Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

34702528 .. 34785917

Gene Structure 83390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG137600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCCATCCTTATAGTCTTCCTCATATTCATCTGGTATCTCATCACTACAGCCTCAAAACCAAAGCACAAATCAAAGCTACCTCCTGGCCCTTGGTCACTACCAATCATTGGTAACCTTCATATGCTAGGCAGTCTCCCACACCGTAGCCTCCAACATTTGGCCAAAAGATATGGACCAATAATGTCTATTCATCTTGGCAATGTACCTGTGATAGTAGTCTCATCTCCAAAAGCTGCAGAGCTGTTCCTCAAAACCCATGACCACAATTTTGCCAACCGGCCCAAAACCAAGGTCAGTCAGTACATGACTTACAATGCAAGGGATCTGGCCTTTGCTGAATATGGTCCATATTGGCGTCATGTGAGGAAGTTTTGCACAACCGAACTTTTTTGTTCCTCAAAAGTTCGAGCTTTTGCACTGCTGCGAAAGGAGGAGATAGGGGTATTGGTGCAGTCACTGAAGAGAGCTGGAGAGGAAGGCCAAGTGGTGGATATTAGTGAAAAAATTGGTGTGGTTATTGAGGATATAATGTATAGGATGATAGTGGGTCGCAAAAAGAATGATTGGTTTGATATGAACGAGATTATTAAGGAGGCTATATCATTGTTCGGAGCATTCAACATAGCTGATTATGTGCCATTCCTCAGTCCATTTGATTTTCAGAACATCAAATCAATTTCAAGAGAGGAGTTGAGAAACATATTCTTTTGCTACAACGGAGGAAAATGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

245

Amino Acids

28.1

Weight (kDa)

9.51

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 220	4.3e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	110, 160, 490
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	2 cut(s)	3, 162
AcuI	CTGAAG	1 cut(s)	482
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	2 cut(s)	207, 305
AfiI	CCNNNNNNNGG	3 cut(s)	110, 160, 490
AgsI	TTSAA	2 cut(s)	622, 684
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	6 cut(s)	79, 236, 244, 413, 470, 629
AluI	AGCT	6 cut(s)	79, 236, 244, 413, 470, 629
Alw26I	GTCTC	2 cut(s)	140, 226
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	6 cut(s)	3, 88, 162, 281, 330, 481
ApeKI	GCWGC	2 cut(s)	236, 424
ArsI	GACNNNNNNTTYG	4 cut(s)	254, 279, 286, 311
AspS9I	GGNCC	4 cut(s)	89, 176, 282, 347
AvaII	GGWCC	2 cut(s)	176, 347
BalI	TGGCCA	2 cut(s)	5, 164
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	223, 411
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	140, 226
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	2 cut(s)	48, 237
BisI	GCNGC	2 cut(s)	237, 425
BlsI	GCNGC	2 cut(s)	238, 426
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	176, 347
BmgT120I	GGNCC	4 cut(s)	89, 176, 282, 347
BmrFI	CCNGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	92, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 160, 490
Bse118I	RCCGGY	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	92, 291
BseGI	GGATG	2 cut(s)	6, 546
BseLI	CCNNNNNNNGG	3 cut(s)	110, 160, 490
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	661
BseRI	GAGGAG	2 cut(s)	449, 704
BseXI	GCAGC	2 cut(s)	223, 411
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	6 cut(s)	5, 90, 164, 283, 332, 483
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	110, 160, 490
BsmAI	GTCTC	2 cut(s)	140, 226
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	6 cut(s)	5, 90, 164, 283, 332, 483
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	6 cut(s)	5, 90, 164, 283, 332, 483
BspCNI	CTCAG	1 cut(s)	660
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	92, 291
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	358
BssT1I	CCWWGG	2 cut(s)	92, 291
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	458
BstACI	GRCGYC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	647
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	6, 546
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	140, 226
BstMBI	GATC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	48, 237
BstV1I	GCAGC	2 cut(s)	223, 411
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	6 cut(s)	5, 90, 164, 283, 332, 483
BtsCI	GGATG	2 cut(s)	6, 546
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	419, 458
CaiI	CAGNNNCTG	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	89, 176, 282, 347
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	206, 304
CviAII	CATG	3 cut(s)	260, 307, 362
CviQI	GTAC	2 cut(s)	206, 304
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	2 cut(s)	3, 162
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco130I	CCWWGG	2 cut(s)	92, 291
Eco47I	GGWCC	2 cut(s)	176, 347
Eco57I	CTGAAG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	92, 291
ErhI	CCWWGG	2 cut(s)	92, 291
FaeI	CATG	3 cut(s)	263, 310, 365
FatI	CATG	3 cut(s)	259, 306, 361
FauNDI	CATATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	237, 425
FokI	GGATG	1 cut(s)	553
Fsp4HI	GCNGC	2 cut(s)	237, 425
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	237, 425
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	6 cut(s)	5, 90, 164, 283, 332, 483
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	3 cut(s)	263, 310, 365
HpaII	CCGG	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	614, 666
Hpy188III	TCNNGA	1 cut(s)	684
HpyAV	CCTTC	2 cut(s)	128, 473
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	5 cut(s)	239, 320, 378, 419, 454
HpyF3I	CTNAG	1 cut(s)	647
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	263, 310, 365
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	614
LpnPI	CCDG	7 cut(s)	19, 72, 99, 222, 293, 314, 456
Lsp1109I	GCAGC	2 cut(s)	223, 411
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	96, 113, 456
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	10, 475
MflI	RGATCY	1 cut(s)	325
MlsI	TGGCCA	2 cut(s)	5, 164
MluCI	AATT	3 cut(s)	268, 507, 678
MluNI	TGGCCA	2 cut(s)	5, 164
MmeI	TCCRAC	1 cut(s)	178
Mox20I	TGGCCA	2 cut(s)	5, 164
MscI	TGGCCA	2 cut(s)	5, 164
MseI	TTAA	1 cut(s)	591
Msp20I	TGGCCA	2 cut(s)	5, 164
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	263, 310, 365
NmuCI	GTSAC	2 cut(s)	96, 456
PctI	GAATGC	1 cut(s)	617
PflMI	CCANNNNNTGG	3 cut(s)	110, 160, 490
PkrI	GCNGC	2 cut(s)	238, 426
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	4 cut(s)	89, 176, 282, 347
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	207, 305
RsaNI	GTAC	2 cut(s)	206, 304
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	2 cut(s)	237, 425
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	4 cut(s)	89, 176, 282, 347
ScrFI	CCNGG	1 cut(s)	87
SfcI	CTRYAG	2 cut(s)	48, 237
SinI	GGWCC	2 cut(s)	176, 347
Sse9I	AATT	3 cut(s)	268, 507, 678
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	92, 291
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	409
TasI	AATT	3 cut(s)	268, 507, 678
TatI	WGTACW	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	2 cut(s)	426, 465
TseFI	GTSAC	2 cut(s)	96, 456
TseI	GCWGC	2 cut(s)	236, 424
Tsp45I	GTSAC	2 cut(s)	96, 456
TspDTI	ATGAA	4 cut(s)	19, 110, 182, 593
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	2 cut(s)	426, 465
Van91I	CCANNNNNTGG	3 cut(s)	110, 160, 490
VpaK11BI	GGWCC	2 cut(s)	176, 347
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.