Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

5466966 .. 5467754

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG076500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGACCCATATTTCTCATTATCCCTCTCAGCAACTCCACACAAAACAGAAAGCCAAGCCAGAAAAGATGAGTCCTTCAACAATAATAGCCATCCTCCTGGTTCTCCTCACATGCCTTTGGTTACTCATCTCTGCTTCCTCCAAATCAAAACACAAAAAACTACCACCCGGCCCTCGGTCACTGCCAATAATCGGAAATCTCCACATGCTAGGCAACCTCCCCCATCGAAGCCTCCAACACCTGGCCAAAAAATATGGACACATCATGTACATCCGTCTAGGTAGTGTTCCGACCATAGTAGTCTCCTCCCCAAAAGCCGCAGAGCTATTCCTCAAAACTCATGACACTAATTTCGCCAGCCGGCCCAAAATCCAAGCCTCGGAGTACATATCCTACGGCACAAAGGGCATGGCCTTTTCCGAATATGGTCCCTATTGGCGCCATGTAAGGAAGCTCTGTACGCTTCAGCTTTTCTGTCCAGCAAAAATAGAGGCTTTCGCGCCGCTGAGAAAGGATGAGCTGGGAGTGCTGCTGAGAAAGCTCAAGAAAGCTGCAGAGGAAGGTGGTGTTGTGGATGTTAGTGAGGATATTGGTGTGATGAATGAGGACATTACGTACAGGATGGTGTTGGGTTGTAAAAGGGATGATCAGTTTGATTTGAAAGCCATCGTTGAGGAAACGTCTTTCTTGGCTGGGGCTTTCAATATATCTGATTTTGTTCCTTCCCTTGCTGCACTTGATATTCTGTTCCTTCCCTTGCTGCACTTGATATTCAGGTATGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

262

Amino Acids

29.36

Weight (kDa)

9.46

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	55 - 242	5e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccII	CGCG	1 cut(s)	500
AciI	CCGC	2 cut(s)	318, 503
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	4 cut(s)	269, 386, 460, 617
AfiI	CCNNNNNNNGG	4 cut(s)	174, 191, 241, 379
AgsI	TTSAA	3 cut(s)	78, 661, 703
AjnI	CCWGG	2 cut(s)	96, 240
AluBI	AGCT	6 cut(s)	325, 454, 469, 520, 541, 551
AluI	AGCT	6 cut(s)	325, 454, 469, 520, 541, 551
Alw26I	GTCTC	1 cut(s)	307
AoxI	GGCC	4 cut(s)	169, 243, 362, 411
ApeKI	GCWGC	4 cut(s)	529, 551, 731, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	2 cut(s)	441, 502
AspS9I	GGNCC	3 cut(s)	170, 363, 428
AsuC2I	CCSGG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	516, 538, 718, 747
BccI	CCATC	4 cut(s)	98, 231, 616, 674
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	2 cut(s)	98, 242
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	209, 278
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	442
BisI	GCNGC	6 cut(s)	318, 503, 530, 552, 732, 761
BlsI	GCNGC	6 cut(s)	319, 504, 531, 553, 733, 762
Bme1390I	CCNGG	3 cut(s)	98, 168, 242
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	3 cut(s)	170, 363, 428
BmiI	GGNNCC	2 cut(s)	430, 440
BmrFI	CCNGG	3 cut(s)	98, 168, 242
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	173, 378
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 191, 241, 379
Bse118I	RCCGGY	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	98, 242
BseDI	CCNNGG	2 cut(s)	173, 378
BseGI	GGATG	6 cut(s)	90, 270, 520, 580, 627, 649
BseLI	CCNNNNNNNGG	4 cut(s)	174, 191, 241, 379
BseMII	CTCAG	3 cut(s)	41, 497, 524
BseRI	GAGGAG	2 cut(s)	95, 295
BseXI	GCAGC	4 cut(s)	516, 538, 718, 747
BseYI	CCCAGC	2 cut(s)	520, 692
BsgI	GTGCAG	2 cut(s)	717, 746
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	4 cut(s)	171, 245, 364, 413
BshNI	GGYRCC	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	168, 361
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	4 cut(s)	174, 191, 241, 379
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	4 cut(s)	171, 245, 364, 413
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	646
BspACI	CCGC	2 cut(s)	318, 503
BspANI	GGCC	4 cut(s)	171, 245, 364, 413
BspCNI	CTCAG	3 cut(s)	40, 498, 525
BspFNI	CGCG	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	430, 440
BspMAI	CTGCAG	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	173, 378
BssMI	GATC	1 cut(s)	646
BssNI	GRCGYC	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	98, 242
BstACI	GRCGYC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	358, 362
BstDEI	CTNAG	3 cut(s)	27, 506, 533
BstF5I	GGATG	6 cut(s)	90, 270, 520, 580, 627, 649
BstFNI	CGCG	1 cut(s)	500
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	441, 502
BstKTI	GATC	1 cut(s)	649
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	646
BstMWI	GCNNNNNNNGC	4 cut(s)	405, 460, 526, 538
BstNI	CCWGG	2 cut(s)	98, 242
BstNSI	RCATGY	2 cut(s)	114, 208
BstSCI	CCNGG	3 cut(s)	96, 166, 240
BstSFI	CTRYAG	1 cut(s)	552
BstSNI	TACGTA	1 cut(s)	615
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	4 cut(s)	516, 538, 718, 747
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	4 cut(s)	171, 245, 364, 413
BtsCI	GGATG	6 cut(s)	90, 270, 520, 580, 627, 649
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	358, 362
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	2 cut(s)	441, 502
Cfr10I	RCCGGY	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	170, 363, 428
Csp6I	GTAC	4 cut(s)	268, 385, 459, 616
CviAII	CATG	6 cut(s)	111, 205, 265, 341, 409, 443
CviQI	GTAC	4 cut(s)	268, 385, 459, 616
DdeI	CTNAG	3 cut(s)	27, 506, 533
DinI	GGCGCC	1 cut(s)	440
DpnI	GATC	1 cut(s)	648
DpnII	GATC	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	243
Eco105I	TACGTA	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	96, 240
EgeI	GGCGCC	1 cut(s)	440
EheI	GGCGCC	1 cut(s)	440
FaeI	CATG	6 cut(s)	114, 208, 268, 344, 412, 446
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	6 cut(s)	110, 204, 264, 340, 408, 442
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	6 cut(s)	318, 503, 530, 552, 732, 761
FokI	GGATG	6 cut(s)	77, 257, 527, 587, 634, 656
Fsp4HI	GCNGC	6 cut(s)	318, 503, 530, 552, 732, 761
FspBI	CTAG	2 cut(s)	209, 278
GlaI	GCGC	2 cut(s)	440, 501
GluI	GCNGC	6 cut(s)	318, 503, 530, 552, 732, 761
GsaI	CCCAGC	2 cut(s)	524, 696
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	4 cut(s)	171, 245, 364, 413
HapII	CCGG	2 cut(s)	168, 361
HhaI	GCGC	2 cut(s)	441, 502
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	6 cut(s)	114, 208, 268, 344, 412, 446
Hin6I	GCGC	2 cut(s)	439, 500
HinP1I	GCGC	2 cut(s)	439, 500
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	2 cut(s)	168, 361
Hpy188I	TCNGA	5 cut(s)	194, 291, 382, 421, 712
Hpy188III	TCNNGA	2 cut(s)	341, 544
HpyAV	CCTTC	4 cut(s)	84, 554, 732, 761
HpyCH4IV	ACGT	2 cut(s)	614, 680
HpyCH4V	TGCA	3 cut(s)	554, 734, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	405, 460, 526, 538
HpyF3I	CTNAG	3 cut(s)	27, 506, 533
HpySE526I	ACGT	2 cut(s)	614, 680
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	6 cut(s)	114, 208, 268, 344, 412, 446
HspAI	GCGC	2 cut(s)	439, 500
KasI	GGCGCC	1 cut(s)	438
KroI	GCCGGC	1 cut(s)	360
KroNI	GCCGGC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	1 cut(s)	646
Lsp1109I	GCAGC	4 cut(s)	516, 538, 718, 747
MaeI	CTAG	2 cut(s)	209, 278
MaeII	ACGT	2 cut(s)	614, 680
MaeIII	GTNAC	2 cut(s)	120, 177
MalI	GATC	1 cut(s)	648
MboI	GATC	1 cut(s)	646
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	2 cut(s)	349, 784
MluNI	TGGCCA	1 cut(s)	245
Mly113I	GGCGCC	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	2 cut(s)	259, 314
Mox20I	TGGCCA	1 cut(s)	245
MroNI	GCCGGC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	787
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	2 cut(s)	168, 361
MspR9I	CCNGG	3 cut(s)	98, 168, 242
MvaI	CCWGG	2 cut(s)	98, 242
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	4 cut(s)	405, 460, 526, 538
NaeI	GCCGGC	1 cut(s)	362
NarI	GGCGCC	1 cut(s)	439
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	646
NgoMIV	GCCGGC	1 cut(s)	360
NlaIII	CATG	6 cut(s)	114, 208, 268, 344, 412, 446
NlaIV	GGNNCC	2 cut(s)	430, 440
NmuCI	GTSAC	1 cut(s)	177
NspI	RCATGY	2 cut(s)	114, 208
PagI	TCATGA	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	6 cut(s)	319, 504, 531, 553, 733, 762
PleI	GAGTC	1 cut(s)	78
PluTI	GGCGCC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	96, 240
PspFI	CCCAGC	2 cut(s)	520, 692
PspGI	CCWGG	2 cut(s)	96, 240
PspN4I	GGNNCC	2 cut(s)	430, 440
PspPI	GGNCC	3 cut(s)	170, 363, 428
PstI	CTGCAG	1 cut(s)	556
RsaI	GTAC	4 cut(s)	269, 386, 460, 617
RsaNI	GTAC	4 cut(s)	268, 385, 459, 616
SaqAI	TTAA	1 cut(s)	787
SatI	GCNGC	6 cut(s)	318, 503, 530, 552, 732, 761
Sau3AI	GATC	1 cut(s)	646
Sau96I	GGNCC	3 cut(s)	170, 363, 428
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	3 cut(s)	98, 168, 242
SfcI	CTRYAG	1 cut(s)	552
SfoI	GGCGCC	1 cut(s)	440
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SnaBI	TACGTA	1 cut(s)	615
Sse9I	AATT	2 cut(s)	349, 784
SsiI	CCGC	2 cut(s)	318, 503
SspDI	GGCGCC	1 cut(s)	438
SspMI	CTAG	2 cut(s)	209, 278
StyD4I	CCNGG	3 cut(s)	96, 166, 240
TaiI	ACGT	2 cut(s)	617, 683
TaqI	TCGA	1 cut(s)	226
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	349, 784
TatI	WGTACW	2 cut(s)	267, 384
TauI	GCSGC	2 cut(s)	320, 505
Tru1I	TTAA	1 cut(s)	787
Tru9I	TTAA	1 cut(s)	787
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	4 cut(s)	529, 551, 731, 760
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	614
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	428
XceI	RCATGY	2 cut(s)	114, 208
XspI	CTAG	2 cut(s)	209, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.