Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000282

Physical Location & Seq

Genomic Coordinates Reverse (-)

5373053 .. 5373292

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGACCGAATGGTGGAAGAATCTGATTTGCCCAAGCTGGATTACTTGAGTATGGCGGTGAAGGAGAGCTTTAGACTACACTCGATTGCACCGTTACTAGTCCCACATGAATCCATCGAGGACATTACAATTGATGGACATGACATACCCAAGAAGTCGCGGATCATAGTAAACATCTGGAGCATTGGAAGATATCCCAATGTTTGGTCAGAAAATGTTGAGGAGTTAATTTTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

79

Amino Acids

9.13

Weight (kDa)

4.84

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 71	1.1e-20	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000282)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12350 FvH4_5g12380 FvH4_5g12392 FvH4_5g12400 FvH4_5g12430
malus_domestica	MD06G1213300.v1.1 MD06G1213500.v1.1 MD06G1213700.v1.1 MD06G1213800.v1.1 MD06G1213900.v1.1 MD06G1214000.v1.1 MD06G1214400.v1.1 MD14G1224300.v1.1 MD14G1224400.v1.1 MD14G1224600.v1.1 MD14G1224700.v1.1 MD14G1224800.v1.1 MD14G1224900.v1.1 MD14G1225100.v1.1 MD14G1225400.v1.1
prunus_persica	Prupe.5G219700_v2.0.a1 Prupe.5G219800_v2.0.a1 Prupe.5G219900_v2.0.a1 Prupe.8G078500_v2.0.a1
pyrus_communis	pycom06g19100 pycom14g18590 pycom14g18600 pycom14g18610 pycom14g18660
rosa_chinensis	RchiOBHm_Chr0c12g0499591 RchiOBHm_Chr2g0140591 RchiOBHm_Chr2g0140631 RchiOBHm_Chr2g0140641 RchiOBHm_Chr2g0140651 RchiOBHm_Chr4g0417991 RchiOBHm_Chr4g0418001 RchiOBHm_Chr4g0418101 RchiOBHm_Chr4g0418111 RchiOBHm_Chr4g0418121 RchiOBHm_Chr6g0280191 RchiOBHm_Chr6g0280241 RchiOBHm_Chr6g0280251 RchiOBHm_Chr7g0185031 RchiOBHm_Chr7g0185051 RchiOBHm_Chr7g0185081 RchiOBHm_Chr7g0185091 RchiOBHm_Chr7g0185111 RchiOBHm_Chr7g0185131 RchiOBHm_Chr7g0185151 RchiOBHm_Chr7g0185161 RchiOBHm_Chr7g0185191 RchiOBHm_Chr7g0222431
rosa_laevigata	RLG00000002061 RLG00000004934 RLG00000004935 RLG00000004937 RLG00000013071 RLG00000013077 RLG00000019621 RLG00000019881 RLG00000019884 RLG00000019887 RLG00000019888 RLG00000028839
rosa_multiflora	Rmu_co8014370.1_g000001 Rmu_co8334683.1_g000001 Rmu_co8440383.1_g000001 Rmu_sc0002826.1_g000008 Rmu_sc0002826.1_g000009 Rmu_sc0002826.1_g000030 Rmu_sc0004483.1_g000005 Rmu_sc0004638.1_g000003 Rmu_sc0004638.1_g000004 Rmu_sc0005756.1_g000003 Rmu_sc0006493.1_g000023 Rmu_sc0006493.1_g000024 Rmu_sc0007137.1_g000017 Rmu_sc0008496.1_g000022 Rmu_sc0008769.1_g000003 Rmu_sc0013612.1_g000026 Rmu_sc0013864.1_g000001 Rmu_sc0013864.1_g000007 Rmu_sc0013864.1_g000008 Rmu_sc0030128.1_g000001 Rmu_sc0041660.1_g000001 Rmu_ssc0000289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104640 Rroxscaffold_3G00253970 Rroxscaffold_3G00269170 Rroxscaffold_3G00269200 Rroxscaffold_3G00269210 Rroxscaffold_3G00269220 Rroxscaffold_3G00269230 Rroxscaffold_7G00188320
rosa_rugosa	Rorug01G0052300 Rorug05G0212000 Rorug06G0130700 Rorug06G0131100 Rorug06G0466200 Rorug06G0466300 Rorug06G0466400 Rorug06G0466500 Rorug06G0466700 Rorug07G0208500 Rorug07G0294600
rosa_samantha	Rh4AG137600 Rh6DG237300 Rh6DG237800 Rh7AG076200 Rh7AG076300 Rh7AG076500 Rh7AG076600 Rh7AG350700 Rh7BG070800 Rh7BG070900 Rh7BG071000 Rh7BG071100
rosa_wichuraiana	Rw6G020990 Rw6G021010 Rw7G005900 Rw7G005910 Rw7G005920 Rw7G005940 Rw7G005950 Rw7G005970 Rw7G029600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccII	CGCG	1 cut(s)	160
AciI	CCGC	2 cut(s)	56, 160
AclWI	GGATC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	13, 204
AhlI	ACTAGT	1 cut(s)	97
AluBI	AGCT	2 cut(s)	37, 69
AluI	AGCT	2 cut(s)	37, 69
AlwI	GGATC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	122, 128
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BpmI	CTGGAG	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 204
BseLI	CCNNNNNNNGG	2 cut(s)	13, 204
BseRI	GAGGAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	13, 204
BsmFI	GGGAC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	2 cut(s)	56, 160
BspFNI	CGCG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	170
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstUI	CGCG	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	107, 140
CviJI	RGCY	2 cut(s)	37, 69
CviKI_1	RGCY	2 cut(s)	37, 69
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	194
FaeI	CATG	2 cut(s)	110, 143
FaiI	YATR	5 cut(s)	53, 108, 141, 146, 167
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	106, 139
FspBI	CTAG	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	199
Hin1II	CATG	2 cut(s)	110, 143
HinfI	GANTC	2 cut(s)	20, 110
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	25, 211
Hpy188III	TCNNGA	2 cut(s)	178, 237
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	110, 143
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	2 cut(s)	23, 163
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	29, 201
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	2 cut(s)	129, 228
MnlI	CCTC	2 cut(s)	112, 214
MseI	TTAA	1 cut(s)	227
MunI	CAATTG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	160
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	110, 143
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	20, 110
PflMI	CCANNNNNTGG	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	2 cut(s)	39, 71
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	2 cut(s)	129, 228
SsiI	CCGC	2 cut(s)	56, 160
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	83, 117
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	129, 228
TfiI	GAWTC	2 cut(s)	20, 110
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.