Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Forward (+)

30625566 .. 30625973

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1225100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACTCCTTCAGCAATAGTCATCCTCCTACTCTTCCTTACCTTCCTCTGGTATCTCATCTATATCCTAACCTTTGGATTCCGGAGGTCGAAACACCAAGGAATACTACCTCCTGGCCCTACAACACTACCAATCATTGGTAACCTTCATATGCTAGGCAACTTTCCCTACCGCAGCCTCCAACACTTGGCCAAAAAATATGGCCCTATAATGTCTATACGCCTAGGCTTCATACCCACCATAGTGGTTTCATCCCCCAAAGCTGCAGAGCTATTCTTGAAAACCCACGACAGCGTTTTCGCTAGCCGCCCTACGCTTGAAGTCTGTGATTACTTTAAAAGAATTGTGCTCGGTTATTTGAGCTTCTTTTCATTTTCTGTTTATATAGATCTTTACAAGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

136

Amino Acids

15.47

Weight (kDa)

9.79

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 123	8.5e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	137, 187
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	2 cut(s)	172, 307
AcoI	YGGCCR	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	48, 137, 187
AgsI	TTSAA	2 cut(s)	280, 320
AjnI	CCWGG	1 cut(s)	112
AleI	CACNNNNGTG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	263, 271, 363
AluI	AGCT	3 cut(s)	263, 271, 363
Alw21I	GWGCWC	1 cut(s)	351
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	3 cut(s)	115, 189, 202
ApeKI	GCWGC	2 cut(s)	174, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspA2I	CCTAGG	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	116, 203
AsuNHI	GCTAGC	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	186, 250
BciT130I	CCWGG	1 cut(s)	114
BfaI	CTAG	3 cut(s)	155, 224, 303
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	175, 264, 307
BlnI	CCTAGG	1 cut(s)	223
BlsI	GCNGC	3 cut(s)	176, 265, 308
Bme1390I	CCNGG	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	116, 203
BmrFI	CCNGG	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	97, 223
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 137, 187
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	97, 223
BseGI	GGATG	2 cut(s)	21, 251
BseLI	CCNNNNNNNGG	3 cut(s)	48, 137, 187
BseXI	GCAGC	2 cut(s)	186, 250
BshFI	GGCC	3 cut(s)	117, 191, 204
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	48, 137, 187
BsnI	GGCC	3 cut(s)	117, 191, 204
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	172, 307
BspANI	GGCC	3 cut(s)	117, 191, 204
BspEI	TCCGGA	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	268
BspOI	GCTAGC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	97, 223
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	2 cut(s)	97, 223
Bst2UI	CCWGG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	21, 251
BstKTI	GATC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	114
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	186, 250
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	117, 191, 204
BtsCI	GGATG	2 cut(s)	21, 251
Cac8I	GCNNGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	116, 203
CviJI	RGCY	9 cut(s)	117, 177, 191, 204, 228, 263, 271, 306, 363
CviKI_1	RGCY	9 cut(s)	117, 177, 191, 204, 228, 263, 271, 306, 363
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	97, 223
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	2 cut(s)	97, 223
ErhI	CCWWGG	2 cut(s)	97, 223
FauNDI	CATATG	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	175, 264, 307
FokI	GGATG	2 cut(s)	8, 238
Fsp4HI	GCNGC	3 cut(s)	175, 264, 307
FspBI	CTAG	3 cut(s)	155, 224, 303
GluI	GCNGC	3 cut(s)	175, 264, 307
HaeIII	GGCC	3 cut(s)	117, 191, 204
HapII	CCGG	1 cut(s)	82
HinfI	GANTC	2 cut(s)	4, 78
HpaII	CCGG	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	82, 277
HpyAV	CCTTC	3 cut(s)	18, 52, 155
HpyCH4V	TGCA	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	4 cut(s)	34, 95, 99, 126
Lsp1109I	GCAGC	2 cut(s)	186, 250
MaeI	CTAG	3 cut(s)	155, 224, 303
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	1 cut(s)	25
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	35, 56, 78, 120, 188
Mox20I	TGGCCA	1 cut(s)	191
MroI	TCCGGA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	2 cut(s)	336, 406
MslI	CAYNNNNRTG	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	191
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	1 cut(s)	388
NheI	GCTAGC	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	2 cut(s)	137, 187
PkrI	GCNGC	3 cut(s)	176, 265, 308
Psp6I	CCWGG	1 cut(s)	112
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	116, 203
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	336, 406
SatI	GCNGC	3 cut(s)	175, 264, 307
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	116, 203
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	8 cut(s)	44, 74, 89, 112, 147, 265, 273, 365
SfcI	CTRYAG	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	172, 307
SspMI	CTAG	3 cut(s)	155, 224, 303
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	2 cut(s)	97, 223
TaqI	TCGA	1 cut(s)	89
TasI	AATT	1 cut(s)	342
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	336, 406
Tru9I	TTAA	2 cut(s)	336, 406
TseI	GCWGC	2 cut(s)	174, 263
TspDTI	ATGAA	4 cut(s)	137, 220, 240, 360
Van91I	CCANNNNNTGG	2 cut(s)	137, 187
XmaJI	CCTAGG	1 cut(s)	223
XspI	CTAG	3 cut(s)	155, 224, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.