301, 322
FaiI	YATR	9 cut(s)	44, 103, 143, 155, 171, 299, 320, 344, 389
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	141, 169, 297, 318
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	4 cut(s)	145, 173, 301, 322
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	70, 268
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	4 cut(s)	76, 131, 142, 308
Hpy8I	GTNNAC	2 cut(s)	70, 268
HpyCH4III	ACNGT	2 cut(s)	261, 383
HpyCH4V	TGCA	4 cut(s)	26, 223, 268, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 370
HpyF3I	CTNAG	2 cut(s)	48, 324
Hsp92II	CATG	4 cut(s)	145, 173, 301, 322
Kzo9I	GATC	3 cut(s)	12, 60, 91
LmnI	GCTCC	3 cut(s)	78, 283, 291
LpnPI	CCDG	9 cut(s)	61, 144, 176, 183, 201, 228, 239, 265, 279
MaeI	CTAG	1 cut(s)	96
MalI	GATC	3 cut(s)	14, 62, 93
MboI	GATC	3 cut(s)	12, 60, 91
MboII	GAAGA	2 cut(s)	99, 216
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	270, 288
MluCI	AATT	4 cut(s)	122, 224, 240, 328
MnlI	CCTC	4 cut(s)	10, 112, 200, 315
MseI	TTAA	2 cut(s)	276, 338
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	2 cut(s)	164, 216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	229, 370
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	12, 60, 91
NlaIII	CATG	4 cut(s)	145, 173, 301, 322
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PagI	TCATGA	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	4
Ple19I	CGATCG	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	276, 338
Sau3AI	GATC	3 cut(s)	12, 60, 91
ScrFI	CCNGG	2 cut(s)	164, 216
SduI	GDGCHC	2 cut(s)	270, 288
SetI	ASST	7 cut(s)	49, 140, 183, 211, 220, 288, 307
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	4 cut(s)	122, 224, 240, 328
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	2 cut(s)	162, 214
TaaI	ACNGT	2 cut(s)	261, 383
TaqI	TCGA	3 cut(s)	11, 15, 107
TasI	AATT	4 cut(s)	122, 224, 240, 328
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	276, 338
Tru9I	TTAA	2 cut(s)	276, 338
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	17, 130, 158
TspRI	CASTG	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	122, 328
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.