Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013612.1

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

92473 .. 93084

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013612.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggttgccggtgcaatggacacgtcagcaacggcaattgagtggacactttccgaactcattaggcaccctcgggtgatgaagaaagtccagaaagagttagaagatgtagtaggcatggagagaatggtggatgaatcagacttggagaagttagagtacttgaacatggtgttgaaggaaaacatgaggctacatccagttgctccattgttgatcccacatgcagccattgaagactgcattgttaacggcttccacataccccaaaaatcgcgcgtcatcgtaaatatttgggcagttgggagagaccctagtgcttggactgatcctgacaagttcataccggaaaggtttgccggtagtaatatagatctccgtggacgggacttccaactccttccgtttggttctggccgaagaggttgccctggaatgcatctagggctaactgtggtccttctggtggtggcgcaacttatgcattgctttaattggaaacttccggataatatgttgccaaatgagttggacatgactgaggagtttggtctaacagttccaagggccaaacatctactagccattcctacttatcgtctccgacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

203

Amino Acids

23.06

Weight (kDa)

6.16

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccII	CGCG	2 cut(s)	277, 279
AccIII	TCCGGA	1 cut(s)	505
AclWI	GGATC	2 cut(s)	211, 323
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	385, 466
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	166, 178, 236
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	303, 605
AlwI	GGATC	2 cut(s)	211, 323
Ama87I	CYCGRG	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	415, 567
ApeKI	GCWGC	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	279, 475
AspS9I	GGNCC	2 cut(s)	457, 567
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	239
BceAI	ACGGC	2 cut(s)	48, 268
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	303, 605
BfaI	CTAG	3 cut(s)	315, 443, 581
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	457, 567
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	71, 379, 430, 563
BsaWI	WCCGGW	2 cut(s)	346, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 466
Bse118I	RCCGGY	2 cut(s)	8, 359
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	21, 484
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	4 cut(s)	71, 379, 430, 563
BseGI	GGATG	2 cut(s)	139, 196
BseLI	CCNNNNNNNGG	2 cut(s)	385, 466
BseMI	GCAATG	2 cut(s)	21, 484
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	239
Bsh1236I	CGCG	2 cut(s)	277, 279
BshFI	GGCC	2 cut(s)	417, 569
BshNI	GGYRCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	9, 347, 360, 506
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	2 cut(s)	385, 466
BsmAI	GTCTC	2 cut(s)	303, 605
BsmBI	CGTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	417, 569
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	216, 328, 373
BspANI	GGCC	2 cut(s)	417, 569
BspCNI	CTCAG	1 cut(s)	532
BspEI	TCCGGA	1 cut(s)	505
BspFNI	CGCG	2 cut(s)	277, 279
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	211, 323
BspT107I	GGYRCC	1 cut(s)	66
BspTNI	GGTCTC	1 cut(s)	303
BsrDI	GCAATG	2 cut(s)	21, 484
BsrFI	RCCGGY	2 cut(s)	8, 359
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	2 cut(s)	8, 359
BssECI	CCNNGG	4 cut(s)	71, 379, 430, 563
BssMI	GATC	3 cut(s)	216, 328, 373
BssT1I	CCWWGG	1 cut(s)	563
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	454, 559
Bst6I	CTCTTC	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	139, 196
BstFNI	CGCG	2 cut(s)	277, 279
BstHHI	GCGC	2 cut(s)	279, 475
BstKTI	GATC	3 cut(s)	219, 331, 376
BstMAI	GTCTC	2 cut(s)	303, 605
BstMBI	GATC	3 cut(s)	216, 328, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 481
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	430
BstUI	CGCG	2 cut(s)	277, 279
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	417, 569
BtgI	CCRYGG	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	139, 196
CfoI	GCGC	2 cut(s)	279, 475
Cfr10I	RCCGGY	2 cut(s)	8, 359
Cfr13I	GGNCC	2 cut(s)	457, 567
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	118, 169, 187, 224, 535
CviJI	RGCY	7 cut(s)	193, 230, 255, 417, 448, 569, 584
CviKI_1	RGCY	7 cut(s)	193, 230, 255, 417, 448, 569, 584
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	3 cut(s)	218, 330, 375
DpnII	GATC	3 cut(s)	216, 328, 373
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	563
EcoT22I	ATGCAT	2 cut(s)	441, 486
ErhI	CCWWGG	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	5 cut(s)	121, 172, 190, 227, 538
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	117, 168, 186, 223, 534
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	2 cut(s)	146, 183
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	3 cut(s)	315, 443, 581
GlaI	GCGC	2 cut(s)	278, 474
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	417, 569
HapII	CCGG	4 cut(s)	9, 347, 360, 506
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	279, 475
Hin1II	CATG	5 cut(s)	121, 172, 190, 227, 538
Hin6I	GCGC	2 cut(s)	277, 473
HinP1I	GCGC	2 cut(s)	277, 473
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	137
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	4 cut(s)	9, 347, 360, 506
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	45, 250, 383
Hpy188I	TCNGA	3 cut(s)	55, 142, 605
Hpy188III	TCNNGA	3 cut(s)	91, 332, 506
Hpy8I	GTNNAC	3 cut(s)	45, 250, 383
HpyAV	CCTTC	3 cut(s)	172, 410, 470
HpyCH4III	ACNGT	2 cut(s)	454, 559
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	14, 227, 243, 439, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 481
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	121, 172, 190, 227, 538
HspAI	GCGC	2 cut(s)	277, 473
Kpn2I	TCCGGA	1 cut(s)	505
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	216, 328, 373
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	3 cut(s)	315, 443, 581
MaeII	ACGT	1 cut(s)	23
MalI	GATC	3 cut(s)	218, 330, 375
MboI	GATC	3 cut(s)	216, 328, 373
MboII	GAAGA	4 cut(s)	94, 116, 248, 432
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	2 cut(s)	36, 493
MmeI	TCCRAC	2 cut(s)	418, 510
MnlI	CCTC	4 cut(s)	81, 183, 416, 535
Mph1103I	ATGCAT	2 cut(s)	441, 486
MroI	TCCGGA	1 cut(s)	505
MseI	TTAA	2 cut(s)	249, 492
MspI	CCGG	4 cut(s)	9, 347, 360, 506
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	2 cut(s)	277, 279
MwoI	GCNNNNNNNGC	2 cut(s)	445, 481
NdeII	GATC	3 cut(s)	216, 328, 373
NlaIII	CATG	5 cut(s)	121, 172, 190, 227, 538
NlaIV	GGNNCC	1 cut(s)	68
NsiI	ATGCAT	2 cut(s)	441, 486
NspI	RCATGY	1 cut(s)	227
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	457, 567
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	249, 492
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	216, 328, 373
Sau96I	GGNCC	2 cut(s)	457, 567
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	432
SetI	ASST	3 cut(s)	26, 356, 427
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	457
Sse9I	AATT	2 cut(s)	36, 493
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	3 cut(s)	315, 443, 581
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	2 cut(s)	454, 559
TaiI	ACGT	1 cut(s)	26
TasI	AATT	2 cut(s)	36, 493
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	249, 492
Tru9I	TTAA	2 cut(s)	249, 492
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	3 cut(s)	95, 150, 331
TspGWI	ACGGA	2 cut(s)	368, 393
VpaK11BI	GGWCC	1 cut(s)	457
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	3 cut(s)	315, 443, 581
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	2 cut(s)	441, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.