Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

11261680 .. 11265989

Gene Structure 4310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCTCAATCACCAACCTTATAGCTGTGTAGTAGAGTTAGCCATGGATTGGGTTGGGGCAATACTTGGGTTGCTTGCTCTTGTTTATGTACTGCAAGCATGGCTGTCCAAAAGCAAGAACAAGAAGAAGAGATTGCCTCCTGGTCCAAGAGGGTTTCCACTTTTCGGAAACCTGCACATGTTAGGGGAGTTCCCTCACTGGTATCTGCATCGACTAGCCCAAAAGCACGGACATCATGTATCTGCGCTTAGGCCTTGCTCCTGTTGTTGTTGCCTCATCCCCTCAGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

98

Amino Acids

10.89

Weight (kDa)

9.28

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	48, 164
AflIII	ACRYGT	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
AxyI	CCTNAGG	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bpu10I	CCTNAGC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 164
Bse1I	ACTGG	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	48, 164
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	48, 164
BsnI	GGCC	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	42
BspANI	GGCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	75, 96
BstDEI	CTNAG	2 cut(s)	248, 283
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	75, 96
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	4 cut(s)	43, 99, 178, 236
CviJI	RGCY	6 cut(s)	24, 41, 103, 218, 253, 288
CviKI_1	RGCY	6 cut(s)	24, 41, 103, 218, 253, 288
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	248, 283
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	4 cut(s)	46, 102, 181, 239
FaiI	YATR	6 cut(s)	21, 44, 87, 100, 179, 237
FatI	CATG	4 cut(s)	42, 98, 177, 235
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	253
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	46, 102, 181, 239
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	94, 175, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	248, 283
Hsp92II	CATG	4 cut(s)	46, 102, 181, 239
HspAI	GCGC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	126, 153, 184, 185, 270, 274
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	215
MboII	GAAGA	2 cut(s)	136, 139
MnlI	CCTC	5 cut(s)	143, 147, 204, 284, 292
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	42
NlaIII	CATG	4 cut(s)	46, 102, 181, 239
NspI	RCATGY	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	253
PciI	ACATGT	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	290
PscI	ACATGT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	3 cut(s)	19, 26, 174
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	143
SseBI	AGGCCT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	42
TaqI	TCGA	1 cut(s)	211
TatI	WGTACW	1 cut(s)	88
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.